# HG changeset patch
# User iuc
# Date 1637051174 0
# Node ID 9ddeef840a0780ad7f020b19ddf51c4f34054604
# Parent  5a5cf6f024bf0bfe090abb3d15d465acf664e48e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit 95b221f68d19702681babd765c67caeeb24e7f1d"

diff -r 5a5cf6f024bf -r 9ddeef840a07 static/images/table_description.png
Binary file static/images/table_description.png has changed
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/01_1787_FL_Zoo_Jaguar.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/01_1787_FL_Zoo_Jaguar.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,3765 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=LowQual,Description="Low quality">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.8-0-ge9d806836,Date="Fri Dec 22 16:41:19 CST 2017",Epoch=1513982479531,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/01-1787-quality.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/NC_002945v4.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false out=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/01-1787-hapall.vcf likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[] excludeAnnotation=[] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=true numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=true captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
+##contig=<ID=NC_002945.4,length=4349904>
+##reference=file:///scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/01-1787/NC_002945v4.fasta
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	01-1787
+NC_002945.4	1057	.	A	G	10912.77	.	AC=2;AF=1.00;AN=2;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.56;SOR=0.703	GT:AD:DP:GQ:PL	1/1:0,396:396:99:10941,1177,0
+NC_002945.4	8741	.	T	C	8362.77	.	AC=2;AF=1.00;AN=2;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.45;SOR=1.392	GT:AD:DP:GQ:PL	1/1:0,250:250:99:8391,748,0
+NC_002945.4	14487	.	C	G	6175.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.88;ReadPosRankSum=-0.324;SOR=4.804	GT:AD:DP:GQ:PL	1/1:1,159:160:99:6204,468,0
+NC_002945.4	33788	.	A	G	7640.77	.	AC=2;AF=1.00;AN=2;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.31;SOR=4.828	GT:AD:DP:GQ:PL	1/1:0,180:180:99:7669,542,0
+NC_002945.4	41437	.	T	C	10083.77	.	AC=2;AF=1.00;AN=2;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.870	GT:AD:DP:GQ:PL	1/1:0,342:342:99:10112,1020,0
+NC_002945.4	57197	.	G	C	3714.77	.	AC=2;AF=1.00;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.21;SOR=3.809	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3743,315,0
+NC_002945.4	67098	.	G	A	7793.77	.	AC=2;AF=1.00;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.09;SOR=0.867	GT:AD:DP:GQ:PL	1/1:0,259:259:99:7822,775,0
+NC_002945.4	69913	.	T	C	10036.77	.	AC=2;AF=1.00;AN=2;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.27;SOR=0.725	GT:AD:DP:GQ:PL	1/1:0,321:321:99:10065,956,0
+NC_002945.4	103928	.	G	C	4649.77	.	AC=2;AF=1.00;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.64;QD=27.17;SOR=2.573	GT:AD:DP:GQ:PL	1/1:0,110:110:99:4678,331,0
+NC_002945.4	103931	.	G	C	4505.77	.	AC=2;AF=1.00;AN=2;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.18;QD=26.01;SOR=2.509	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4534,321,0
+NC_002945.4	104264	.	A	G	241.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.54;QD=34.54;SOR=4.174	GT:AD:DP:GQ:PL	1/1:0,7:7:21:270,21,0
+NC_002945.4	119328	.	G	T	12064.77	.	AC=2;AF=1.00;AN=2;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=0.736	GT:AD:DP:GQ:PL	1/1:0,423:423:99:12093,1260,0
+NC_002945.4	127447	.	G	C	6051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.52;ReadPosRankSum=-0.504;SOR=0.572	GT:AD:DP:GQ:PL	1/1:1,191:192:99:6080,562,0
+NC_002945.4	130237	.	T	C	8833.77	.	AC=2;AF=1.00;AN=2;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.15;SOR=1.012	GT:AD:DP:GQ:PL	1/1:0,293:293:99:8862,869,0
+NC_002945.4	159370	.	A	G	6799.77	.	AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.34;SOR=0.779	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6828,648,0
+NC_002945.4	160535	.	T	C	8515.77	.	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.63;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,278:278:99:8544,826,0
+NC_002945.4	165799	.	G	A	8624.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.19;ReadPosRankSum=1.442;SOR=0.272	GT:AD:DP:GQ:PL	1/1:1,305:306:99:8653,897,0
+NC_002945.4	166696	.	A	G	6491.77	.	AC=2;AF=1.00;AN=2;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.77;SOR=1.079	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6520,627,0
+NC_002945.4	180444	.	T	C	8771.77	.	AC=2;AF=1.00;AN=2;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=1.168	GT:AD:DP:GQ:PL	1/1:0,314:314:99:8800,931,0
+NC_002945.4	182704	.	G	A	7366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.976;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=1.545;SOR=0.382	GT:AD:DP:GQ:PL	1/1:3,265:268:99:7395,761,0
+NC_002945.4	185429	.	T	C	6597.77	.	AC=2;AF=1.00;AN=2;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.02;SOR=2.760	GT:AD:DP:GQ:PL	1/1:0,187:187:99:6626,561,0
+NC_002945.4	228660	.	C	T	6295.77	.	AC=2;AF=1.00;AN=2;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.49;SOR=0.892	GT:AD:DP:GQ:PL	1/1:0,229:229:99:6324,681,0
+NC_002945.4	232188	.	G	C	4879.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=1.419;SOR=0.712	GT:AD:DP:GQ:PL	1/1:1,162:163:99:4908,474,0
+NC_002945.4	246207	.	C	T	8706.77	.	AC=2;AF=1.00;AN=2;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.22;SOR=0.806	GT:AD:DP:GQ:PL	1/1:0,298:298:99:8735,889,0
+NC_002945.4	255465	.	A	G	9237.77	.	AC=2;AF=1.00;AN=2;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.53;SOR=0.875	GT:AD:DP:GQ:PL	1/1:0,284:284:99:9266,848,0
+NC_002945.4	295519	.	T	C	9658.77	.	AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.36;SOR=0.719	GT:AD:DP:GQ:PL	1/1:0,308:308:99:9687,920,0
+NC_002945.4	306689	.	N	.	.	.	.	GT	./.
+NC_002945.4	306690	.	N	.	.	.	.	GT	./.
+NC_002945.4	306691	.	N	.	.	.	.	GT	./.
+NC_002945.4	306692	.	N	.	.	.	.	GT	./.
+NC_002945.4	306693	.	N	.	.	.	.	GT	./.
+NC_002945.4	306694	.	N	.	.	.	.	GT	./.
+NC_002945.4	306695	.	N	.	.	.	.	GT	./.
+NC_002945.4	306696	.	N	.	.	.	.	GT	./.
+NC_002945.4	306697	.	N	.	.	.	.	GT	./.
+NC_002945.4	306698	.	N	.	.	.	.	GT	./.
+NC_002945.4	306699	.	N	.	.	.	.	GT	./.
+NC_002945.4	306700	.	N	.	.	.	.	GT	./.
+NC_002945.4	306701	.	N	.	.	.	.	GT	./.
+NC_002945.4	306702	.	N	.	.	.	.	GT	./.
+NC_002945.4	306703	.	N	.	.	.	.	GT	./.
+NC_002945.4	306704	.	N	.	.	.	.	GT	./.
+NC_002945.4	306705	.	N	.	.	.	.	GT	./.
+NC_002945.4	306706	.	N	.	.	.	.	GT	./.
+NC_002945.4	306707	.	N	.	.	.	.	GT	./.
+NC_002945.4	306708	.	N	.	.	.	.	GT	./.
+NC_002945.4	306709	.	N	.	.	.	.	GT	./.
+NC_002945.4	324581	.	G	A	8321.77	.	AC=2;AF=1.00;AN=2;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.72;SOR=0.752	GT:AD:DP:GQ:PL	1/1:0,280:280:99:8350,837,0
+NC_002945.4	333332	.	N	.	.	.	.	GT	./.
+NC_002945.4	333333	.	N	.	.	.	.	GT	./.
+NC_002945.4	333334	.	N	.	.	.	.	GT	./.
+NC_002945.4	333335	.	N	.	.	.	.	GT	./.
+NC_002945.4	333336	.	N	.	.	.	.	GT	./.
+NC_002945.4	333337	.	N	.	.	.	.	GT	./.
+NC_002945.4	333338	.	N	.	.	.	.	GT	./.
+NC_002945.4	333342	.	N	.	.	.	.	GT	./.
+NC_002945.4	333343	.	N	.	.	.	.	GT	./.
+NC_002945.4	333344	.	N	.	.	.	.	GT	./.
+NC_002945.4	333345	.	N	.	.	.	.	GT	./.
+NC_002945.4	333346	.	N	.	.	.	.	GT	./.
+NC_002945.4	333347	.	N	.	.	.	.	GT	./.
+NC_002945.4	333363	.	N	.	.	.	.	GT	./.
+NC_002945.4	333364	.	N	.	.	.	.	GT	./.
+NC_002945.4	333365	.	N	.	.	.	.	GT	./.
+NC_002945.4	333366	.	N	.	.	.	.	GT	./.
+NC_002945.4	333367	.	N	.	.	.	.	GT	./.
+NC_002945.4	333368	.	N	.	.	.	.	GT	./.
+NC_002945.4	333369	.	N	.	.	.	.	GT	./.
+NC_002945.4	333370	.	N	.	.	.	.	GT	./.
+NC_002945.4	333371	.	N	.	.	.	.	GT	./.
+NC_002945.4	333372	.	N	.	.	.	.	GT	./.
+NC_002945.4	333373	.	N	.	.	.	.	GT	./.
+NC_002945.4	333374	.	N	.	.	.	.	GT	./.
+NC_002945.4	333375	.	N	.	.	.	.	GT	./.
+NC_002945.4	333376	.	N	.	.	.	.	GT	./.
+NC_002945.4	333377	.	N	.	.	.	.	GT	./.
+NC_002945.4	333378	.	N	.	.	.	.	GT	./.
+NC_002945.4	333379	.	N	.	.	.	.	GT	./.
+NC_002945.4	333380	.	N	.	.	.	.	GT	./.
+NC_002945.4	333381	.	N	.	.	.	.	GT	./.
+NC_002945.4	333382	.	N	.	.	.	.	GT	./.
+NC_002945.4	333383	.	N	.	.	.	.	GT	./.
+NC_002945.4	333384	.	N	.	.	.	.	GT	./.
+NC_002945.4	333385	.	N	.	.	.	.	GT	./.
+NC_002945.4	333386	.	N	.	.	.	.	GT	./.
+NC_002945.4	333387	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2412437	.	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.86;SOR=0.871	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5071,537,0
+NC_002945.4	2418267	.	G	A	6239.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=3.200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.57;ReadPosRankSum=1.035;SOR=0.377	GT:AD:DP:GQ:PL	1/1:1,210:211:99:6268,616,0
+NC_002945.4	2422964	.	G	A	966.77	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.83;QD=34.53;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,28:28:84:995,84,0
+NC_002945.4	2423049	.	T	G	896.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.65;QD=32.55;SOR=1.893	GT:AD:DP:GQ:PL	1/1:0,25:25:75:925,75,0
+NC_002945.4	2425939	.	G	A	7090.77	.	AC=2;AF=1.00;AN=2;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=0.726	GT:AD:DP:GQ:PL	1/1:0,244:244:99:7119,726,0
+NC_002945.4	2426072	.	G	A	7305.77	.	AC=2;AF=1.00;AN=2;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.772	GT:AD:DP:GQ:PL	1/1:0,262:262:99:7334,770,0
+NC_002945.4	2458252	.	C	T	9192.77	.	AC=2;AF=1.00;AN=2;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.91;SOR=0.929	GT:AD:DP:GQ:PL	1/1:0,318:318:99:9221,948,0
+NC_002945.4	2479007	.	C	T	8049.77	.	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.06;SOR=0.760	GT:AD:DP:GQ:PL	1/1:0,277:277:99:8078,826,0
+NC_002945.4	2497022	.	C	G	10187.77	.	AC=2;AF=1.00;AN=2;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.64;SOR=1.068	GT:AD:DP:GQ:PL	1/1:0,322:322:99:10216,960,0
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+NC_002945.4	2508626	.	G	T	7842.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=7.758;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.26;ReadPosRankSum=-0.424;SOR=0.806	GT:AD:DP:GQ:PL	1/1:2,266:268:99:7871,778,0
+NC_002945.4	2512809	.	A	C	8540.77	.	AC=2;AF=1.00;AN=2;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.29;SOR=0.980	GT:AD:DP:GQ:PL	1/1:0,282:282:99:8569,840,0
+NC_002945.4	2513801	.	C	A	4793.77	.	AC=2;AF=1.00;AN=2;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.05;SOR=1.638	GT:AD:DP:GQ:PL	1/1:0,165:165:99:4822,487,0
+NC_002945.4	2515471	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2528517	.	T	C	9471.77	.	AC=2;AF=1.00;AN=2;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=0.857	GT:AD:DP:GQ:PL	1/1:0,314:314:99:9500,935,0
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+NC_002945.4	2532958	.	G	A	6695.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=11.724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.67;ReadPosRankSum=-0.927;SOR=0.818	GT:AD:DP:GQ:PL	1/1:3,239:242:99:6724,681,0
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+NC_002945.4	2665769	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665770	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665771	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665773	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665774	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665775	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665776	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665783	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665787	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665788	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665791	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665796	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665804	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2755931	.	T	G	6960.77	.	AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.47;SOR=1.509	GT:AD:DP:GQ:PL	1/1:0,208:208:99:6989,621,0
+NC_002945.4	2773444	.	G	A	63.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=21.09;SOR=2.833	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
+NC_002945.4	2776121	.	N	.	.	.	.	GT	./.
