diff test-data/BCG_Tokyo_Unknown_JP_DRR029468.vcf @ 6:9ddeef840a07 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit 95b221f68d19702681babd765c67caeeb24e7f1d"
author iuc
date Tue, 16 Nov 2021 08:26:14 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/BCG_Tokyo_Unknown_JP_DRR029468.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,26750 @@
+##fileformat=VCFv4.2
+##fileDate=20201215
+##source=freeBayes v1.3.1-dirty
+##reference=/home/galaxy/galaxy/tool-data/AF2122/sam_indexes/AF2122/AF2122.fa
+##contig=<ID=NC_002945.4,length=4349904>
+##phasing=none
+##commandline="freebayes --region NC_002945.4:0..4349904 --bam b_0.bam --fasta-reference /home/galaxy/galaxy/tool-data/AF2122/sam_indexes/AF2122/AF2122.fa --vcf ./vcf_output/part_NC_002945.4:0..4349904.vcf -u -n 0 --haplotype-length -1 --min-repeat-size 5 --min-repeat-entropy 1 -m 1 -q 0 -R 0 -Y 0 -e 1 -F 0.05 -C 2 -G 1 --min-alternate-qsum 0"
+##filter="QUAL > 20"
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
+##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
+##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
+##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
+##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
+##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
+##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
+##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
+##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
+##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
+##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
+##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
+##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
+##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
+##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
+##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
+##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
+##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
+##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
+##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
+##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
+##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
+##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
+##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
+##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
+##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
+##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
+##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
+##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
+##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
+##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
+##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
+##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
+##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
+##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
+##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BCG_Tokyo_Unknown_JP_DRR029468
+NC_002945.4	1057	.	A	G	388.64300000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:451:-40.9382,-3.61236,0
+NC_002945.4	4480	.	T	C	257.447	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:303:-27.6279,-2.40824,0
+NC_002945.4	8624	.	G	T	355.855	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=0;RO=0;RPL=8;RPP=7.94546;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:418:-37.9727,-3.31133,0
+NC_002945.4	9217	.	C	A	443.80400000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=0;RO=0;RPL=8;RPP=3.63072;RPPR=0;RPR=6;RUN=1;SAF=11;SAP=12.937;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:526:-47.6835,-4.21442,0
+NC_002945.4	10727	.	G	A	569.394	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=4.9405;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=0;RO=0;RPL=10;RPP=3.49285;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=3.0103;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:656:-59.3644,-5.41854,0
+NC_002945.4	17856	.	C	T	249.262	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:294:-26.8094,-2.40824,0
+NC_002945.4	24678	.	G	A	555.475	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=0;RO=0;RPL=10;RPP=4.1599;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=4.1599;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:640:-57.9365,-5.11751,0
+NC_002945.4	25287	.	G	C	398.574	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:462:-41.9314,-3.61236,0
+NC_002945.4	27695	.	C	T	379.319	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:453:-41.1185,-3.61236,0
+NC_002945.4	33788	.	A	G	356.88199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=11;SAP=21.1059;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:439:-39.8528,-3.61236,0
+NC_002945.4	35326	.	C	T	596.929	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=0;RO=0;RPL=11;RPP=4.9405;RPPR=0;RPR=7;RUN=1;SAF=13;SAP=10.7311;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:699:-63.2442,-5.41854,0
+NC_002945.4	39077	.	G	A	359.76099999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:419:-38.0623,-3.31133,0
+NC_002945.4	41228	.	A	C	299.643	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:354:-32.1924,-3.0103,0
+NC_002945.4	41437	.	T	C	421.038	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:488:-44.2654,-3.91339,0
+NC_002945.4	49989	.	A	G	364.96	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=9;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:431:-39.1262,-3.61236,0
+NC_002945.4	50750	.	A	G	661.092	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=4.74748;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=32.3311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=0;RO=0;RPL=9;RPP=3.44459;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=3.44459;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,20:0:0:20:761:-68.6203,-6.0206,0
+NC_002945.4	59861	.	A	G	290.491	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:343:-31.2279,-2.70927,0
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+NC_002945.4	104243	.	N	.	.	.	.	GT	./.
+NC_002945.4	104244	.	N	.	.	.	.	GT	./.
+NC_002945.4	104245	.	N	.	.	.	.	GT	./.
+NC_002945.4	104246	.	N	.	.	.	.	GT	./.
