Mercurial > repos > iuc > vsearch
diff alignment.xml @ 2:f29e21388219 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author | iuc |
---|---|
date | Thu, 17 Dec 2015 12:53:39 -0500 |
parents | fae6527990af |
children | 4258854759ba |
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--- a/alignment.xml Wed Aug 26 13:34:22 2015 -0400 +++ b/alignment.xml Thu Dec 17 12:53:39 2015 -0500 @@ -1,4 +1,4 @@ -<tool id="vsearch_alignment" name="VSearch alignment" version="@VERSION@.0"> +<tool id="vsearch_alignment" name="VSearch alignment" version="@VERSION@.1"> <description></description> <macros> <import>vsearch_macros.xml</import> @@ -11,11 +11,13 @@ vsearch @GENERAL@ $acceptall - --id $id - --iddef $iddef - --allpairs_global "$infile" - --alnout $outfile - --query_cov $query_cov + --id "${id}" + --iddef "${iddef}" + --allpairs_global "${infile}" + --alnout "${outfile}" + #if str( $query_cov ): + --query_cov "${query_cov}" + #end if @USERFIELDS@ ]]> </command> @@ -55,10 +57,6 @@ @EXTERNAL_DOCUMENTATION@ -------- - -@REFERENCES@ - ]]> </help>