+NC_002945.4	2776122	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2776124	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2776126	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2998136	.	A	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=444.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-11.131;SOR=8.553	GT:AD:DP:GQ:PL	0/1:175,71:246:99:99,0,3117
+NC_002945.4	3018593	.	G	T	7893.77	.	AC=2;AF=1.00;AN=2;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.01;SOR=0.780	GT:AD:DP:GQ:PL	1/1:0,263:263:99:7922,787,0
+NC_002945.4	3036490	.	C	G	5254.77	.	AC=2;AF=1.00;AN=2;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.85;SOR=0.834	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5283,495,0
+NC_002945.4	3037620	.	C	G	7175.77	.	AC=2;AF=1.00;AN=2;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.77;SOR=1.063	GT:AD:DP:GQ:PL	1/1:0,219:219:99:7204,655,0
+NC_002945.4	3040820	.	A	G	6881.77	.	AC=2;AF=1.00;AN=2;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.73;SOR=0.753	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6910,612,0
+NC_002945.4	3042914	.	T	A	8876.77	.	AC=2;AF=1.00;AN=2;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.01;SOR=1.005	GT:AD:DP:GQ:PL	1/1:0,306:306:99:8905,910,0
+NC_002945.4	3047601	.	A	C	10229.77	.	AC=2;AF=1.00;AN=2;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.971	GT:AD:DP:GQ:PL	1/1:0,331:331:99:10258,991,0
+NC_002945.4	3053649	.	G	A	7805.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=10.058;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.08;ReadPosRankSum=1.447;SOR=0.377	GT:AD:DP:GQ:PL	1/1:3,275:278:99:7834,791,0
+NC_002945.4	3063074	.	A	G	9607.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.20;ReadPosRankSum=-0.757;SOR=0.420	GT:AD:DP:GQ:PL	1/1:1,328:329:99:9636,938,0
+NC_002945.4	3065929	.	A	C	5091.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.31;ReadPosRankSum=-0.668;SOR=0.331	GT:AD:DP:GQ:PL	1/1:1,167:168:99:5120,490,0
+NC_002945.4	3068041	.	A	G	5080.77	.	AC=2;AF=1.00;AN=2;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.71;SOR=0.829	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5109,509,0
+NC_002945.4	3070642	.	C	T	3071.77	.	AC=2;AF=1.00;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.79;SOR=4.332	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3100,254,0
+NC_002945.4	3080843	.	T	C	6017.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQRankSum=2.869;QD=26.28;ReadPosRankSum=2.094;SOR=0.739	GT:AD:DP:GQ:PL	1/1:8,221:229:99:6046,424,0
+NC_002945.4	3092170	.	G	A	9169.77	.	AC=2;AF=1.00;AN=2;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.931	GT:AD:DP:GQ:PL	1/1:0,325:325:99:9198,966,0
+NC_002945.4	3098932	.	T	C	5776.77	.	AC=2;AF=1.00;AN=2;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.45;SOR=1.179	GT:AD:DP:GQ:PL	1/1:0,178:178:99:5805,532,0
+NC_002945.4	3100639	.	G	C	4674.77	.	AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.97;SOR=2.098	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4703,459,0
+NC_002945.4	3103354	.	T	C	6427.77	.	AC=2;AF=1.00;AN=2;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.46;SOR=1.746	GT:AD:DP:GQ:PL	1/1:0,198:198:99:6456,591,0
+NC_002945.4	3137471	.	A	G	7675.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=3.136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.33;ReadPosRankSum=-0.498;SOR=0.329	GT:AD:DP:GQ:PL	1/1:1,244:245:99:7704,723,0
+NC_002945.4	3140342	.	G	T	8580.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.979;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=3.067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.04;ReadPosRankSum=2.826;SOR=0.276	GT:AD:DP:GQ:PL	1/1:1,305:306:99:8609,898,0
+NC_002945.4	3147547	.	G	A	6453.77	.	AC=2;AF=1.00;AN=2;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.12;SOR=0.817	GT:AD:DP:GQ:PL	1/1:0,238:238:99:6482,705,0
+NC_002945.4	3154140	.	T	C	10114.77	.	AC=2;AF=1.00;AN=2;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.47;SOR=0.847	GT:AD:DP:GQ:PL	1/1:0,332:332:99:10143,990,0
+NC_002945.4	3159182	.	G	A	7811.77	.	AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.04;SOR=0.827	GT:AD:DP:GQ:PL	1/1:0,269:269:99:7840,802,0
+NC_002945.4	3173568	.	T	C	6936.77	.	AC=2;AF=1.00;AN=2;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.86;SOR=1.052	GT:AD:DP:GQ:PL	1/1:0,199:199:99:6965,597,0
+NC_002945.4	3203316	.	T	C	10420.77	.	AC=2;AF=1.00;AN=2;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.762	GT:AD:DP:GQ:PL	1/1:0,356:356:99:10449,1060,0
+NC_002945.4	3209298	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209299	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209300	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209301	.	N	.	.	.	.	GT	./.
+NC_002945.4	3211854	.	T	C	6907.77	.	AC=2;AF=1.00;AN=2;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.856	GT:AD:DP:GQ:PL	1/1:0,236:236:99:6936,702,0
+NC_002945.4	3219356	.	N	.	.	.	.	GT	./.
+NC_002945.4	3219357	.	N	.	.	.	.	GT	./.
+NC_002945.4	3225166	.	T	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.377;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=228.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=3.077;SOR=7.903	GT:AD:DP:GQ:PL	0/1:129,51:180:99:123,0,2817
+NC_002945.4	3230333	.	G	A	5302.77	.	AC=2;AF=1.00;AN=2;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.76;SOR=0.814	GT:AD:DP:GQ:PL	1/1:0,191:191:99:5331,567,0
+NC_002945.4	3247623	.	C	T	6755.77	.	AC=2;AF=1.00;AN=2;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.25;SOR=1.234	GT:AD:DP:GQ:PL	1/1:0,231:231:99:6784,687,0
+NC_002945.4	3261792	.	A	G	12178.77	.	AC=2;AF=1.00;AN=2;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.13;SOR=0.794	GT:AD:DP:GQ:PL	1/1:0,433:433:99:12207,1290,0
+NC_002945.4	3267690	.	A	G	8125.77	.	AC=2;AF=1.00;AN=2;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.12;SOR=0.750	GT:AD:DP:GQ:PL	1/1:0,253:253:99:8154,753,0
+NC_002945.4	3270181	.	A	G	9105.77	.	AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.56;SOR=0.719	GT:AD:DP:GQ:PL	1/1:0,308:308:99:9134,919,0
+NC_002945.4	3282696	.	G	A	9245.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=3.103;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.77;ReadPosRankSum=-0.405;SOR=0.301	GT:AD:DP:GQ:PL	1/1:1,332:333:99:9274,974,0
+NC_002945.4	3297745	.	A	T	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.263;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=22.822;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-3.428;QD=8.23;ReadPosRankSum=-4.337;SOR=0.047	GT:AD:DP:GQ:PL	0/1:71,43:114:99:967,0,2866
+NC_002945.4	3329772	.	C	G	7731.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=3.096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.32;ReadPosRankSum=-0.608;SOR=0.299	GT:AD:DP:GQ:PL	1/1:1,254:255:99:7760,750,0
+NC_002945.4	3338298	.	C	G	3356.77	.	AC=2;AF=1.00;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.78;QD=27.07;SOR=1.197	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3385,368,0
+NC_002945.4	3371156	.	A	G	9051.77	.	AC=2;AF=1.00;AN=2;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=0.847	GT:AD:DP:GQ:PL	1/1:0,291:291:99:9080,866,0
+NC_002945.4	3394764	.	A	G	9595.77	.	AC=2;AF=1.00;AN=2;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.26;SOR=0.769	GT:AD:DP:GQ:PL	1/1:0,328:328:99:9624,976,0
+NC_002945.4	3396621	.	G	C	8668.77	.	AC=2;AF=1.00;AN=2;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.31;SOR=0.907	GT:AD:DP:GQ:PL	1/1:0,286:286:99:8697,854,0
+NC_002945.4	3399294	.	G	T	8108.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=3.059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.92;ReadPosRankSum=2.415;SOR=0.270	GT:AD:DP:GQ:PL	1/1:1,270:271:99:8137,795,0
+NC_002945.4	3421983	.	C	T	5464.77	.	AC=2;AF=1.00;AN=2;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.12;SOR=2.069	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5493,493,0
+NC_002945.4	3428078	.	C	T	5462.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.079;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=26.289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=3.211;SOR=1.197	GT:AD:DP:GQ:PL	1/1:6,209:215:99:5491,562,0
+NC_002945.4	3429376	.	A	C	5595.77	.	AC=2;AF=1.00;AN=2;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.33;SOR=1.698	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5624,488,0
+NC_002945.4	3439578	.	G	A	10250.77	.	AC=2;AF=1.00;AN=2;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=0.909	GT:AD:DP:GQ:PL	1/1:0,355:355:99:10279,1056,0
+NC_002945.4	3450988	.	C	T	9125.77	.	AC=2;AF=1.00;AN=2;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.92;SOR=1.156	GT:AD:DP:GQ:PL	1/1:0,305:305:99:9154,907,0
+NC_002945.4	3451869	.	C	A	8997.77	.	AC=2;AF=1.00;AN=2;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.66;SOR=0.706	GT:AD:DP:GQ:PL	1/1:0,314:314:99:9026,929,0
+NC_002945.4	3464524	.	T	C	5370.77	.	AC=2;AF=1.00;AN=2;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.51;SOR=5.361	GT:AD:DP:GQ:PL	1/1:0,138:138:99:5399,414,0
+NC_002945.4	3471404	.	A	G	11021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.13;ReadPosRankSum=-0.717;SOR=1.272	GT:AD:DP:GQ:PL	1/1:2,352:354:99:11050,1033,0
+NC_002945.4	3482644	.	A	T	6350.77	.	AC=2;AF=1.00;AN=2;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.861	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6379,644,0
+NC_002945.4	3484836	.	A	G	9592.77	.	AC=2;AF=1.00;AN=2;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;QD=29.43;SOR=0.782	GT:AD:DP:GQ:PL	1/1:0,326:326:99:9621,971,0
+NC_002945.4	3495510	.	C	T	7253.77	.	AC=2;AF=1.00;AN=2;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.13;SOR=1.055	GT:AD:DP:GQ:PL	1/1:0,249:249:99:7282,738,0
+NC_002945.4	3521264	.	C	T	8800.77	.	AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=0.774	GT:AD:DP:GQ:PL	1/1:0,308:308:99:8829,919,0
+NC_002945.4	3558883	.	G	C	7931.77	.	AC=2;AF=1.00;AN=2;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.61;SOR=2.282	GT:AD:DP:GQ:PL	1/1:0,236:236:99:7960,702,0
+NC_002945.4	3574014	.	T	C	9000.77	.	AC=2;AF=1.00;AN=2;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.14;SOR=1.227	GT:AD:DP:GQ:PL	1/1:0,289:289:99:9029,862,0
+NC_002945.4	3577163	.	G	T	9642.77	.	AC=2;AF=1.00;AN=2;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.25;SOR=1.130	GT:AD:DP:GQ:PL	1/1:0,299:299:99:9671,893,0
+NC_002945.4	3626128	.	T	C	7529.77	.	AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.51;SOR=0.826	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7558,715,0
+NC_002945.4	3629370	.	G	A	8131.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=3.268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.25;ReadPosRankSum=2.075;SOR=0.423	GT:AD:DP:GQ:PL	1/1:1,277:278:99:8160,818,0
+NC_002945.4	3667823	.	A	G	10431.77	.	AC=2;AF=1.00;AN=2;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.03;QD=31.05;SOR=0.742	GT:AD:DP:GQ:PL	1/1:0,336:336:99:10460,1004,0
+NC_002945.4	3695728	.	N	.	.	.	.	GT	./.
+NC_002945.4	3695729	.	N	.	.	.	.	GT	./.
+NC_002945.4	3695730	.	N	.	.	.	.	GT	./.
+NC_002945.4	3695731	.	N	.	.	.	.	GT	./.
+NC_002945.4	3695732	.	N	.	.	.	.	GT	./.
+NC_002945.4	3695733	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3695735	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3980071	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980072	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980073	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980074	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980075	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980076	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980077	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980078	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980079	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980080	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980081	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980082	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980083	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980084	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980085	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980086	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980087	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980088	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980089	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980090	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980091	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980092	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980093	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980094	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980095	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980096	.	N	.	.	.	.	GT	./.
+NC_002945.4	3980097	.	N	.	.	.	.	GT	./.
+NC_002945.4	4007648	.	C	T	5958.77	.	AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.38;SOR=0.970	GT:AD:DP:GQ:PL	1/1:0,210:210:99:5987,623,0
+NC_002945.4	4010760	.	T	C	6949.77	.	AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.03;SOR=0.861	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6978,649,0
+NC_002945.4	4017697	.	G	C	7625.77	.	AC=2;AF=1.00;AN=2;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.778	GT:AD:DP:GQ:PL	1/1:0,269:269:99:7654,798,0
+NC_002945.4	4046956	.	G	A	9476.77	.	AC=2;AF=1.00;AN=2;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=0.865	GT:AD:DP:GQ:PL	1/1:0,326:326:99:9505,974,0
+NC_002945.4	4085392	.	A	G	5041.77	.	AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.61;SOR=1.641	GT:AD:DP:GQ:PL	1/1:0,150:150:99:5070,448,0
+NC_002945.4	4096612	.	T	G	10812.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=3.097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.46;ReadPosRankSum=1.096;SOR=0.296	GT:AD:DP:GQ:PL	1/1:1,354:355:99:10841,1051,0
+NC_002945.4	4107082	.	C	T	3179.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=13.568;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=30.87;ReadPosRankSum=2.652;SOR=2.732	GT:AD:DP:GQ:PL	1/1:2,101:103:99:3208,285,0
+NC_002945.4	4107438	.	G	A	3527.77	.	AC=2;AF=1.00;AN=2;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.91;QD=25.38;SOR=1.510	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3556,404,0
+NC_002945.4	4108797	.	C	T	6930.77	.	AC=2;AF=1.00;AN=2;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.88;SOR=1.484	GT:AD:DP:GQ:PL	1/1:0,240:240:99:6959,708,0
+NC_002945.4	4130927	.	A	C	6203.77	.	AC=2;AF=1.00;AN=2;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.02;SOR=0.911	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6232,597,0
+NC_002945.4	4149101	.	C	A	9931.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=3.218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.04;ReadPosRankSum=-0.409;SOR=0.385	GT:AD:DP:GQ:PL	1/1:1,341:342:99:9960,1009,0
+NC_002945.4	4160782	.	A	G	10900.77	.	AC=2;AF=1.00;AN=2;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.53;SOR=0.745	GT:AD:DP:GQ:PL	1/1:0,357:357:99:10929,1066,0
+NC_002945.4	4162554	.	T	C	5497.77	.	AC=2;AF=1.00;AN=2;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.53;SOR=0.729	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5526,506,0
+NC_002945.4	4173149	.	G	A	7268.77	.	AC=2;AF=1.00;AN=2;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.45;SOR=3.496	GT:AD:DP:GQ:PL	1/1:0,211:211:99:7297,623,0
+NC_002945.4	4178582	.	C	T	9122.77	.	AC=2;AF=1.00;AN=2;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.43;SOR=0.732	GT:AD:DP:GQ:PL	1/1:0,310:310:99:9151,925,0
+NC_002945.4	4180986	.	A	G	8466.77	.	AC=2;AF=1.00;AN=2;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.90;SOR=0.900	GT:AD:DP:GQ:PL	1/1:0,274:274:99:8495,820,0
+NC_002945.4	4191866	.	G	A	11591.77	.	AC=2;AF=1.00;AN=2;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.27;SOR=0.703	GT:AD:DP:GQ:PL	1/1:0,396:396:99:11620,1182,0
+NC_002945.4	4215627	.	C	T	8118.77	.	AC=2;AF=1.00;AN=2;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.19;SOR=0.825	GT:AD:DP:GQ:PL	1/1:0,288:288:99:8147,856,0
+NC_002945.4	4259281	.	T	C	2243.77	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=39.70;QD=31.41;SOR=8.051	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2272,164,0
+NC_002945.4	4293934	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293935	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293936	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293937	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293938	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293939	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293940	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293941	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293942	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293943	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293944	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293945	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293946	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293947	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293948	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293949	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293950	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293951	.	N	.	.	.	.	GT	./.