+NC_002945.4	104247	.	N	.	.	.	.	GT	./.
+NC_002945.4	104248	.	N	.	.	.	.	GT	./.
+NC_002945.4	104249	.	N	.	.	.	.	GT	./.
+NC_002945.4	104250	.	N	.	.	.	.	GT	./.
+NC_002945.4	104251	.	N	.	.	.	.	GT	./.
+NC_002945.4	104252	.	N	.	.	.	.	GT	./.
+NC_002945.4	104253	.	N	.	.	.	.	GT	./.
+NC_002945.4	104254	.	N	.	.	.	.	GT	./.
+NC_002945.4	104255	.	N	.	.	.	.	GT	./.
+NC_002945.4	104256	.	N	.	.	.	.	GT	./.
+NC_002945.4	104257	.	N	.	.	.	.	GT	./.
+NC_002945.4	104258	.	N	.	.	.	.	GT	./.
+NC_002945.4	104259	.	N	.	.	.	.	GT	./.
+NC_002945.4	104260	.	N	.	.	.	.	GT	./.
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+NC_002945.4	104264	.	N	.	.	.	.	GT	./.
+NC_002945.4	104265	.	N	.	.	.	.	GT	./.
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+NC_002945.4	375693	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581913	.	N	.	.	.	.	GT	./.
+NC_002945.4	581914	.	N	.	.	.	.	GT	./.
+NC_002945.4	581915	.	N	.	.	.	.	GT	./.
+NC_002945.4	581916	.	N	.	.	.	.	GT	./.
+NC_002945.4	581917	.	N	.	.	.	.	GT	./.
+NC_002945.4	581918	.	N	.	.	.	.	GT	./.
+NC_002945.4	581919	.	N	.	.	.	.	GT	./.
+NC_002945.4	581920	.	N	.	.	.	.	GT	./.
+NC_002945.4	581921	.	N	.	.	.	.	GT	./.
+NC_002945.4	581922	.	N	.	.	.	.	GT	./.
+NC_002945.4	581923	.	N	.	.	.	.	GT	./.
+NC_002945.4	581924	.	N	.	.	.	.	GT	./.
+NC_002945.4	581925	.	N	.	.	.	.	GT	./.
+NC_002945.4	581926	.	N	.	.	.	.	GT	./.
+NC_002945.4	581927	.	N	.	.	.	.	GT	./.
+NC_002945.4	581928	.	N	.	.	.	.	GT	./.
+NC_002945.4	581929	.	N	.	.	.	.	GT	./.
+NC_002945.4	581930	.	N	.	.	.	.	GT	./.
+NC_002945.4	581931	.	N	.	.	.	.	GT	./.
+NC_002945.4	581932	.	N	.	.	.	.	GT	./.
+NC_002945.4	581933	.	N	.	.	.	.	GT	./.
+NC_002945.4	581934	.	N	.	.	.	.	GT	./.
+NC_002945.4	581935	.	N	.	.	.	.	GT	./.
+NC_002945.4	581936	.	N	.	.	.	.	GT	./.
+NC_002945.4	581937	.	N	.	.	.	.	GT	./.
+NC_002945.4	581938	.	N	.	.	.	.	GT	./.
+NC_002945.4	581939	.	N	.	.	.	.	GT	./.
+NC_002945.4	581940	.	N	.	.	.	.	GT	./.
+NC_002945.4	581941	.	N	.	.	.	.	GT	./.
+NC_002945.4	581942	.	N	.	.	.	.	GT	./.
+NC_002945.4	581943	.	N	.	.	.	.	GT	./.
+NC_002945.4	581944	.	N	.	.	.	.	GT	./.
+NC_002945.4	581945	.	N	.	.	.	.	GT	./.
+NC_002945.4	581946	.	N	.	.	.	.	GT	./.
+NC_002945.4	581947	.	N	.	.	.	.	GT	./.
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+NC_002945.4	842369	.	N	.	.	.	.	GT	./.
+NC_002945.4	842370	.	N	.	.	.	.	GT	./.
+NC_002945.4	842371	.	N	.	.	.	.	GT	./.
+NC_002945.4	842372	.	N	.	.	.	.	GT	./.
+NC_002945.4	842373	.	N	.	.	.	.	GT	./.
+NC_002945.4	842374	.	N	.	.	.	.	GT	./.
+NC_002945.4	842375	.	N	.	.	.	.	GT	./.
+NC_002945.4	842376	.	N	.	.	.	.	GT	./.
+NC_002945.4	842377	.	N	.	.	.	.	GT	./.
+NC_002945.4	842378	.	N	.	.	.	.	GT	./.
+NC_002945.4	842379	.	N	.	.	.	.	GT	./.
+NC_002945.4	842380	.	N	.	.	.	.	GT	./.
+NC_002945.4	842381	.	N	.	.	.	.	GT	./.
+NC_002945.4	842382	.	N	.	.	.	.	GT	./.
+NC_002945.4	842383	.	N	.	.	.	.	GT	./.
+NC_002945.4	842384	.	N	.	.	.	.	GT	./.
+NC_002945.4	842385	.	N	.	.	.	.	GT	./.
+NC_002945.4	842386	.	N	.	.	.	.	GT	./.
+NC_002945.4	842387	.	N	.	.	.	.	GT	./.
+NC_002945.4	842388	.	N	.	.	.	.	GT	./.
+NC_002945.4	842389	.	N	.	.	.	.	GT	./.
+NC_002945.4	842390	.	N	.	.	.	.	GT	./.
+NC_002945.4	842391	.	N	.	.	.	.	GT	./.
+NC_002945.4	842392	.	N	.	.	.	.	GT	./.
+NC_002945.4	842393	.	N	.	.	.	.	GT	./.
+NC_002945.4	842394	.	N	.	.	.	.	GT	./.
+NC_002945.4	842395	.	N	.	.	.	.	GT	./.
+NC_002945.4	842396	.	N	.	.	.	.	GT	./.
+NC_002945.4	842397	.	N	.	.	.	.	GT	./.
+NC_002945.4	842398	.	N	.	.	.	.	GT	./.
+NC_002945.4	842399	.	N	.	.	.	.	GT	./.
+NC_002945.4	842400	.	N	.	.	.	.	GT	./.
+NC_002945.4	842401	.	N	.	.	.	.	GT	./.
+NC_002945.4	842402	.	N	.	.	.	.	GT	./.
+NC_002945.4	842403	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192625	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1214848	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1214859	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1214871	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214873	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1284872	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1284875	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1284922	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1284926	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284927	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1295859	.	G	C	657.663	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=4.74748;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=32.3311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=0;RO=0;RPL=11;RPP=3.44459;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=3.44459;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:755:-68.2774,-6.0206,0
+NC_002945.4	1306932	.	G	C	134.944	.	AB=0.4375;ABP=3.55317;AC=1;AF=0.5;AN=2;AO=7;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.32051;EPPR=3.25157;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=31.0719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=333;RO=9;RPL=7;RPP=18.2106;RPPR=14.8328;RPR=0;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=5;SRP=3.25157;SRR=4;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:333:7:266:-19.4859,0,-25.5051
+NC_002945.4	1319269	.	G	C	348.716	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=12.6832;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:417:-37.882,-3.31133,0
+NC_002945.4	1335092	.	T	C	348.885	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:407:-36.9747,-3.31133,0
+NC_002945.4	1339796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1340109	.	C	A	201.141	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.32051;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=12.7022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=13;RO=1;RPL=4;RPP=3.32051;RPPR=5.18177;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:1,7:1:13:7:243:-20.9004,-1.10825,0
+NC_002945.4	1340710	.	G	C	74.2304	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:151:-9.47908,-1.20412,0
+NC_002945.4	1340713	.	T	G	75.9823	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:154:-9.65427,-1.20412,0
+NC_002945.4	1340714	.	C	A	75.0625	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:153:-9.56229,-1.20412,0
+NC_002945.4	1341272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341401	.	A	G	197.21599999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:298:-23.2561,-2.40824,0
+NC_002945.4	1341405	.	A	G	263.395	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:381:-30.5676,-3.0103,0
+NC_002945.4	1341588	.	A	C	224.545	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:306:-24.9398,-2.40824,0
+NC_002945.4	1341589	.	G	A	203.363	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:282:-22.8216,-2.40824,0
+NC_002945.4	1341592	.	C	A	260.632	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.1111;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:345:-28.61,-2.70927,0
+NC_002945.4	1342105	.	A	G	69.3468	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.1429;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:262:-11.5661,-2.10721,0
+NC_002945.4	1343711	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343712	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343713	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343717	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343718	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343746	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1343752	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1343758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343759	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1343761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343764	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1364293	.	C	G	484.462	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=4.31318;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=0;RO=0;RPL=5;RPP=6.62942;RPPR=0;RPR=10;RUN=1;SAF=8;SAP=3.15506;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:563:-51.0071,-4.51545,0
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+NC_002945.4	1372878	.	C	A	198.044	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=2;RPP=5.80219;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:257:-23.4816,-2.10721,0
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+NC_002945.4	1412824	.	T	C	403.505	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.6154;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:481:-42.7619,-3.91339,0
+NC_002945.4	1412828	.	T	A	327.664	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.6154;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:402:-35.1778,-3.91339,0