+NC_002945.4	4293952	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294031	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294032	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294033	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294034	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294035	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294036	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294037	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294038	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294039	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294040	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294041	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294042	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294043	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294044	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294045	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294046	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294047	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294048	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294049	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294050	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294051	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294052	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294053	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294054	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294055	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294056	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294057	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294058	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294059	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294060	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294061	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294062	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294063	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294064	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294065	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294066	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294067	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294068	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294069	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294070	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294071	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294072	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294073	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294074	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294075	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294076	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294077	.	N	.	.	.	.	GT	./.
+NC_002945.4	4298265	.	T	C	5021.77	.	AC=2;AF=1.00;AN=2;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.04;SOR=0.774	GT:AD:DP:GQ:PL	1/1:0,152:152:99:5050,454,0
+NC_002945.4	4311302	.	C	T	10501.77	.	AC=2;AF=1.00;AN=2;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.18;SOR=0.740	GT:AD:DP:GQ:PL	1/1:0,348:348:99:10530,1036,0
+NC_002945.4	4311425	.	C	T	9110.77	.	AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.48;SOR=0.823	GT:AD:DP:GQ:PL	1/1:0,309:309:99:9139,923,0
+NC_002945.4	4321337	.	T	C	8414.77	.	AC=2;AF=1.00;AN=2;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.28;SOR=0.949	GT:AD:DP:GQ:PL	1/1:0,269:269:99:8443,805,0
+NC_002945.4	4339036	.	T	G	6217.77	.	AC=2;AF=1.00;AN=2;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.88;SOR=0.877	GT:AD:DP:GQ:PL	1/1:0,223:223:99:6246,660,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/02_0585_COA_TX_Fed.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/02_0585_COA_TX_Fed.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,6943 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=LowQual,Description="Low quality">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.8-0-ge9d806836,Date="Sat Dec 23 17:42:05 CST 2017",Epoch=1514072525658,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-0585/02-0585-quality.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-0585/NC_002945v4.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false out=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-0585/02-0585-hapall.vcf likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[] excludeAnnotation=[] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=true numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=true captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
+##contig=<ID=NC_002945.4,length=4349904>
+##reference=file:///scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-0585/NC_002945v4.fasta
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	02-0585
+NC_002945.4	1057	.	A	G	1996.77	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.60;SOR=0.976	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2025,229,0
+NC_002945.4	8741	.	T	C	3395.77	.	AC=2;AF=1.00;AN=2;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.83;SOR=0.726	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3424,360,0
+NC_002945.4	33788	.	A	G	2576.77	.	AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.24;SOR=6.091	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2605,192,0
+NC_002945.4	41437	.	T	C	3407.77	.	AC=2;AF=1.00;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=0.728	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3436,343,0
+NC_002945.4	67098	.	G	A	3616.77	.	AC=2;AF=1.00;AN=2;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.26;SOR=0.724	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3645,381,0
+NC_002945.4	69913	.	T	C	4863.77	.	AC=2;AF=1.00;AN=2;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.12;SOR=0.805	GT:AD:DP:GQ:PL	1/1:0,167:167:99:4892,494,0
+NC_002945.4	72105	.	C	G	3686.77	.	AC=2;AF=1.00;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.63;SOR=0.784	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3715,337,0
+NC_002945.4	79288	.	C	G	3432.77	.	AC=2;AF=1.00;AN=2;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.81;SOR=0.802	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3461,391,0
+NC_002945.4	103928	.	G	C	1644.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=51.19;QD=29.09;SOR=3.202	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1673,117,0
+NC_002945.4	103931	.	G	C	1524.77	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.88;QD=32.93;SOR=3.321	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1553,105,0
+NC_002945.4	119328	.	G	T	3237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.91;ReadPosRankSum=1.955;SOR=0.976	GT:AD:DP:GQ:PL	1/1:2,110:112:99:3266,287,0
+NC_002945.4	127447	.	G	C	3007.77	.	AC=2;AF=1.00;AN=2;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.33;SOR=1.313	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3036,286,0
+NC_002945.4	130237	.	T	C	4147.77	.	AC=2;AF=1.00;AN=2;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.72;SOR=1.441	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4176,403,0
+NC_002945.4	131617	.	T	C	4973.77	.	AC=2;AF=1.00;AN=2;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.09;SOR=1.120	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5002,507,0
+NC_002945.4	136900	.	T	G	3085.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3114,310,0
+NC_002945.4	139569	.	A	G	1920.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.25;ReadPosRankSum=-0.492;SOR=0.288	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1949,191,0
+NC_002945.4	149997	.	N	.	.	.	.	GT	./.
+NC_002945.4	149998	.	N	.	.	.	.	GT	./.
+NC_002945.4	149999	.	N	.	.	.	.	GT	./.
+NC_002945.4	150000	.	N	.	.	.	.	GT	./.
+NC_002945.4	150001	.	N	.	.	.	.	GT	./.
+NC_002945.4	150002	.	N	.	.	.	.	GT	./.
+NC_002945.4	150003	.	N	.	.	.	.	GT	./.
+NC_002945.4	150004	.	N	.	.	.	.	GT	./.
+NC_002945.4	150005	.	N	.	.	.	.	GT	./.
+NC_002945.4	150006	.	N	.	.	.	.	GT	./.
+NC_002945.4	150007	.	N	.	.	.	.	GT	./.
+NC_002945.4	150008	.	N	.	.	.	.	GT	./.
+NC_002945.4	150061	.	N	.	.	.	.	GT	./.
+NC_002945.4	150062	.	N	.	.	.	.	GT	./.
+NC_002945.4	150063	.	N	.	.	.	.	GT	./.
+NC_002945.4	150064	.	N	.	.	.	.	GT	./.
+NC_002945.4	150065	.	N	.	.	.	.	GT	./.
+NC_002945.4	150066	.	N	.	.	.	.	GT	./.
+NC_002945.4	150067	.	N	.	.	.	.	GT	./.
+NC_002945.4	150068	.	N	.	.	.	.	GT	./.
+NC_002945.4	150069	.	N	.	.	.	.	GT	./.
+NC_002945.4	150070	.	N	.	.	.	.	GT	./.
+NC_002945.4	150071	.	N	.	.	.	.	GT	./.
+NC_002945.4	150072	.	N	.	.	.	.	GT	./.
+NC_002945.4	150073	.	N	.	.	.	.	GT	./.
+NC_002945.4	150074	.	N	.	.	.	.	GT	./.
+NC_002945.4	152355	.	G	T	2756.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.008;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=9.280;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=-1.223;SOR=0.203	GT:AD:DP:GQ:PL	1/1:3,104:107:99:2785,285,0
+NC_002945.4	159370	.	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.77;SOR=0.855	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2828,272,0
+NC_002945.4	160535	.	T	C	3002.77	.	AC=2;AF=1.00;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.44;SOR=1.212	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3031,303,0
+NC_002945.4	165799	.	G	A	2597.77	.	AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.52;SOR=0.786	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2626,262,0
+NC_002945.4	166696	.	A	G	3285.77	.	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.42;SOR=0.892	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3314,321,0
+NC_002945.4	175486	.	N	.	.	.	.	GT	./.
+NC_002945.4	175487	.	N	.	.	.	.	GT	./.
+NC_002945.4	175488	.	N	.	.	.	.	GT	./.
+NC_002945.4	175489	.	N	.	.	.	.	GT	./.
+NC_002945.4	175490	.	N	.	.	.	.	GT	./.
+NC_002945.4	175491	.	N	.	.	.	.	GT	./.
+NC_002945.4	175492	.	N	.	.	.	.	GT	./.
+NC_002945.4	175493	.	N	.	.	.	.	GT	./.
+NC_002945.4	175494	.	N	.	.	.	.	GT	./.
+NC_002945.4	175495	.	N	.	.	.	.	GT	./.
+NC_002945.4	175496	.	N	.	.	.	.	GT	./.
+NC_002945.4	175497	.	N	.	.	.	.	GT	./.
+NC_002945.4	175498	.	N	.	.	.	.	GT	./.
+NC_002945.4	175499	.	N	.	.	.	.	GT	./.
+NC_002945.4	175500	.	N	.	.	.	.	GT	./.
+NC_002945.4	175501	.	N	.	.	.	.	GT	./.
+NC_002945.4	175502	.	N	.	.	.	.	GT	./.
+NC_002945.4	175503	.	N	.	.	.	.	GT	./.
+NC_002945.4	175504	.	N	.	.	.	.	GT	./.
+NC_002945.4	175505	.	N	.	.	.	.	GT	./.
+NC_002945.4	175506	.	N	.	.	.	.	GT	./.
+NC_002945.4	175507	.	N	.	.	.	.	GT	./.
+NC_002945.4	175508	.	N	.	.	.	.	GT	./.
+NC_002945.4	175509	.	N	.	.	.	.	GT	./.
+NC_002945.4	176039	.	N	.	.	.	.	GT	./.
+NC_002945.4	176040	.	N	.	.	.	.	GT	./.
+NC_002945.4	176041	.	N	.	.	.	.	GT	./.
+NC_002945.4	176042	.	N	.	.	.	.	GT	./.
+NC_002945.4	176043	.	N	.	.	.	.	GT	./.
+NC_002945.4	176044	.	N	.	.	.	.	GT	./.
+NC_002945.4	176045	.	N	.	.	.	.	GT	./.
+NC_002945.4	176046	.	N	.	.	.	.	GT	./.
+NC_002945.4	176047	.	N	.	.	.	.	GT	./.
+NC_002945.4	176048	.	N	.	.	.	.	GT	./.
+NC_002945.4	176049	.	N	.	.	.	.	GT	./.
+NC_002945.4	176050	.	N	.	.	.	.	GT	./.
+NC_002945.4	176051	.	N	.	.	.	.	GT	./.
+NC_002945.4	176052	.	N	.	.	.	.	GT	./.
+NC_002945.4	176053	.	N	.	.	.	.	GT	./.
+NC_002945.4	176054	.	N	.	.	.	.	GT	./.
+NC_002945.4	176055	.	N	.	.	.	.	GT	./.
+NC_002945.4	176056	.	N	.	.	.	.	GT	./.
+NC_002945.4	176057	.	N	.	.	.	.	GT	./.
+NC_002945.4	176058	.	N	.	.	.	.	GT	./.
+NC_002945.4	176059	.	N	.	.	.	.	GT	./.
+NC_002945.4	176060	.	N	.	.	.	.	GT	./.
+NC_002945.4	176061	.	N	.	.	.	.	GT	./.
+NC_002945.4	176062	.	N	.	.	.	.	GT	./.
+NC_002945.4	176063	.	N	.	.	.	.	GT	./.
+NC_002945.4	176064	.	N	.	.	.	.	GT	./.
+NC_002945.4	176065	.	N	.	.	.	.	GT	./.
+NC_002945.4	176066	.	N	.	.	.	.	GT	./.
+NC_002945.4	176067	.	N	.	.	.	.	GT	./.
+NC_002945.4	176068	.	N	.	.	.	.	GT	./.
+NC_002945.4	176069	.	N	.	.	.	.	GT	./.
+NC_002945.4	176070	.	N	.	.	.	.	GT	./.
+NC_002945.4	176071	.	N	.	.	.	.	GT	./.
+NC_002945.4	176072	.	N	.	.	.	.	GT	./.
+NC_002945.4	176073	.	N	.	.	.	.	GT	./.
+NC_002945.4	176074	.	N	.	.	.	.	GT	./.
+NC_002945.4	176075	.	N	.	.	.	.	GT	./.
+NC_002945.4	176076	.	N	.	.	.	.	GT	./.
+NC_002945.4	176077	.	N	.	.	.	.	GT	./.
+NC_002945.4	176078	.	N	.	.	.	.	GT	./.
+NC_002945.4	176079	.	N	.	.	.	.	GT	./.
+NC_002945.4	176080	.	N	.	.	.	.	GT	./.
+NC_002945.4	176081	.	N	.	.	.	.	GT	./.
+NC_002945.4	176082	.	N	.	.	.	.	GT	./.
+NC_002945.4	176083	.	N	.	.	.	.	GT	./.
+NC_002945.4	176084	.	N	.	.	.	.	GT	./.
+NC_002945.4	176085	.	N	.	.	.	.	GT	./.
+NC_002945.4	176086	.	N	.	.	.	.	GT	./.
+NC_002945.4	176087	.	N	.	.	.	.	GT	./.
+NC_002945.4	176088	.	N	.	.	.	.	GT	./.
+NC_002945.4	176089	.	N	.	.	.	.	GT	./.
+NC_002945.4	176090	.	N	.	.	.	.	GT	./.
+NC_002945.4	176091	.	N	.	.	.	.	GT	./.
+NC_002945.4	176092	.	N	.	.	.	.	GT	./.
+NC_002945.4	176093	.	N	.	.	.	.	GT	./.
+NC_002945.4	176094	.	N	.	.	.	.	GT	./.
+NC_002945.4	176095	.	N	.	.	.	.	GT	./.
+NC_002945.4	176096	.	N	.	.	.	.	GT	./.
+NC_002945.4	176097	.	N	.	.	.	.	GT	./.
+NC_002945.4	176098	.	N	.	.	.	.	GT	./.
+NC_002945.4	176099	.	N	.	.	.	.	GT	./.
+NC_002945.4	176100	.	N	.	.	.	.	GT	./.
+NC_002945.4	176101	.	N	.	.	.	.	GT	./.
+NC_002945.4	176102	.	N	.	.	.	.	GT	./.
+NC_002945.4	176103	.	N	.	.	.	.	GT	./.
+NC_002945.4	176104	.	N	.	.	.	.	GT	./.
+NC_002945.4	176105	.	N	.	.	.	.	GT	./.
+NC_002945.4	176106	.	N	.	.	.	.	GT	./.
+NC_002945.4	176107	.	N	.	.	.	.	GT	./.
+NC_002945.4	176108	.	N	.	.	.	.	GT	./.
+NC_002945.4	176109	.	N	.	.	.	.	GT	./.
+NC_002945.4	176110	.	N	.	.	.	.	GT	./.
+NC_002945.4	176111	.	N	.	.	.	.	GT	./.
+NC_002945.4	176112	.	N	.	.	.	.	GT	./.
+NC_002945.4	176113	.	N	.	.	.	.	GT	./.
+NC_002945.4	176114	.	N	.	.	.	.	GT	./.
+NC_002945.4	176115	.	N	.	.	.	.	GT	./.
+NC_002945.4	176116	.	N	.	.	.	.	GT	./.
+NC_002945.4	176117	.	N	.	.	.	.	GT	./.
+NC_002945.4	176118	.	N	.	.	.	.	GT	./.
+NC_002945.4	176119	.	N	.	.	.	.	GT	./.
+NC_002945.4	176120	.	N	.	.	.	.	GT	./.
+NC_002945.4	176121	.	N	.	.	.	.	GT	./.
+NC_002945.4	176122	.	N	.	.	.	.	GT	./.
+NC_002945.4	176123	.	N	.	.	.	.	GT	./.
+NC_002945.4	176124	.	N	.	.	.	.	GT	./.
+NC_002945.4	176125	.	N	.	.	.	.	GT	./.
+NC_002945.4	176126	.	N	.	.	.	.	GT	./.
+NC_002945.4	176127	.	N	.	.	.	.	GT	./.
+NC_002945.4	176128	.	N	.	.	.	.	GT	./.
+NC_002945.4	176129	.	N	.	.	.	.	GT	./.
+NC_002945.4	176130	.	N	.	.	.	.	GT	./.
+NC_002945.4	176131	.	N	.	.	.	.	GT	./.
+NC_002945.4	176132	.	N	.	.	.	.	GT	./.
+NC_002945.4	176133	.	N	.	.	.	.	GT	./.
+NC_002945.4	176134	.	N	.	.	.	.	GT	./.
+NC_002945.4	176135	.	N	.	.	.	.	GT	./.
+NC_002945.4	176136	.	N	.	.	.	.	GT	./.
+NC_002945.4	176137	.	N	.	.	.	.	GT	./.
+NC_002945.4	176138	.	N	.	.	.	.	GT	./.
+NC_002945.4	176139	.	N	.	.	.	.	GT	./.
+NC_002945.4	176140	.	N	.	.	.	.	GT	./.
+NC_002945.4	176141	.	N	.	.	.	.	GT	./.
+NC_002945.4	176142	.	N	.	.	.	.	GT	./.
+NC_002945.4	176143	.	N	.	.	.	.	GT	./.
+NC_002945.4	176144	.	N	.	.	.	.	GT	./.
+NC_002945.4	176145	.	N	.	.	.	.	GT	./.
+NC_002945.4	176146	.	N	.	.	.	.	GT	./.
+NC_002945.4	176147	.	N	.	.	.	.	GT	./.
+NC_002945.4	176148	.	N	.	.	.	.	GT	./.
+NC_002945.4	176149	.	N	.	.	.	.	GT	./.
+NC_002945.4	176150	.	N	.	.	.	.	GT	./.
+NC_002945.4	176151	.	N	.	.	.	.	GT	./.
+NC_002945.4	176152	.	N	.	.	.	.	GT	./.
+NC_002945.4	176153	.	N	.	.	.	.	GT	./.
+NC_002945.4	176154	.	N	.	.	.	.	GT	./.
+NC_002945.4	176155	.	N	.	.	.	.	GT	./.
+NC_002945.4	176156	.	N	.	.	.	.	GT	./.
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+NC_002945.4	339207	.	C	T	907.77	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.62;SOR=3.690	GT:AD:DP:GQ:PL	1/1:0,27:27:80:936,80,0
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+NC_002945.4	362818	.	T	C	360.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.42;QD=29.43;SOR=3.056	GT:AD:DP:GQ:PL	1/1:0,9:9:27:389,27,0
+NC_002945.4	363066	.	C	A	19.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.671;SOR=0.307	GT:AD:DP:GQ:PL	0/1:10,2:12:48:48,0,247
+NC_002945.4	363800	.	N	.	.	.	.	GT	./.
+NC_002945.4	363801	.	N	.	.	.	.	GT	./.
+NC_002945.4	363802	.	N	.	.	.	.	GT	./.
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+NC_002945.4	363804	.	N	.	.	.	.	GT	./.
+NC_002945.4	363805	.	N	.	.	.	.	GT	./.
+NC_002945.4	363806	.	N	.	.	.	.	GT	./.
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+NC_002945.4	364560	.	A	G	4417.77	.	AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.93;QD=30.89;SOR=0.735	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4446,427,0
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+NC_002945.4	364938	.	A	G	4423.77	.	AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.91;SOR=1.036	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4452,452,0
+NC_002945.4	365558	.	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.73;SOR=1.545	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2352,212,0
+NC_002945.4	366022	.	T	C	3604.77	.	AC=2;AF=1.00;AN=2;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.35;SOR=0.782	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3633,344,0
+NC_002945.4	385039	.	T	G	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.131;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=177.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.483;SOR=7.167	GT:AD:DP:GQ:PL	0/1:90,35:125:99:130,0,1632
+NC_002945.4	411310	.	N	.	.	.	.	GT	./.
+NC_002945.4	425180	.	C	G	2435.77	.	AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=1.329	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2464,254,0
+NC_002945.4	430077	.	C	T	2005.77	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.86;SOR=0.749	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2034,213,0
+NC_002945.4	441762	.	C	T	2491.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.64;ReadPosRankSum=1.512;SOR=0.284	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2520,249,0
+NC_002945.4	444468	.	A	G	3480.77	.	AC=2;AF=1.00;AN=2;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.75;SOR=0.856	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3509,346,0
+NC_002945.4	467343	.	C	T	3892.77	.	AC=2;AF=1.00;AN=2;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.90;QD=27.41;SOR=0.976	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3921,418,0
+NC_002945.4	470216	.	T	G	4150.77	.	AC=2;AF=1.00;AN=2;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.44;SOR=0.796	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4179,420,0
+NC_002945.4	490878	.	G	A	1540.77	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.01;SOR=0.804	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1569,163,0
+NC_002945.4	507929	.	T	C	3873.77	.	AC=2;AF=1.00;AN=2;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.13;SOR=0.708	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3902,397,0
+NC_002945.4	519412	.	T	C	2956.77	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.79;SOR=1.440	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2985,275,0
+NC_002945.4	544180	.	C	T	3250.77	.	AC=2;AF=1.00;AN=2;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.52;SOR=1.149	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3279,337,0
+NC_002945.4	545772	.	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.75;SOR=1.157	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2859,302,0
+NC_002945.4	598704	.	C	G	2513.77	.	AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.57;SOR=0.887	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2542,260,0
+NC_002945.4	611077	.	A	G	3958.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=3.849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=26.75;ReadPosRankSum=-0.408;SOR=0.846	GT:AD:DP:GQ:PL	1/1:1,147:148:99:3987,426,0
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+NC_002945.4	1656339	.	G	A	3382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=3.261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.06;ReadPosRankSum=2.286;SOR=0.432	GT:AD:DP:GQ:PL	1/1:1,124:125:99:3411,354,0
+NC_002945.4	1677471	.	C	G	3897.77	.	AC=2;AF=1.00;AN=2;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.95;SOR=0.986	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3926,366,0
+NC_002945.4	1690441	.	G	A	1405.77	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.56;SOR=0.729	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1434,161,0
+NC_002945.4	1694081	.	G	A	1153.77	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.84;SOR=1.151	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1182,119,0
+NC_002945.4	1717086	.	T	C	2442.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.40;SOR=0.839	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2471,253,0
+NC_002945.4	1722022	.	C	A	2409.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.867	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2438,253,0
+NC_002945.4	1724280	.	C	T	3187.77	.	AC=2;AF=1.00;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.72;SOR=0.865	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3216,329,0
+NC_002945.4	1744987	.	T	G	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=4.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.947;SOR=0.513	GT:AD:DP:GQ:PL	0/1:34,52:86:99:1216,0,762
+NC_002945.4	1753812	.	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.96;SOR=0.994	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2936,308,0
+NC_002945.4	1803035	.	C	T	2834.77	.	AC=2;AF=1.00;AN=2;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.79;SOR=0.815	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2863,304,0
+NC_002945.4	1833330	.	A	G	3448.77	.	AC=2;AF=1.00;AN=2;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.25;SOR=1.054	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3477,339,0
+NC_002945.4	1865339	.	T	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=43.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.581;SOR=4.797	GT:AD:DP:GQ:PL	0/1:22,10:32:64:64,0,457
+NC_002945.4	1878223	.	G	A	3383.77	.	AC=2;AF=1.00;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.86;SOR=0.725	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3412,370,0
+NC_002945.4	1880869	.	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.14;SOR=0.922	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1828,168,0
+NC_002945.4	1915122	.	C	T	1230.77	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.35;SOR=0.829	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1259,132,0
+NC_002945.4	1915461	.	G	C	2441.77	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=2.455	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2470,232,0
+NC_002945.4	1915936	.	A	G	2764.77	.	AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.83;QD=31.06;SOR=1.557	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2793,266,0
+NC_002945.4	1920100	.	T	C	2633.77	.	AC=2;AF=1.00;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.59;SOR=1.080	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2662,264,0
+NC_002945.4	1932972	.	A	G	2718.77	.	AC=2;AF=1.00;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.88;SOR=1.191	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2747,270,0
+NC_002945.4	1955257	.	G	A	4687.77	.	AC=2;AF=1.00;AN=2;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.64;SOR=0.716	GT:AD:DP:GQ:PL	1/1:0,176:176:99:4716,516,0
+NC_002945.4	1957978	.	T	G	4113.77	.	AC=2;AF=1.00;AN=2;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=0.812	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4142,416,0
+NC_002945.4	1958977	.	A	T	3712.77	.	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.38;SOR=1.077	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3741,322,0
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+NC_002945.4	1971928	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972003	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972004	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972005	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972006	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972007	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972008	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972009	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972010	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972012	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972013	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972016	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972017	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972018	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972020	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972021	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972023	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986781	.	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.366;SOR=0.446	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,204
+NC_002945.4	1986865	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2056923	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2056927	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056928	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2056931	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056932	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056933	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2056942	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2056945	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056946	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056947	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056948	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056949	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056950	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056951	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056952	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056953	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056954	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2056956	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056957	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056958	.	N	.	.	.	.	GT	./.
+NC_002945.4	2056959	.	N	.	.	.	.	GT	./.
+NC_002945.4	2057553	.	G	A	3007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=3.736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.92;ReadPosRankSum=1.728;SOR=0.776	GT:AD:DP:GQ:PL	1/1:1,103:104:99:3036,295,0
+NC_002945.4	2059249	.	G	A	4018.77	.	AC=2;AF=1.00;AN=2;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.10;SOR=0.825	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4047,423,0
+NC_002945.4	2059920	.	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=0.771	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3875,389,0
+NC_002945.4	2060089	.	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=0.760	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2674,271,0
+NC_002945.4	2075405	.	C	T	2906.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=3.052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.68;ReadPosRankSum=-0.292;SOR=0.284	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2935,300,0
+NC_002945.4	2089475	.	C	T	3783.77	.	AC=2;AF=1.00;AN=2;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.79;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3812,376,0
+NC_002945.4	2095474	.	C	T	2148.77	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.76;QD=27.91;SOR=0.887	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2177,226,0
+NC_002945.4	2099043	.	T	C	2202.77	.	AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.61;SOR=1.300	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2231,227,0
+NC_002945.4	2108042	.	G	A	3388.77	.	AC=2;AF=1.00;AN=2;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.95;QD=26.68;SOR=1.206	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3417,373,0
+NC_002945.4	2108312	.	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.03;SOR=0.997	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3336,351,0
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+NC_002945.4	2140760	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140761	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140762	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2140765	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2140767	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140768	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140769	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140770	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140771	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140772	.	N	.	.	.	.	GT	./.
+NC_002945.4	2140773	.	N	.	.	.	.	GT	./.
+NC_002945.4	2145868	.	T	C	3555.77	.	AC=2;AF=1.00;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.92;SOR=0.808	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3584,322,0
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+NC_002945.4	2158305	.	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=7.607;MLEAC=1;MLEAF=0.500;MQ=49.12;MQRankSum=-0.687;QD=4.80;ReadPosRankSum=1.598;SOR=1.108	GT:AD:DP:GQ:PL	0/1:25,6:31:99:177,0,3367
+NC_002945.4	2158307	.	G	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=7.607;MLEAC=1;MLEAF=0.500;MQ=49.12;MQRankSum=-0.687;QD=4.80;ReadPosRankSum=-0.583;SOR=1.108	GT:AD:DP:GQ:PL	0/1:25,6:31:99:177,0,3367
+NC_002945.4	2161367	.	C	T	484.77	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.58;QD=25.51;SOR=1.022	GT:AD:DP:GQ:PL	1/1:0,19:19:56:513,56,0
+NC_002945.4	2193109	.	C	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-7.068;QD=2.85;ReadPosRankSum=0.697;SOR=0.734	GT:AD:DP:GQ:PL	0/1:101,33:134:99:410,0,2804
+NC_002945.4	2215255	.	G	A	1591.77	.	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.53;SOR=2.226	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1620,172,0
+NC_002945.4	2222708	.	C	G	2792.77	.	AC=2;AF=1.00;AN=2;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.71;SOR=0.976	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2821,280,0
+NC_002945.4	2244454	.	C	G	1498.77	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.39;SOR=0.732	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1527,152,0
+NC_002945.4	2246992	.	C	G	2497.77	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.62;SOR=0.941	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2526,235,0
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+NC_002945.4	3083614	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083615	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083616	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083617	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083618	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083619	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083620	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083621	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083622	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083623	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083624	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083625	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083626	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083627	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083628	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083629	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083630	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083631	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083632	.	N	.	.	.	.	GT	./.