+NC_002945.4	1412893	.	T	A	212.892	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.8889;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=8;RPP=14.8328;RPPR=0;RPR=1;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:284:-24.262,-2.70927,0
+NC_002945.4	1414048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414057	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414060	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414065	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414068	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414069	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414070	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414080	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414142	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414161	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414166	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414170	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414173	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414177	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414181	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414185	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1417169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417780	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417781	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417791	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417792	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1421904	.	T	C	420.85400000000004	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=0;RO=0;RPL=7;RPP=3.17734;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:492:-44.6271,-3.91339,0
+NC_002945.4	1442194	.	T	G	463.452	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=10.1038;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=0;RO=0;RPL=8;RPP=3.15506;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=6.62942;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:546:-49.4703,-4.51545,0
+NC_002945.4	1442493	.	T	C	415.779	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:485:-43.9947,-3.91339,0
+NC_002945.4	1457665	.	C	G	509.043	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.55317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=4;SAP=11.6962;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:596:-53.9768,-4.81648,0
+NC_002945.4	1459384	.	C	G	453.905	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=0;RO=0;RPL=6;RPP=3.63072;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:529:-47.9533,-4.21442,0
+NC_002945.4	1464678	.	C	G	539.785	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=6.20364;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=0;RO=0;RPL=3;RPP=18.4661;RPPR=0;RPR=14;RUN=1;SAF=7;SAP=4.1599;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:642:-58.1171,-5.11751,0
+NC_002945.4	1481327	.	T	C	626.985	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=3.12459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=0;RO=0;RPL=11;RPP=4.03889;RPPR=0;RPR=8;RUN=1;SAF=12;SAP=5.8675;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:722:-65.3109,-5.71957,0
+NC_002945.4	1492415	.	C	T	599.019	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=4.03889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=0;RO=0;RPL=8;RPP=4.03889;RPPR=0;RPR=11;RUN=1;SAF=7;SAP=5.8675;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:692:-62.6015,-5.71957,0
+NC_002945.4	1501932	.	T	C	325.305	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.20771;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=17.3814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=15;RO=1;RPL=6;RPP=3.20771;RPPR=5.18177;RPR=5;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:1,11:1:15:11:386:-33.5675,-2.11237,0
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+NC_002945.4	1535387	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535388	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535389	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535390	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535391	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535392	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535393	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535394	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535395	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535396	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535397	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535398	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535399	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535400	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535401	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535402	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535403	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535404	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535405	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535406	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535407	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535408	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535409	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535410	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535411	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535412	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535413	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535414	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535415	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535416	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535417	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535418	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535419	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535420	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535421	.	N	.	.	.	.	GT	./.