+NC_002945.4	3098932	.	T	C	2854.77	.	AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.59;SOR=0.765	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2883,254,0
+NC_002945.4	3100639	.	G	C	1838.77	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;QD=27.04;SOR=1.981	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1867,197,0
+NC_002945.4	3103354	.	T	C	2513.77	.	AC=2;AF=1.00;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.03;SOR=1.124	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2542,240,0
+NC_002945.4	3137471	.	A	G	2051.77	.	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.36;SOR=0.719	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2080,221,0
+NC_002945.4	3140342	.	G	T	3728.77	.	AC=2;AF=1.00;AN=2;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.32;SOR=0.812	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3757,366,0
+NC_002945.4	3154140	.	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.86;SOR=0.756	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3216,290,0
+NC_002945.4	3159182	.	G	A	2902.77	.	AC=2;AF=1.00;AN=2;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.65;SOR=0.833	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2931,308,0
+NC_002945.4	3173568	.	T	C	2350.77	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.07;SOR=1.054	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2379,205,0
+NC_002945.4	3193460	.	G	T	5815.77	.	AC=2;AF=1.00;AN=2;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.73;SOR=0.708	GT:AD:DP:GQ:PL	1/1:0,135:135:99:5844,406,0
+NC_002945.4	3193461	.	G	T	5815.77	.	AC=2;AF=1.00;AN=2;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.88;SOR=0.708	GT:AD:DP:GQ:PL	1/1:0,135:135:99:5844,406,0
+NC_002945.4	3193631	.	A	G	2257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=16.204;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=6.671;QD=24.54;ReadPosRankSum=3.998;SOR=0.040	GT:AD:DP:GQ:PL	0/1:12,80:92:99:2286,0,111
+NC_002945.4	3203316	.	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.04;SOR=0.755	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3862,394,0
+NC_002945.4	3209281	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209282	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209283	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3209294	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209295	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3209300	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3270181	.	A	G	2094.77	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.55;SOR=0.742	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2123,241,0
+NC_002945.4	3282696	.	G	A	3229.77	.	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.06;SOR=0.772	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3258,309,0
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+NC_002945.4	3297745	.	A	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=9.718;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.549;QD=3.71;ReadPosRankSum=1.201;SOR=2.871	GT:AD:DP:GQ:PL	0/1:60,16:76:99:310,0,1568
+NC_002945.4	3301125	.	G	A	2354.77	.	AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.76;SOR=1.609	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2383,260,0
+NC_002945.4	3329772	.	C	G	3747.77	.	AC=2;AF=1.00;AN=2;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.59;SOR=0.984	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3776,344,0
+NC_002945.4	3338105	.	T	G	1334.77	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.51;QD=31.04;SOR=0.836	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1363,128,0
+NC_002945.4	3338298	.	C	G	1860.77	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.86;QD=25.84;SOR=1.675	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1889,211,0
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+NC_002945.4	3394764	.	A	G	4243.77	.	AC=2;AF=1.00;AN=2;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.53;SOR=0.797	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4272,412,0
+NC_002945.4	3396621	.	G	C	3836.77	.	AC=2;AF=1.00;AN=2;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.74;SOR=0.740	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3865,384,0
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+NC_002945.4	3439578	.	G	A	2440.77	.	AC=2;AF=1.00;AN=2;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.98;QD=25.97;SOR=0.874	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2469,277,0
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+NC_002945.4	4085392	.	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.13;SOR=1.148	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3312,322,0
+NC_002945.4	4096612	.	T	G	3836.77	.	AC=2;AF=1.00;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.86;QD=30.69;SOR=0.920	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3865,372,0
+NC_002945.4	4107438	.	G	A	1869.77	.	AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=24.93;SOR=0.892	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1898,217,0
+NC_002945.4	4120001	.	G	A	2825.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.43;SOR=0.752	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2854,302,0
+NC_002945.4	4130927	.	A	C	2709.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.51;SOR=1.127	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2738,256,0
+NC_002945.4	4134821	.	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.97;SOR=0.844	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2096,205,0
+NC_002945.4	4143291	.	T	G	12.05	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.273;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=112.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.11;ReadPosRankSum=2.476;SOR=6.665	GT:AD:DP:GQ:PL	0/1:86,27:113:40:40,0,1832
+NC_002945.4	4149101	.	C	A	3039.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.23;SOR=0.732	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3068,309,0
+NC_002945.4	4160782	.	A	G	4073.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.31;ReadPosRankSum=-1.371;SOR=0.898	GT:AD:DP:GQ:PL	1/1:2,137:139:99:4102,365,0
+NC_002945.4	4162554	.	T	C	2551.77	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.50;SOR=1.058	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2580,241,0
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+NC_002945.4	4191866	.	G	A	3035.77	.	AC=2;AF=1.00;AN=2;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.06;SOR=0.839	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3064,302,0
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+NC_002945.4	4216874	.	T	C	4124.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.25;ReadPosRankSum=-0.508;SOR=0.368	GT:AD:DP:GQ:PL	1/1:1,145:146:99:4153,423,0
+NC_002945.4	4231384	.	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.60;SOR=0.820	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2831,288,0
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+NC_002945.4	4294083	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294084	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294085	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294086	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294087	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294088	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294089	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294090	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294091	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294092	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294093	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294094	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294095	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294096	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294097	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294098	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294099	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294100	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294101	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294102	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294103	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294104	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294105	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294106	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294107	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294108	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294109	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294110	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294111	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294112	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294113	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294114	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294115	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294116	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294117	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294118	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294119	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294120	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294121	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294122	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294123	.	N	.	.	.	.	GT	./.
+NC_002945.4	4294124	.	N	.	.	.	.	GT	./.
+NC_002945.4	4298265	.	T	C	4191.77	.	AC=2;AF=1.00;AN=2;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.87;QD=29.31;SOR=0.794	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4220,424,0
+NC_002945.4	4305930	.	G	A	4177.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.23;ReadPosRankSum=-0.374;SOR=0.400	GT:AD:DP:GQ:PL	1/1:1,147:148:99:4206,428,0
+NC_002945.4	4310050	.	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.37;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2296,252,0
+NC_002945.4	4311425	.	C	T	4213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.800;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=3.514;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=28.86;ReadPosRankSum=-0.328;SOR=0.611	GT:AD:DP:GQ:PL	1/1:1,145:146:99:4242,422,0
+NC_002945.4	4319929	.	C	T	1901.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQRankSum=0.000;QD=26.05;ReadPosRankSum=-0.279;SOR=0.358	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1930,200,0
+NC_002945.4	4321337	.	T	C	2977.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.63;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3006,257,0
+NC_002945.4	4323997	.	C	A	2486.77	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.88;SOR=1.580	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2515,233,0
+NC_002945.4	4327440	.	G	C	3020.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.62;ReadPosRankSum=-0.525;SOR=0.248	GT:AD:DP:GQ:PL	1/1:1,101:102:99:3049,291,0
+NC_002945.4	4339036	.	T	G	2974.77	.	AC=2;AF=1.00;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.16;SOR=1.000	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3003,303,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/02_5877_MEX_TX_Fed.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/02_5877_MEX_TX_Fed.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,4776 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=LowQual,Description="Low quality">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.8-0-ge9d806836,Date="Mon Dec 25 07:02:10 CST 2017",Epoch=1514206930563,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-5877/02-5877-quality.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-5877/NC_002945v4.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false out=/scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-5877/02-5877-hapall.vcf likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[] excludeAnnotation=[] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=true numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=true keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=true captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
+##contig=<ID=NC_002945.4,length=4349904>
+##reference=file:///scratch/analysis_staging/a_script/bovis_reanalysis_af2122_2017-12-14/2001-2008/02-5877/NC_002945v4.fasta
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	02-5877
+NC_002945.4	1057	.	A	G	9550.77	.	AC=2;AF=1.00;AN=2;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.51;SOR=0.793	GT:AD:DP:GQ:PL	1/1:0,313:313:99:9579,932,0
+NC_002945.4	8741	.	T	C	6602.77	.	AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.21;SOR=0.894	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6631,612,0
+NC_002945.4	33788	.	A	G	5351.77	.	AC=2;AF=1.00;AN=2;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.24;SOR=5.203	GT:AD:DP:GQ:PL	1/1:0,128:128:99:5380,384,0
+NC_002945.4	41437	.	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.91;SOR=1.078	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3978,359,0
+NC_002945.4	67098	.	G	A	7682.77	.	AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.15;SOR=1.095	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7711,717,0
+NC_002945.4	69913	.	T	C	9898.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=3.379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.24;ReadPosRankSum=-0.587;SOR=0.502	GT:AD:DP:GQ:PL	1/1:1,306:307:99:9927,877,0
+NC_002945.4	103928	.	G	C	3252.77	.	AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.51;QD=30.63;SOR=2.334	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3281,226,0
+NC_002945.4	103931	.	G	C	3261.77	.	AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=53.21;QD=29.09;SOR=2.365	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3290,228,0
+NC_002945.4	104264	.	A	G	182.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=37.76;QD=32.93;SOR=3.611	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
+NC_002945.4	119328	.	G	T	8863.77	.	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.77;SOR=0.715	GT:AD:DP:GQ:PL	1/1:0,279:279:99:8892,834,0
+NC_002945.4	127447	.	G	C	7408.77	.	AC=2;AF=1.00;AN=2;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.64;SOR=0.980	GT:AD:DP:GQ:PL	1/1:0,227:227:99:7437,679,0
+NC_002945.4	130237	.	T	C	9361.77	.	AC=2;AF=1.00;AN=2;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.08;SOR=1.220	GT:AD:DP:GQ:PL	1/1:0,283:283:99:9390,847,0
+NC_002945.4	152355	.	G	T	5940.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=-0.430;SOR=0.238	GT:AD:DP:GQ:PL	1/1:1,217:218:99:5969,634,0
+NC_002945.4	159370	.	A	G	6878.77	.	AC=2;AF=1.00;AN=2;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.76;SOR=0.772	GT:AD:DP:GQ:PL	1/1:0,210:210:99:6907,630,0
+NC_002945.4	160535	.	T	C	8614.77	.	AC=2;AF=1.00;AN=2;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.44;SOR=0.918	GT:AD:DP:GQ:PL	1/1:0,283:283:99:8643,842,0
+NC_002945.4	165799	.	G	A	6660.77	.	AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.69;SOR=1.042	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6689,648,0
+NC_002945.4	166696	.	A	G	5785.77	.	AC=2;AF=1.00;AN=2;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.97;SOR=1.005	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5814,541,0
+NC_002945.4	180444	.	T	C	8717.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=3.957;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.96;ReadPosRankSum=2.313;SOR=0.911	GT:AD:DP:GQ:PL	1/1:1,290:291:99:8746,855,0
+NC_002945.4	232188	.	G	C	4226.77	.	AC=2;AF=1.00;AN=2;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=1.194	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4255,441,0
+NC_002945.4	246207	.	C	T	6840.77	.	AC=2;AF=1.00;AN=2;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.24;SOR=0.946	GT:AD:DP:GQ:PL	1/1:0,219:219:99:6869,655,0
+NC_002945.4	294329	.	G	A	8025.77	.	AC=2;AF=1.00;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.99;SOR=1.665	GT:AD:DP:GQ:PL	1/1:0,259:259:99:8054,772,0
+NC_002945.4	295519	.	T	C	7467.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=3.066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=31.78;ReadPosRankSum=1.967;SOR=0.278	GT:AD:DP:GQ:PL	1/1:1,234:235:99:7496,664,0
+NC_002945.4	306695	.	N	.	.	.	.	GT	./.
+NC_002945.4	306696	.	N	.	.	.	.	GT	./.
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+NC_002945.4	334320	.	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.34;QD=29.43;SOR=0.732	GT:AD:DP:GQ:PL	1/1:0,104:104:99:4641,319,0
+NC_002945.4	334323	.	T	C	3106.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQRankSum=-0.381;QD=29.31;ReadPosRankSum=2.142;SOR=0.732	GT:AD:DP:GQ:PL	1/1:2,104:106:99:3135,268,0
+NC_002945.4	339207	.	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.52;QD=33.43;SOR=3.912	GT:AD:DP:GQ:PL	1/1:0,30:30:89:1031,89,0
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+NC_002945.4	340097	.	C	G	4831.77	.	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.33;QD=30.19;SOR=0.769	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4860,325,0
+NC_002945.4	362818	.	T	C	518.77	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,13:13:39:547,39,0
+NC_002945.4	363823	.	N	.	.	.	.	GT	./.
+NC_002945.4	363824	.	N	.	.	.	.	GT	./.
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+NC_002945.4	363861	.	N	.	.	.	.	GT	./.
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+NC_002945.4	363864	.	N	.	.	.	.	GT	./.
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+NC_002945.4	363869	.	N	.	.	.	.	GT	./.
+NC_002945.4	363870	.	N	.	.	.	.	GT	./.
+NC_002945.4	363871	.	N	.	.	.	.	GT	./.
+NC_002945.4	363872	.	N	.	.	.	.	GT	./.
+NC_002945.4	363873	.	N	.	.	.	.	GT	./.
+NC_002945.4	363874	.	N	.	.	.	.	GT	./.
+NC_002945.4	363875	.	N	.	.	.	.	GT	./.
+NC_002945.4	364560	.	A	G	8443.77	.	AC=2;AF=1.00;AN=2;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.24;SOR=0.862	GT:AD:DP:GQ:PL	1/1:0,254:254:99:8472,762,0
+NC_002945.4	364804	.	T	C	9132.77	.	AC=2;AF=1.00;AN=2;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.39;SOR=0.722	GT:AD:DP:GQ:PL	1/1:0,282:282:99:9161,845,0
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+NC_002945.4	397805	.	N	.	.	.	.	GT	./.
+NC_002945.4	425180	.	C	G	8097.77	.	AC=2;AF=1.00;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.13;SOR=1.192	GT:AD:DP:GQ:PL	1/1:0,252:252:99:8126,752,0
+NC_002945.4	430077	.	C	T	5089.77	.	AC=2;AF=1.00;AN=2;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.59;SOR=0.693	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5118,510,0
+NC_002945.4	441762	.	C	T	4147.77	.	AC=2;AF=1.00;AN=2;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.50;SOR=1.066	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4176,403,0
+NC_002945.4	467343	.	C	T	7290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=3.786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=33.14;ReadPosRankSum=-0.709;SOR=0.796	GT:AD:DP:GQ:PL	1/1:1,219:220:99:7319,646,0
+NC_002945.4	470216	.	T	G	7689.77	.	AC=2;AF=1.00;AN=2;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.16;SOR=0.782	GT:AD:DP:GQ:PL	1/1:0,255:255:99:7718,762,0
+NC_002945.4	490878	.	G	A	9551.77	.	AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.838	GT:AD:DP:GQ:PL	1/1:0,309:309:99:9580,924,0
+NC_002945.4	507929	.	T	C	8764.77	.	AC=2;AF=1.00;AN=2;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.54;SOR=0.865	GT:AD:DP:GQ:PL	1/1:0,287:287:99:8793,855,0
+NC_002945.4	519412	.	T	C	3459.77	.	AC=2;AF=1.00;AN=2;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.26;SOR=0.930	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3488,302,0
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+NC_002945.4	1985765	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986719	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986721	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986724	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986896	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986897	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986898	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986899	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986901	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986902	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986903	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986904	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986905	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986906	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986907	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986908	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986909	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986910	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986911	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986912	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986913	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986914	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986915	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986916	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986917	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986918	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986919	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986920	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986921	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986922	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986923	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986924	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986926	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986927	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986928	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986929	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986930	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986931	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986932	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986933	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986934	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986935	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986936	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986937	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986938	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986939	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986940	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986941	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986942	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986943	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986944	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986945	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986946	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986947	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986948	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986949	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986950	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986951	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986952	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986953	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986954	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986955	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986956	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986957	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986958	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986959	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986960	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986961	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986962	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986963	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986964	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986965	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986966	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986967	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986968	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986969	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986970	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986971	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986972	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986973	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986974	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986975	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986976	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986978	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986979	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986980	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986981	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986982	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986983	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986984	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986985	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986986	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986987	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986988	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986989	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1986992	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986993	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986994	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986995	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986996	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986997	.	N	.	.	.	.	GT	./.
+NC_002945.4	1986998	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1987000	.	N	.	.	.	.	GT	./.
+NC_002945.4	1987001	.	N	.	.	.	.	GT	./.
+NC_002945.4	1987002	.	N	.	.	.	.	GT	./.
+NC_002945.4	1987003	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993034	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996036	.	G	A	326.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=26.83;SOR=4.615	GT:AD:DP:GQ:PL	1/1:0,9:9:27:355,27,0
+NC_002945.4	2002061	.	A	G	4635.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=27.11;ReadPosRankSum=0.701;SOR=0.382	GT:AD:DP:GQ:PL	1/1:3,168:171:99:4664,433,0
+NC_002945.4	2007303	.	C	G	7899.77	.	AC=2;AF=1.00;AN=2;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.11;SOR=1.049	GT:AD:DP:GQ:PL	1/1:0,246:246:99:7928,734,0
+NC_002945.4	2008404	.	C	T	4159.77	.	AC=2;AF=1.00;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.28;SOR=1.934	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4188,372,0
+NC_002945.4	2024890	.	T	C	7496.73	.	AC=2;AF=1.00;AN=2;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.50;SOR=0.955	GT:AD:DP:GQ:PL	1/1:0,238:238:99:7534,709,0
+NC_002945.4	2027869	.	G	A	5097.77	.	AC=2;AF=1.00;AN=2;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.86;SOR=0.744	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5126,478,0
+NC_002945.4	2034234	.	T	C	4902.77	.	AC=2;AF=1.00;AN=2;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=0.832	GT:AD:DP:GQ:PL	1/1:0,167:167:99:4931,500,0
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+NC_002945.4	2046882	.	C	T	6264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=3.573;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.27;ReadPosRankSum=1.646;SOR=0.646	GT:AD:DP:GQ:PL	1/1:1,213:214:99:6293,613,0
+NC_002945.4	2049171	.	A	G	6167.77	.	AC=2;AF=1.00;AN=2;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.42;SOR=0.981	GT:AD:DP:GQ:PL	1/1:0,163:163:99:6196,489,0
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+NC_002945.4	2056922	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2099043	.	T	C	5887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=33.26;ReadPosRankSum=-0.407;SOR=0.386	GT:AD:DP:GQ:PL	1/1:1,176:177:99:5916,488,0
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+NC_002945.4	2116802	.	C	T	6517.77	.	AC=2;AF=1.00;AN=2;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=29.49;SOR=0.702	GT:AD:DP:GQ:PL	1/1:0,221:221:99:6546,659,0
+NC_002945.4	2120728	.	C	T	5851.77	.	AC=2;AF=1.00;AN=2;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.98;SOR=0.749	GT:AD:DP:GQ:PL	1/1:0,183:183:99:5880,546,0
+NC_002945.4	2145868	.	T	C	7883.77	.	AC=2;AF=1.00;AN=2;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.80;SOR=0.861	GT:AD:DP:GQ:PL	1/1:0,256:256:99:7912,766,0
+NC_002945.4	2161367	.	C	T	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=11.585;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=1.624;QD=19.50;ReadPosRankSum=5.757;SOR=1.811	GT:AD:DP:GQ:PL	0/1:31,76:107:99:2115,0,214
+NC_002945.4	2177828	.	C	G	7112.77	.	AC=2;AF=1.00;AN=2;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.08;SOR=0.820	GT:AD:DP:GQ:PL	1/1:0,215:215:99:7141,642,0
+NC_002945.4	2193109	.	C	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-10.050;QD=0.90;ReadPosRankSum=1.812;SOR=0.696	GT:AD:DP:GQ:PL	0/1:265,48:313:99:310,0,7482
+NC_002945.4	2215255	.	G	A	3632.77	.	AC=2;AF=1.00;AN=2;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=27.94;SOR=2.780	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3661,374,0
+NC_002945.4	2219072	.	G	A	4901.77	.	AC=2;AF=1.00;AN=2;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.97;QD=32.04;SOR=0.788	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4930,457,0
+NC_002945.4	2222708	.	C	G	5927.77	.	AC=2;AF=1.00;AN=2;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.68;SOR=0.716	GT:AD:DP:GQ:PL	1/1:0,176:176:99:5956,526,0
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+NC_002945.4	2324495	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2326272	.	N	.	.	.	.	GT	./.
+NC_002945.4	2326273	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2497022	.	C	G	6939.77	.	AC=2;AF=1.00;AN=2;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.58;SOR=0.931	GT:AD:DP:GQ:PL	1/1:0,213:213:99:6968,636,0
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+NC_002945.4	3083596	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083597	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083598	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083599	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083600	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083601	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083602	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083603	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083607	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083608	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083609	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083610	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083611	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083612	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083613	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083614	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083615	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083616	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083617	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083618	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083619	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083620	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083621	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083622	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083623	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083624	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083625	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083626	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083627	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083628	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083629	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083630	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083631	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083632	.	N	.	.	.	.	GT	./.
+NC_002945.4	3098932	.	T	C	4845.77	.	AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.65;SOR=1.079	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4874,430,0
+NC_002945.4	3100639	.	G	C	4164.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=4.106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.96;ReadPosRankSum=3.022;SOR=1.025	GT:AD:DP:GQ:PL	1/1:1,138:139:99:4193,400,0
+NC_002945.4	3103354	.	T	C	4829.77	.	AC=2;AF=1.00;AN=2;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.19;SOR=1.068	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4858,477,0
+NC_002945.4	3116911	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116912	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116913	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116914	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116915	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116916	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116917	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116918	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116919	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116920	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116921	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116922	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116923	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116924	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116925	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116926	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116927	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116928	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116929	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116930	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116931	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116932	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116933	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116934	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116935	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116936	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116937	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116938	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116939	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116940	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116941	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116942	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116943	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116944	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116945	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116946	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116947	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116948	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116949	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116950	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116951	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116952	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116953	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116954	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116955	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116956	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116957	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116958	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116959	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116960	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116961	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116962	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116963	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116964	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116965	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116966	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116967	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116968	.	N	.	.	.	.	GT	./.
+NC_002945.4	3116969	.	N	.	.	.	.	GT	./.
+NC_002945.4	3137471	.	A	G	5710.77	.	AC=2;AF=1.00;AN=2;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.70;SOR=0.878	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5739,556,0
+NC_002945.4	3140342	.	G	T	8637.77	.	AC=2;AF=1.00;AN=2;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.20;SOR=0.795	GT:AD:DP:GQ:PL	1/1:0,286:286:99:8666,856,0
+NC_002945.4	3154140	.	T	C	8524.77	.	AC=2;AF=1.00;AN=2;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.17;SOR=0.887	GT:AD:DP:GQ:PL	1/1:0,257:257:99:8553,768,0
+NC_002945.4	3159182	.	G	A	5990.77	.	AC=2;AF=1.00;AN=2;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.72;SOR=0.834	GT:AD:DP:GQ:PL	1/1:0,195:195:99:6019,583,0
+NC_002945.4	3173568	.	T	C	7217.77	.	AC=2;AF=1.00;AN=2;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=33.42;SOR=0.750	GT:AD:DP:GQ:PL	1/1:0,216:216:99:7246,645,0
+NC_002945.4	3193460	.	G	T	10996.77	.	AC=2;AF=1.00;AN=2;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=25.71;SOR=0.776	GT:AD:DP:GQ:PL	1/1:0,248:248:99:11025,746,0
+NC_002945.4	3193461	.	G	T	10996.77	.	AC=2;AF=1.00;AN=2;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.40;SOR=0.776	GT:AD:DP:GQ:PL	1/1:0,248:248:99:11025,746,0
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+NC_002945.4	3219348	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3830695	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4323997	.	C	A	4754.77	.	AC=2;AF=1.00;AN=2;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=32.13;SOR=1.863	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4783,441,0
+NC_002945.4	4327440	.	G	C	5191.77	.	AC=2;AF=1.00;AN=2;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.09;SOR=0.779	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5220,496,0
+NC_002945.4	4339036	.	T	G	7016.77	.	AC=2;AF=1.00;AN=2;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.19;SOR=0.702	GT:AD:DP:GQ:PL	1/1:0,225:225:99:7045,672,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/BCG_Pasteur_Unknown_FR_SRR8886989.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/BCG_Pasteur_Unknown_FR_SRR8886989.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,93903 @@
+##fileformat=VCFv4.2
+##fileDate=20201215
+##source=freeBayes v1.3.1-dirty
+##reference=/home/galaxy/galaxy/tool-data/AF2122/sam_indexes/AF2122/AF2122.fa
+##contig=<ID=NC_002945.4,length=4349904>
+##phasing=none
+##commandline="freebayes --region NC_002945.4:0..4349904 --bam b_0.bam --fasta-reference /home/galaxy/galaxy/tool-data/AF2122/sam_indexes/AF2122/AF2122.fa --vcf ./vcf_output/part_NC_002945.4:0..4349904.vcf -u -n 0 --haplotype-length -1 --min-repeat-size 5 --min-repeat-entropy 1 -m 1 -q 0 -R 0 -Y 0 -e 1 -F 0.05 -C 2 -G 1 --min-alternate-qsum 0"
+##filter="QUAL > 20"
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
+##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
+##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
+##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
+##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
+##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
+##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
+##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
+##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
+##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
+##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
+##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
+##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
+##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
+##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
+##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
+##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
+##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
+##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
+##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
+##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
+##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
+##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
+##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
+##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
+##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
+##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
+##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
+##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
+##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
+##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
+##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
+##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
+##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
+##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
+##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BCG_Pasteur_Unknown_FR_SRR8886989
+NC_002945.4	1057	.	A	G	345.04699999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=0;RO=0;RPL=4;RPP=4.78696;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:406:-36.8831,-3.31133,0
+NC_002945.4	2469	.	N	.	.	.	.	GT	./.
+NC_002945.4	2470	.	N	.	.	.	.	GT	./.
+NC_002945.4	2471	.	N	.	.	.	.	GT	./.
+NC_002945.4	2472	.	N	.	.	.	.	GT	./.
+NC_002945.4	2473	.	N	.	.	.	.	GT	./.
+NC_002945.4	2474	.	N	.	.	.	.	GT	./.
+NC_002945.4	2475	.	N	.	.	.	.	GT	./.
+NC_002945.4	2476	.	N	.	.	.	.	GT	./.
+NC_002945.4	2477	.	N	.	.	.	.	GT	./.
+NC_002945.4	2478	.	N	.	.	.	.	GT	./.
+NC_002945.4	2479	.	N	.	.	.	.	GT	./.
+NC_002945.4	2480	.	N	.	.	.	.	GT	./.
+NC_002945.4	2481	.	N	.	.	.	.	GT	./.
+NC_002945.4	2482	.	N	.	.	.	.	GT	./.
+NC_002945.4	2483	.	N	.	.	.	.	GT	./.
+NC_002945.4	2484	.	N	.	.	.	.	GT	./.
+NC_002945.4	2485	.	N	.	.	.	.	GT	./.
+NC_002945.4	2486	.	N	.	.	.	.	GT	./.
+NC_002945.4	2487	.	N	.	.	.	.	GT	./.
+NC_002945.4	2488	.	N	.	.	.	.	GT	./.
+NC_002945.4	2489	.	N	.	.	.	.	GT	./.
+NC_002945.4	2490	.	N	.	.	.	.	GT	./.
+NC_002945.4	2491	.	N	.	.	.	.	GT	./.
+NC_002945.4	2492	.	N	.	.	.	.	GT	./.
+NC_002945.4	2493	.	N	.	.	.	.	GT	./.
+NC_002945.4	2494	.	N	.	.	.	.	GT	./.
+NC_002945.4	2495	.	N	.	.	.	.	GT	./.
+NC_002945.4	2496	.	N	.	.	.	.	GT	./.
+NC_002945.4	2497	.	N	.	.	.	.	GT	./.
+NC_002945.4	2498	.	N	.	.	.	.	GT	./.
+NC_002945.4	2499	.	N	.	.	.	.	GT	./.
+NC_002945.4	2500	.	N	.	.	.	.	GT	./.
+NC_002945.4	2501	.	N	.	.	.	.	GT	./.
+NC_002945.4	2502	.	N	.	.	.	.	GT	./.
+NC_002945.4	2503	.	N	.	.	.	.	GT	./.
+NC_002945.4	2504	.	N	.	.	.	.	GT	./.
+NC_002945.4	2505	.	N	.	.	.	.	GT	./.
+NC_002945.4	2506	.	N	.	.	.	.	GT	./.
+NC_002945.4	2507	.	N	.	.	.	.	GT	./.
+NC_002945.4	2508	.	N	.	.	.	.	GT	./.
+NC_002945.4	2509	.	N	.	.	.	.	GT	./.
+NC_002945.4	2510	.	N	.	.	.	.	GT	./.
+NC_002945.4	2511	.	N	.	.	.	.	GT	./.
+NC_002945.4	2512	.	N	.	.	.	.	GT	./.
+NC_002945.4	2513	.	N	.	.	.	.	GT	./.
+NC_002945.4	2514	.	N	.	.	.	.	GT	./.
+NC_002945.4	2515	.	N	.	.	.	.	GT	./.
+NC_002945.4	2516	.	N	.	.	.	.	GT	./.
+NC_002945.4	2517	.	N	.	.	.	.	GT	./.
+NC_002945.4	2518	.	N	.	.	.	.	GT	./.
+NC_002945.4	2519	.	N	.	.	.	.	GT	./.
+NC_002945.4	2520	.	N	.	.	.	.	GT	./.
+NC_002945.4	2521	.	N	.	.	.	.	GT	./.
+NC_002945.4	2522	.	N	.	.	.	.	GT	./.
+NC_002945.4	2523	.	N	.	.	.	.	GT	./.