+NC_002945.4	1535422	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1535431	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1623786	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1623817	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1623821	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1634917	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1634921	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1637957	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1778185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1784613	.	T	G	27.4411	.	AB=0.571429;ABP=3.63072;AC=1;AF=0.5;AN=2;AO=8;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=4.45795;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=6.31673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=218;RO=6;RPL=4;RPP=3.0103;RPPR=4.45795;RPR=4;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=16.0391;SRR=6;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:218:8:145:-9.01471,0,-15.7573
+NC_002945.4	1788345	.	C	A	357.79699999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=8.59409;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=0;RO=0;RPL=2;RPP=18.5208;RPPR=0;RPR=12;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,14:0:0:14:449:-40.4631,-4.21442,0
+NC_002945.4	1790296	.	G	A	473.04400000000004	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=0;RO=0;RPL=10;RPP=5.18177;RPPR=0;RPR=6;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:548:-49.6311,-4.81648,0
+NC_002945.4	1803035	.	C	T	627.822	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=3.12459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=0;RO=0;RPL=11;RPP=4.03889;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=3.12459;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:720:-65.1314,-5.71957,0
+NC_002945.4	1804997	.	T	C	347.999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:406:-36.8861,-3.31133,0
+NC_002945.4	1806623	.	T	G	384.87	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:456:-41.3883,-3.61236,0
+NC_002945.4	1817079	.	C	T	459.474	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=0;RO=0;RPL=8;RPP=3.63072;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:530:-48.042,-4.21442,0
+NC_002945.4	1820059	.	G	A	448.629	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:518:-46.9575,-4.21442,0
+NC_002945.4	1828062	.	A	T	394.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:457:-41.4789,-3.61236,0
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+NC_002945.4	2244283	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2283371	.	C	A	288.678	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=5;RPP=3.25157;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:341:-31.0466,-2.70927,0
+NC_002945.4	2284747	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2284749	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284750	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284751	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2609510	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2609512	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609513	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609514	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609515	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609516	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609517	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609518	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609519	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609520	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609521	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609522	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609523	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609524	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609525	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609526	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609527	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609528	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609529	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609530	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609531	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609532	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609533	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609534	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609535	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609536	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609537	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2611437	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611438	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611439	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611440	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611441	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611442	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611443	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611444	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611445	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611446	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611447	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611448	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611449	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611450	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611451	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611452	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611453	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611454	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611455	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611456	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611457	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611458	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611459	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611460	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611461	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611462	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611463	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611464	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611465	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611466	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611467	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611468	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611469	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611470	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611471	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611472	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611473	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611474	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611475	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611476	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611477	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611478	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611479	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611480	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611481	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611482	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611483	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611484	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611485	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611486	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611487	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2667489	.	T	C	663.061	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=11.386;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=33.7174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=0;RO=0;RPL=11;RPP=3.1137;RPPR=0;RPR=10;RUN=1;SAF=15;SAP=11.386;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:777:-70.2545,-6.32163,0
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+NC_002945.4	2687721	.	C	T	371.265	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:438:-39.7567,-3.61236,0
+NC_002945.4	2689902	.	A	G	486.001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=3.15506;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=0;RO=0;RPL=7;RPP=3.15506;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=4.31318;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:561:-50.8299,-4.51545,0
+NC_002945.4	2701997	.	G	T	371.425	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:432:-39.2165,-3.61236,0
+NC_002945.4	2723330	.	G	A	506.542	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=0;RO=0;RPL=8;RPP=3.0103;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:585:-52.9809,-4.81648,0
+NC_002945.4	2725582	.	T	C	458.939	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:532:-48.2226,-4.21442,0
+NC_002945.4	2731377	.	C	G	538.238	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=13.3567;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=0;RO=0;RPL=7;RPP=4.1599;RPPR=0;RPR=10;RUN=1;SAF=9;SAP=3.13803;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:631:-57.125,-5.11751,0
+NC_002945.4	2732218	.	T	C	418.293	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=0;RO=0;RPL=4;RPP=7.18621;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=7.18621;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:492:-44.6263,-3.91339,0
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+NC_002945.4	2740416	.	C	T	517.863	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=7.89611;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:601:-54.4275,-4.81648,0
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+NC_002945.4	3016073	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016166	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016167	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016171	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016175	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016180	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016181	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016182	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016183	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016184	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016185	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016186	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016187	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016188	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016189	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016190	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016191	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016192	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016193	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016194	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016195	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016196	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016197	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016198	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016199	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016200	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016201	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016202	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016203	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016204	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016205	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016206	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016207	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016208	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016209	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016210	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016211	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016213	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016214	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016215	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016216	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016217	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016218	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016219	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016220	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016221	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016222	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016223	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016224	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016225	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016226	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016227	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016228	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016229	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016230	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016231	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016232	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016233	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016234	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3040820	.	A	G	554.49	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=0;RO=0;RPL=11;RPP=6.20364;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=3.13803;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:640:-57.9374,-5.11751,0