+NC_002945.4	2524	.	N	.	.	.	.	GT	./.
+NC_002945.4	2525	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526	.	N	.	.	.	.	GT	./.
+NC_002945.4	2527	.	N	.	.	.	.	GT	./.
+NC_002945.4	2528	.	N	.	.	.	.	GT	./.
+NC_002945.4	2529	.	N	.	.	.	.	GT	./.
+NC_002945.4	2530	.	N	.	.	.	.	GT	./.
+NC_002945.4	2531	.	N	.	.	.	.	GT	./.
+NC_002945.4	2532	.	N	.	.	.	.	GT	./.
+NC_002945.4	2533	.	N	.	.	.	.	GT	./.
+NC_002945.4	2534	.	N	.	.	.	.	GT	./.
+NC_002945.4	2535	.	N	.	.	.	.	GT	./.
+NC_002945.4	2536	.	N	.	.	.	.	GT	./.
+NC_002945.4	2537	.	N	.	.	.	.	GT	./.
+NC_002945.4	2538	.	N	.	.	.	.	GT	./.
+NC_002945.4	2539	.	N	.	.	.	.	GT	./.
+NC_002945.4	2540	.	N	.	.	.	.	GT	./.
+NC_002945.4	2541	.	N	.	.	.	.	GT	./.
+NC_002945.4	2542	.	N	.	.	.	.	GT	./.
+NC_002945.4	2543	.	N	.	.	.	.	GT	./.
+NC_002945.4	2544	.	N	.	.	.	.	GT	./.
+NC_002945.4	2545	.	N	.	.	.	.	GT	./.
+NC_002945.4	2546	.	N	.	.	.	.	GT	./.
+NC_002945.4	2547	.	N	.	.	.	.	GT	./.
+NC_002945.4	2548	.	N	.	.	.	.	GT	./.
+NC_002945.4	2549	.	N	.	.	.	.	GT	./.
+NC_002945.4	2550	.	N	.	.	.	.	GT	./.
+NC_002945.4	2551	.	N	.	.	.	.	GT	./.
+NC_002945.4	2552	.	N	.	.	.	.	GT	./.
+NC_002945.4	2553	.	N	.	.	.	.	GT	./.
+NC_002945.4	2554	.	N	.	.	.	.	GT	./.
+NC_002945.4	2555	.	N	.	.	.	.	GT	./.
+NC_002945.4	2556	.	N	.	.	.	.	GT	./.
+NC_002945.4	2557	.	N	.	.	.	.	GT	./.
+NC_002945.4	2558	.	N	.	.	.	.	GT	./.
+NC_002945.4	2559	.	N	.	.	.	.	GT	./.
+NC_002945.4	2560	.	N	.	.	.	.	GT	./.
+NC_002945.4	2561	.	N	.	.	.	.	GT	./.
+NC_002945.4	2562	.	N	.	.	.	.	GT	./.
+NC_002945.4	2563	.	N	.	.	.	.	GT	./.
+NC_002945.4	2564	.	N	.	.	.	.	GT	./.
+NC_002945.4	2565	.	N	.	.	.	.	GT	./.
+NC_002945.4	2566	.	N	.	.	.	.	GT	./.
+NC_002945.4	2567	.	N	.	.	.	.	GT	./.
+NC_002945.4	2568	.	N	.	.	.	.	GT	./.
+NC_002945.4	2569	.	N	.	.	.	.	GT	./.
+NC_002945.4	2570	.	N	.	.	.	.	GT	./.
+NC_002945.4	2571	.	N	.	.	.	.	GT	./.
+NC_002945.4	2572	.	N	.	.	.	.	GT	./.
+NC_002945.4	2573	.	N	.	.	.	.	GT	./.
+NC_002945.4	2574	.	N	.	.	.	.	GT	./.
+NC_002945.4	2575	.	N	.	.	.	.	GT	./.
+NC_002945.4	2576	.	N	.	.	.	.	GT	./.
+NC_002945.4	2577	.	N	.	.	.	.	GT	./.
+NC_002945.4	2578	.	N	.	.	.	.	GT	./.
+NC_002945.4	4480	.	T	C	254.71	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:300:-27.3543,-2.40824,0
+NC_002945.4	8624	.	G	T	275.628	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=0;RO=0;RPL=6;RPP=3.87889;RPPR=0;RPR=4;RUN=1;SAF=9;SAP=16.9077;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:343:-31.1923,-3.0103,0
+NC_002945.4	9217	.	C	A	321.005	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:374:-34.0064,-3.0103,0
+NC_002945.4	10727	.	G	A	296.686	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=0;RO=0;RPL=4;RPP=4.78696;RPPR=0;RPR=7;RUN=1;SAF=8;SAP=7.94546;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:356:-32.348,-3.31133,0
+NC_002945.4	17856	.	C	T	92.4793	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:118:-11.0029,-0.90309,0
+NC_002945.4	17901	.	N	.	.	.	.	GT	./.
+NC_002945.4	17902	.	N	.	.	.	.	GT	./.
+NC_002945.4	17903	.	N	.	.	.	.	GT	./.
+NC_002945.4	17904	.	N	.	.	.	.	GT	./.
+NC_002945.4	17905	.	N	.	.	.	.	GT	./.
+NC_002945.4	17906	.	N	.	.	.	.	GT	./.
+NC_002945.4	17907	.	N	.	.	.	.	GT	./.
+NC_002945.4	17908	.	N	.	.	.	.	GT	./.
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+NC_002945.4	21897	.	N	.	.	.	.	GT	./.
+NC_002945.4	21898	.	N	.	.	.	.	GT	./.
+NC_002945.4	21899	.	N	.	.	.	.	GT	./.
+NC_002945.4	21900	.	N	.	.	.	.	GT	./.
+NC_002945.4	21901	.	N	.	.	.	.	GT	./.
+NC_002945.4	21902	.	N	.	.	.	.	GT	./.
+NC_002945.4	21903	.	N	.	.	.	.	GT	./.
+NC_002945.4	21904	.	N	.	.	.	.	GT	./.
+NC_002945.4	21905	.	N	.	.	.	.	GT	./.
+NC_002945.4	21906	.	N	.	.	.	.	GT	./.
+NC_002945.4	21907	.	N	.	.	.	.	GT	./.
+NC_002945.4	21908	.	N	.	.	.	.	GT	./.
+NC_002945.4	21909	.	N	.	.	.	.	GT	./.
+NC_002945.4	21910	.	N	.	.	.	.	GT	./.
+NC_002945.4	21911	.	N	.	.	.	.	GT	./.
+NC_002945.4	21912	.	N	.	.	.	.	GT	./.
+NC_002945.4	21913	.	N	.	.	.	.	GT	./.
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+NC_002945.4	21915	.	N	.	.	.	.	GT	./.
+NC_002945.4	21916	.	N	.	.	.	.	GT	./.
+NC_002945.4	21917	.	N	.	.	.	.	GT	./.
+NC_002945.4	21918	.	N	.	.	.	.	GT	./.
+NC_002945.4	21919	.	N	.	.	.	.	GT	./.
+NC_002945.4	21920	.	N	.	.	.	.	GT	./.
+NC_002945.4	21921	.	N	.	.	.	.	GT	./.
+NC_002945.4	21922	.	N	.	.	.	.	GT	./.
+NC_002945.4	21923	.	N	.	.	.	.	GT	./.
+NC_002945.4	21924	.	N	.	.	.	.	GT	./.
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+NC_002945.4	27695	.	C	T	453.77099999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:529:-47.9488,-4.21442,0
+NC_002945.4	33788	.	A	G	287.222	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=7.94546;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=0;RO=0;RPL=4;RPP=4.78696;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:344:-31.2556,-3.31133,0
+NC_002945.4	35326	.	C	T	339.775	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=0;RO=0;RPL=4;RPP=4.78696;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:397:-36.0637,-3.31133,0
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+NC_002945.4	41437	.	T	C	267.665	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:316:-28.7693,-2.70927,0
+NC_002945.4	49989	.	A	G	329.301	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=12.6832;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:394:-35.7944,-3.31133,0
+NC_002945.4	50750	.	A	G	228.305	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:271:-24.7137,-2.40824,0
+NC_002945.4	55637	.	N	.	.	.	.	GT	./.
+NC_002945.4	55638	.	N	.	.	.	.	GT	./.
+NC_002945.4	55639	.	N	.	.	.	.	GT	./.
+NC_002945.4	55640	.	N	.	.	.	.	GT	./.
+NC_002945.4	55641	.	N	.	.	.	.	GT	./.
+NC_002945.4	55642	.	N	.	.	.	.	GT	./.
+NC_002945.4	55643	.	N	.	.	.	.	GT	./.
+NC_002945.4	55644	.	N	.	.	.	.	GT	./.
+NC_002945.4	55645	.	N	.	.	.	.	GT	./.
+NC_002945.4	55646	.	N	.	.	.	.	GT	./.
+NC_002945.4	55647	.	N	.	.	.	.	GT	./.
+NC_002945.4	55648	.	N	.	.	.	.	GT	./.
+NC_002945.4	55649	.	N	.	.	.	.	GT	./.
+NC_002945.4	55650	.	N	.	.	.	.	GT	./.
+NC_002945.4	55651	.	N	.	.	.	.	GT	./.
+NC_002945.4	55652	.	N	.	.	.	.	GT	./.
+NC_002945.4	55653	.	N	.	.	.	.	GT	./.
+NC_002945.4	55654	.	N	.	.	.	.	GT	./.
+NC_002945.4	55655	.	N	.	.	.	.	GT	./.
+NC_002945.4	55656	.	N	.	.	.	.	GT	./.
+NC_002945.4	55657	.	N	.	.	.	.	GT	./.
+NC_002945.4	55658	.	N	.	.	.	.	GT	./.
+NC_002945.4	55659	.	N	.	.	.	.	GT	./.
+NC_002945.4	55660	.	N	.	.	.	.	GT	./.
+NC_002945.4	55661	.	N	.	.	.	.	GT	./.
+NC_002945.4	55662	.	N	.	.	.	.	GT	./.
+NC_002945.4	55663	.	N	.	.	.	.	GT	./.
+NC_002945.4	55664	.	N	.	.	.	.	GT	./.
+NC_002945.4	55665	.	N	.	.	.	.	GT	./.
+NC_002945.4	55666	.	N	.	.	.	.	GT	./.
+NC_002945.4	55667	.	N	.	.	.	.	GT	./.
+NC_002945.4	55668	.	N	.	.	.	.	GT	./.
+NC_002945.4	55669	.	N	.	.	.	.	GT	./.
+NC_002945.4	55670	.	N	.	.	.	.	GT	./.
+NC_002945.4	55671	.	N	.	.	.	.	GT	./.
+NC_002945.4	55672	.	N	.	.	.	.	GT	./.
+NC_002945.4	55673	.	N	.	.	.	.	GT	./.
+NC_002945.4	55674	.	N	.	.	.	.	GT	./.
+NC_002945.4	55675	.	N	.	.	.	.	GT	./.
+NC_002945.4	59861	.	A	G	330.72	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=0;RO=0;RPL=7;RPP=4.78696;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:387:-35.1582,-3.31133,0
+NC_002945.4	65756	.	A	C	289.258	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:339:-30.8317,-3.0103,0
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+NC_002945.4	69062	.	C	T	322.524	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:378:-34.3386,-3.31133,0
+NC_002945.4	69913	.	T	C	167.72099999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:201:-18.4125,-1.80618,0
+NC_002945.4	70082	.	G	A	439.559	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.63072;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:508:-46.0505,-4.21442,0
+NC_002945.4	85007	.	A	G	257.422	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:303:-27.6255,-2.40824,0
+NC_002945.4	87114	.	T	C	45.8783	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=1;RPP=3.0103;RPPR=0;RPR=1;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:61:-5.79167,-0.60206,0
+NC_002945.4	89159	.	C	T	385.76599999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=9;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:457:-41.4779,-3.61236,0
+NC_002945.4	90964	.	T	C	225.204	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:265:-24.2098,-2.10721,0
+NC_002945.4	102176	.	N	.	.	.	.	GT	./.
+NC_002945.4	102177	.	N	.	.	.	.	GT	./.
+NC_002945.4	102178	.	N	.	.	.	.	GT	./.
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+NC_002945.4	150192	.	N	.	.	.	.	GT	./.
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+NC_002945.4	150206	.	N	.	.	.	.	GT	./.
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+NC_002945.4	192177	.	A	G	253.99099999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:299:-27.2258,-2.70927,0
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+NC_002945.4	195004	.	N	.	.	.	.	GT	./.
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+NC_002945.4	195007	.	N	.	.	.	.	GT	./.
+NC_002945.4	195008	.	N	.	.	.	.	GT	./.
+NC_002945.4	195009	.	N	.	.	.	.	GT	./.
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+NC_002945.4	195012	.	N	.	.	.	.	GT	./.
+NC_002945.4	195013	.	N	.	.	.	.	GT	./.
+NC_002945.4	195014	.	N	.	.	.	.	GT	./.
+NC_002945.4	195015	.	N	.	.	.	.	GT	./.
+NC_002945.4	195016	.	N	.	.	.	.	GT	./.
+NC_002945.4	195017	.	N	.	.	.	.	GT	./.
+NC_002945.4	195018	.	N	.	.	.	.	GT	./.
+NC_002945.4	195019	.	N	.	.	.	.	GT	./.
+NC_002945.4	195020	.	N	.	.	.	.	GT	./.
+NC_002945.4	195021	.	N	.	.	.	.	GT	./.
+NC_002945.4	195022	.	N	.	.	.	.	GT	./.
+NC_002945.4	195023	.	N	.	.	.	.	GT	./.
+NC_002945.4	195024	.	N	.	.	.	.	GT	./.
+NC_002945.4	195025	.	N	.	.	.	.	GT	./.
+NC_002945.4	195026	.	N	.	.	.	.	GT	./.
+NC_002945.4	195027	.	N	.	.	.	.	GT	./.
+NC_002945.4	195028	.	N	.	.	.	.	GT	./.
+NC_002945.4	195029	.	N	.	.	.	.	GT	./.
+NC_002945.4	195030	.	N	.	.	.	.	GT	./.
+NC_002945.4	195031	.	N	.	.	.	.	GT	./.
+NC_002945.4	195032	.	N	.	.	.	.	GT	./.
+NC_002945.4	195033	.	N	.	.	.	.	GT	./.
+NC_002945.4	195034	.	N	.	.	.	.	GT	./.
+NC_002945.4	195035	.	N	.	.	.	.	GT	./.
+NC_002945.4	195036	.	N	.	.	.	.	GT	./.
+NC_002945.4	195037	.	N	.	.	.	.	GT	./.
+NC_002945.4	195038	.	N	.	.	.	.	GT	./.