+NC_002945.4	3042914	.	T	G	482.22	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=10.1038;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=0;RO=0;RPL=4;RPP=10.1038;RPPR=0;RPR=11;RUN=1;SAF=4;SAP=10.1038;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:578:-52.3629,-4.51545,0
+NC_002945.4	3050324	.	G	A	298.932	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=16.9077;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=0;RO=0;RPL=2;RPP=10.8276;RPPR=0;RPR=8;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:376:-34.1917,-3.0103,0
+NC_002945.4	3053649	.	G	A	390.87199999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=0;RO=0;RPL=4;RPP=5.9056;RPPR=0;RPR=8;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:455:-41.2983,-3.61236,0
+NC_002945.4	3056303	.	A	C	326.882	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:384:-34.9163,-3.0103,0
+NC_002945.4	3062886	.	C	T	439.459	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=0;RO=0;RPL=5;RPP=5.49198;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:513:-46.5087,-4.21442,0
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+NC_002945.4	3070642	.	C	T	422.25199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=0;RO=0;RPL=6;RPP=3.63072;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:494:-44.7879,-4.21442,0
+NC_002945.4	3075667	.	T	C	518.364	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=0;RO=0;RPL=10;RPP=4.1599;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=4.1599;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:599:-54.2254,-5.11751,0
+NC_002945.4	3080557	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080563	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080572	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080582	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080588	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083743	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083750	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083751	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083752	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083753	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083754	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083756	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083757	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083758	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083759	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083761	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083762	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083763	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083764	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083765	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083766	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083768	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083769	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083770	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083771	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083772	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083773	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083774	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083775	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083776	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083777	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083778	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083779	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3097139	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097140	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097141	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097142	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097143	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097144	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097145	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097146	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124434	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124435	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124436	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124437	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124438	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124439	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124440	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124441	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124442	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124443	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124444	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124445	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124446	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124447	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124448	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124449	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124450	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124451	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124452	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124453	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124454	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124455	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124456	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124457	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124458	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124459	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124460	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124461	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124462	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124463	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124464	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124465	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124466	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124467	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124468	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3140342	.	G	T	359.464	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=0;RO=0;RPL=3;RPP=7.94546;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:422:-38.3336,-3.31133,0
+NC_002945.4	3141703	.	C	T	513.855	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.55317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=0;RO=0;RPL=9;RPP=3.55317;RPPR=0;RPR=7;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:592:-53.6085,-4.81648,0
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+NC_002945.4	3777243	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777266	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3836491	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836492	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836493	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836494	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836495	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836496	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836497	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836498	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836499	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836500	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836501	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836502	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836503	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836504	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836505	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836506	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836507	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836508	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836509	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836510	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836511	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836512	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836513	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836514	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836515	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836516	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836517	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836518	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836519	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836520	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836521	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836522	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836523	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836524	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836525	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836526	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836527	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836528	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836529	.	N	.	.	.	.	GT	./.
+NC_002945.4	3838435	.	T	C	477.385	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=3.15506;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=0;RO=0;RPL=3;RPP=14.7363;RPPR=0;RPR=12;RUN=1;SAF=8;SAP=3.15506;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:563:-51.0097,-4.51545,0
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+NC_002945.4	3845613	.	G	C	34.2388	.	AB=0.227273;ABP=17.2236;AC=1;AF=0.5;AN=2;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=6.91895;EPPR=9.26925;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=60;NS=1;NUMALT=1;ODDS=7.88339;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=639;RO=17;RPL=0;RPP=13.8677;RPPR=3.13803;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=10;SRP=4.1599;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:639:5:189:-10.7434,0,-51.2236
+NC_002945.4	3845623	.	G	C	28.7418	.	AB=0.227273;ABP=17.2236;AC=1;AF=0.5;AN=2;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=6.91895;EPPR=9.26925;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=60;NS=1;NUMALT=1;ODDS=6.6167;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=633;RO=17;RPL=0;RPP=13.8677;RPPR=3.13803;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=10;SRP=4.1599;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:633:5:183:-10.1932,0,-50.682
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+NC_002945.4	3849826	.	C	T	526.798	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=0;RO=0;RPL=6;RPP=5.18177;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:612:-55.4187,-4.81648,0
+NC_002945.4	3857532	.	G	A	404.504	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=3;SAP=11.1951;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:477:-43.2652,-3.91339,0
+NC_002945.4	3866857	.	T	G	657.775	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=32.3311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=0;RO=0;RPL=10;RPP=3.0103;RPPR=0;RPR=10;RUN=1;SAF=7;SAP=6.91895;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:757:-68.458,-6.0206,0
+NC_002945.4	3868364	.	G	A	328.691	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=0;RO=0;RPL=3;RPP=6.48466;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:386:-35.0972,-3.0103,0
+NC_002945.4	3871540	.	G	C	349.524	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=0;RO=0;RPL=10;RPP=14.5915;RPPR=0;RPR=2;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:425:-38.5807,-3.61236,0
+NC_002945.4	3874432	.	A	G	392.255	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:458:-41.5705,-3.61236,0
+NC_002945.4	3878227	.	C	T	69.9397	.	AB=0.454545;ABP=3.20771;AC=1;AF=0.5;AN=2;AO=5;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=13.8677;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.1667;NS=1;NUMALT=1;ODDS=16.1042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=203;RO=6;RPL=5;RPP=13.8677;RPPR=4.45795;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=1;SRP=8.80089;SRR=5;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:203:5:190:-14.1561,0,-15.2831
+NC_002945.4	3879080	.	A	G	33.9427	.	AB=0.6;ABP=3.44459;AC=1;AF=0.5;AN=2;AO=3;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.73412;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=3.21978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=76;RO=2;RPL=3;RPP=9.52472;RPPR=7.35324;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:2,3:2:76:3:98:-7.63726,0,-5.70966
+NC_002945.4	3882858	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882859	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882860	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882861	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882862	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882863	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882864	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882865	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882866	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882867	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882868	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882869	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882870	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882871	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882872	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882873	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3895368	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895369	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895370	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895371	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895372	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895373	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895374	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895375	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895376	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895377	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895378	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895379	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895380	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895381	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895382	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895383	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895384	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895385	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895386	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895387	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895388	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895389	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895390	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895391	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3969490	.	T	C	354.95099999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=3;SAP=7.94546;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:417:-37.8823,-3.31133,0
+NC_002945.4	3972394	.	C	T	603.1990000000001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=3.12459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=0;RO=0;RPL=11;RPP=4.03889;RPPR=0;RPR=8;RUN=1;SAF=17;SAP=28.7251;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:723:-65.4016,-5.71957,0
+NC_002945.4	3973135	.	T	C	341.649	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:399:-36.2511,-3.31133,0
+NC_002945.4	3976663	.	N	.	.	.	.	GT	./.
+NC_002945.4	3976664	.	N	.	.	.	.	GT	./.
+NC_002945.4	3977886	.	G	A	252.57	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:302:-27.5382,-2.40824,0
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+NC_002945.4	3988787	.	C	G	257.461	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:303:-27.6293,-2.40824,0
+NC_002945.4	3995646	.	A	G	536.197	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=18.4661;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=0;RO=0;RPL=6;RPP=6.20364;RPPR=0;RPR=11;RUN=1;SAF=8;SAP=3.13803;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:637:-57.6613,-5.11751,0
+NC_002945.4	3996187	.	G	C	253.54	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:308:-28.0824,-2.40824,0
+NC_002945.4	4003460	.	G	A	663.061	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=5.59539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=33.7174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=778;QR=0;RO=0;RPL=8;RPP=5.59539;RPPR=0;RPR=13;RUN=1;SAF=16;SAP=15.5221;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:778:-70.3453,-6.32163,0
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+NC_002945.4	4027025	.	G	A	525.717	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=0;RO=0;RPL=9;RPP=3.55317;RPPR=0;RPR=7;RUN=1;SAF=11;SAP=7.89611;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:612:-55.4189,-4.81648,0
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+NC_002945.4	4032905	.	G	A	452.918	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=8.59409;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:528:-47.8636,-4.21442,0
+NC_002945.4	4036115	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036116	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036117	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036118	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4220513	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4227772	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4245762	.	A	G	446.686	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=0;RO=0;RPL=9;RPP=5.49198;RPPR=0;RPR=5;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:521:-47.2314,-4.21442,0
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+NC_002945.4	4259259	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4259266	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259267	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4259270	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259271	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259272	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259273	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259274	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259275	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259276	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259277	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259278	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259279	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259280	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259281	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4290998	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291000	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291003	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291005	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291006	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291014	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291015	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291016	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291017	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291020	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291022	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291023	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291042	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291045	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291046	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291047	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291048	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291049	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291050	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291051	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291052	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291053	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291054	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291055	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291056	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291059	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291060	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291067	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291071	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291072	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291077	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291091	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291092	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291093	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291094	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291095	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291096	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291097	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291098	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291102	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291104	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291105	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291106	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291107	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291108	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291109	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291110	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291111	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291114	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291115	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291120	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291121	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291122	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291123	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291125	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291126	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291127	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291128	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291129	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291130	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291131	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291132	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291133	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291134	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291135	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291136	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291137	.	N	.	.	.	.	GT	./.
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