+NC_002945.4	195039	.	N	.	.	.	.	GT	./.
+NC_002945.4	195040	.	N	.	.	.	.	GT	./.
+NC_002945.4	195041	.	N	.	.	.	.	GT	./.
+NC_002945.4	195042	.	N	.	.	.	.	GT	./.
+NC_002945.4	195043	.	N	.	.	.	.	GT	./.
+NC_002945.4	195044	.	N	.	.	.	.	GT	./.
+NC_002945.4	195045	.	N	.	.	.	.	GT	./.
+NC_002945.4	195046	.	N	.	.	.	.	GT	./.
+NC_002945.4	195047	.	N	.	.	.	.	GT	./.
+NC_002945.4	195048	.	N	.	.	.	.	GT	./.
+NC_002945.4	195049	.	N	.	.	.	.	GT	./.
+NC_002945.4	195050	.	N	.	.	.	.	GT	./.
+NC_002945.4	195051	.	N	.	.	.	.	GT	./.
+NC_002945.4	195052	.	N	.	.	.	.	GT	./.
+NC_002945.4	195053	.	N	.	.	.	.	GT	./.
+NC_002945.4	195054	.	N	.	.	.	.	GT	./.
+NC_002945.4	195055	.	N	.	.	.	.	GT	./.
+NC_002945.4	195056	.	N	.	.	.	.	GT	./.
+NC_002945.4	195057	.	N	.	.	.	.	GT	./.
+NC_002945.4	195058	.	N	.	.	.	.	GT	./.
+NC_002945.4	195059	.	N	.	.	.	.	GT	./.
+NC_002945.4	195060	.	N	.	.	.	.	GT	./.
+NC_002945.4	195061	.	N	.	.	.	.	GT	./.
+NC_002945.4	195062	.	N	.	.	.	.	GT	./.
+NC_002945.4	195063	.	N	.	.	.	.	GT	./.
+NC_002945.4	195064	.	N	.	.	.	.	GT	./.
+NC_002945.4	195065	.	N	.	.	.	.	GT	./.
+NC_002945.4	195066	.	N	.	.	.	.	GT	./.
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+NC_002945.4	195068	.	N	.	.	.	.	GT	./.
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+NC_002945.4	195071	.	N	.	.	.	.	GT	./.
+NC_002945.4	198965	.	N	.	.	.	.	GT	./.
+NC_002945.4	198966	.	N	.	.	.	.	GT	./.
+NC_002945.4	198967	.	N	.	.	.	.	GT	./.
+NC_002945.4	198968	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228887	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228890	.	N	.	.	.	.	GT	./.
+NC_002945.4	228891	.	N	.	.	.	.	GT	./.
+NC_002945.4	228892	.	N	.	.	.	.	GT	./.
+NC_002945.4	228893	.	N	.	.	.	.	GT	./.
+NC_002945.4	228894	.	N	.	.	.	.	GT	./.
+NC_002945.4	228895	.	N	.	.	.	.	GT	./.
+NC_002945.4	228896	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228900	.	N	.	.	.	.	GT	./.
+NC_002945.4	228901	.	N	.	.	.	.	GT	./.
+NC_002945.4	228902	.	N	.	.	.	.	GT	./.
+NC_002945.4	228903	.	N	.	.	.	.	GT	./.
+NC_002945.4	228904	.	N	.	.	.	.	GT	./.
+NC_002945.4	228905	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228910	.	N	.	.	.	.	GT	./.
+NC_002945.4	228911	.	N	.	.	.	.	GT	./.
+NC_002945.4	228912	.	N	.	.	.	.	GT	./.
+NC_002945.4	228913	.	N	.	.	.	.	GT	./.
+NC_002945.4	228914	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228920	.	N	.	.	.	.	GT	./.
+NC_002945.4	228921	.	N	.	.	.	.	GT	./.
+NC_002945.4	228922	.	N	.	.	.	.	GT	./.
+NC_002945.4	228923	.	N	.	.	.	.	GT	./.
+NC_002945.4	228924	.	N	.	.	.	.	GT	./.
+NC_002945.4	228925	.	N	.	.	.	.	GT	./.
+NC_002945.4	228926	.	N	.	.	.	.	GT	./.
+NC_002945.4	228927	.	N	.	.	.	.	GT	./.
+NC_002945.4	228928	.	N	.	.	.	.	GT	./.
+NC_002945.4	228929	.	N	.	.	.	.	GT	./.
+NC_002945.4	228930	.	N	.	.	.	.	GT	./.
+NC_002945.4	228931	.	N	.	.	.	.	GT	./.
+NC_002945.4	228932	.	N	.	.	.	.	GT	./.
+NC_002945.4	228933	.	N	.	.	.	.	GT	./.
+NC_002945.4	228934	.	N	.	.	.	.	GT	./.
+NC_002945.4	228935	.	N	.	.	.	.	GT	./.
+NC_002945.4	228936	.	N	.	.	.	.	GT	./.
+NC_002945.4	228937	.	N	.	.	.	.	GT	./.
+NC_002945.4	228938	.	N	.	.	.	.	GT	./.
+NC_002945.4	228939	.	N	.	.	.	.	GT	./.
+NC_002945.4	228940	.	N	.	.	.	.	GT	./.
+NC_002945.4	228941	.	N	.	.	.	.	GT	./.
+NC_002945.4	228942	.	N	.	.	.	.	GT	./.
+NC_002945.4	228943	.	N	.	.	.	.	GT	./.
+NC_002945.4	228944	.	N	.	.	.	.	GT	./.
+NC_002945.4	228945	.	N	.	.	.	.	GT	./.
+NC_002945.4	228946	.	N	.	.	.	.	GT	./.
+NC_002945.4	228947	.	N	.	.	.	.	GT	./.
+NC_002945.4	228948	.	N	.	.	.	.	GT	./.
+NC_002945.4	228949	.	N	.	.	.	.	GT	./.
+NC_002945.4	228950	.	N	.	.	.	.	GT	./.
+NC_002945.4	228951	.	N	.	.	.	.	GT	./.
+NC_002945.4	228952	.	N	.	.	.	.	GT	./.
+NC_002945.4	228953	.	N	.	.	.	.	GT	./.
+NC_002945.4	228954	.	N	.	.	.	.	GT	./.
+NC_002945.4	228955	.	N	.	.	.	.	GT	./.
+NC_002945.4	228956	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228958	.	N	.	.	.	.	GT	./.
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+NC_002945.4	228960	.	N	.	.	.	.	GT	./.
+NC_002945.4	228961	.	N	.	.	.	.	GT	./.
+NC_002945.4	228962	.	N	.	.	.	.	GT	./.
+NC_002945.4	228963	.	N	.	.	.	.	GT	./.
+NC_002945.4	228964	.	N	.	.	.	.	GT	./.
+NC_002945.4	228965	.	N	.	.	.	.	GT	./.
+NC_002945.4	228966	.	N	.	.	.	.	GT	./.
+NC_002945.4	228967	.	N	.	.	.	.	GT	./.
+NC_002945.4	228968	.	N	.	.	.	.	GT	./.
+NC_002945.4	228969	.	N	.	.	.	.	GT	./.
+NC_002945.4	228970	.	N	.	.	.	.	GT	./.
+NC_002945.4	228971	.	N	.	.	.	.	GT	./.
+NC_002945.4	228972	.	N	.	.	.	.	GT	./.
+NC_002945.4	228973	.	N	.	.	.	.	GT	./.
+NC_002945.4	228974	.	N	.	.	.	.	GT	./.
+NC_002945.4	228975	.	N	.	.	.	.	GT	./.
+NC_002945.4	228976	.	N	.	.	.	.	GT	./.
+NC_002945.4	228977	.	N	.	.	.	.	GT	./.
+NC_002945.4	228978	.	N	.	.	.	.	GT	./.
+NC_002945.4	228979	.	N	.	.	.	.	GT	./.
+NC_002945.4	228980	.	N	.	.	.	.	GT	./.
+NC_002945.4	228981	.	N	.	.	.	.	GT	./.
+NC_002945.4	228982	.	N	.	.	.	.	GT	./.
+NC_002945.4	228983	.	N	.	.	.	.	GT	./.
+NC_002945.4	228984	.	N	.	.	.	.	GT	./.
+NC_002945.4	228985	.	N	.	.	.	.	GT	./.
+NC_002945.4	228986	.	N	.	.	.	.	GT	./.
+NC_002945.4	228987	.	N	.	.	.	.	GT	./.
+NC_002945.4	228988	.	N	.	.	.	.	GT	./.
+NC_002945.4	228989	.	N	.	.	.	.	GT	./.
+NC_002945.4	228990	.	N	.	.	.	.	GT	./.
+NC_002945.4	232188	.	G	C	74.9317	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=0;RO=0;RPL=2;RPP=3.73412;RPPR=0;RPR=1;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:94:-8.77101,-0.90309,0
+NC_002945.4	234173	.	C	T	145.77	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:177:-16.2174,-1.80618,0
+NC_002945.4	241972	.	A	C	238.313	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:282:-25.7145,-2.40824,0
+NC_002945.4	247422	.	N	.	.	.	.	GT	./.
+NC_002945.4	247423	.	N	.	.	.	.	GT	./.
+NC_002945.4	247424	.	N	.	.	.	.	GT	./.
+NC_002945.4	247425	.	N	.	.	.	.	GT	./.
+NC_002945.4	247426	.	N	.	.	.	.	GT	./.
+NC_002945.4	247427	.	N	.	.	.	.	GT	./.
+NC_002945.4	247428	.	N	.	.	.	.	GT	./.
+NC_002945.4	247429	.	N	.	.	.	.	GT	./.
+NC_002945.4	247430	.	N	.	.	.	.	GT	./.
+NC_002945.4	247431	.	N	.	.	.	.	GT	./.
+NC_002945.4	247432	.	N	.	.	.	.	GT	./.
+NC_002945.4	247433	.	N	.	.	.	.	GT	./.
+NC_002945.4	247434	.	N	.	.	.	.	GT	./.
+NC_002945.4	253228	.	C	T	463.214	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.55317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=0;RO=0;RPL=8;RPP=3.0103;RPPR=0;RPR=8;RUN=1;SAF=7;SAP=3.55317;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:536:-48.5444,-4.81648,0
+NC_002945.4	258001	.	C	A	385.39099999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=0;RO=0;RPL=8;RPP=4.51363;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=3.17734;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:450:-40.8256,-3.91339,0
+NC_002945.4	258353	.	T	G	150.421	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:191:-17.5575,-1.50515,0
+NC_002945.4	264246	.	T	C	344.417	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=0;RO=0;RPL=8;RPP=7.94546;RPPR=0;RPR=3;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:407:-36.9751,-3.31133,0
+NC_002945.4	265183	.	A	G	230.66299999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:271:-24.7557,-2.10721,0
+NC_002945.4	265743	.	N	.	.	.	.	GT	./.
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+NC_002945.4	287276	.	T	C	298.93	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=0;RO=0;RPL=4;RPP=4.78696;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:352:-31.9792,-3.31133,0
+NC_002945.4	288778	.	T	C	121.007	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=0;RO=0;RPL=1;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:157:-14.509,-1.20412,0
+NC_002945.4	292452	.	C	T	178.96599999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.7868,-1.80618,0
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+NC_002945.4	306647	.	N	.	.	.	.	GT	./.
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+NC_002945.4	306701	.	N	.	.	.	.	GT	./.
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+NC_002945.4	306710	.	N	.	.	.	.	GT	./.
+NC_002945.4	306711	.	N	.	.	.	.	GT	./.
+NC_002945.4	306712	.	N	.	.	.	.	GT	./.
+NC_002945.4	306713	.	N	.	.	.	.	GT	./.
+NC_002945.4	306714	.	N	.	.	.	.	GT	./.
+NC_002945.4	306715	.	N	.	.	.	.	GT	./.
+NC_002945.4	306716	.	N	.	.	.	.	GT	./.
+NC_002945.4	306717	.	N	.	.	.	.	GT	./.
+NC_002945.4	306718	.	N	.	.	.	.	GT	./.
+NC_002945.4	306719	.	N	.	.	.	.	GT	./.
+NC_002945.4	306720	.	N	.	.	.	.	GT	./.
+NC_002945.4	306721	.	N	.	.	.	.	GT	./.
+NC_002945.4	306722	.	N	.	.	.	.	GT	./.
+NC_002945.4	306723	.	N	.	.	.	.	GT	./.
+NC_002945.4	306724	.	N	.	.	.	.	GT	./.
+NC_002945.4	306725	.	N	.	.	.	.	GT	./.
+NC_002945.4	306726	.	N	.	.	.	.	GT	./.
+NC_002945.4	306727	.	N	.	.	.	.	GT	./.
+NC_002945.4	306728	.	N	.	.	.	.	GT	./.
+NC_002945.4	306729	.	N	.	.	.	.	GT	./.
+NC_002945.4	306730	.	N	.	.	.	.	GT	./.
+NC_002945.4	306731	.	N	.	.	.	.	GT	./.
+NC_002945.4	306732	.	N	.	.	.	.	GT	./.
+NC_002945.4	306733	.	N	.	.	.	.	GT	./.
+NC_002945.4	306734	.	N	.	.	.	.	GT	./.
+NC_002945.4	306735	.	N	.	.	.	.	GT	./.
+NC_002945.4	306736	.	N	.	.	.	.	GT	./.
+NC_002945.4	306737	.	N	.	.	.	.	GT	./.
+NC_002945.4	311411	.	C	T	533.964	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=4.9405;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=0;RO=0;RPL=11;RPP=4.9405;RPPR=0;RPR=7;RUN=1;SAF=12;SAP=7.35324;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:623:-56.3779,-5.41854,0
+NC_002945.4	314891	.	T	C	403.51800000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=0;RO=0;RPL=10;RPP=8.59409;RPPR=0;RPR=4;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:480:-43.5167,-4.21442,0
+NC_002945.4	316393	.	C	T	303.89	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:366:-33.2861,-3.0103,0
+NC_002945.4	319709	.	N	.	.	.	.	GT	./.
+NC_002945.4	319710	.	N	.	.	.	.	GT	./.
+NC_002945.4	319711	.	N	.	.	.	.	GT	./.
+NC_002945.4	319712	.	N	.	.	.	.	GT	./.
+NC_002945.4	319713	.	N	.	.	.	.	GT	./.
+NC_002945.4	319714	.	N	.	.	.	.	GT	./.
+NC_002945.4	319715	.	N	.	.	.	.	GT	./.
+NC_002945.4	319716	.	N	.	.	.	.	GT	./.
+NC_002945.4	319717	.	N	.	.	.	.	GT	./.
+NC_002945.4	319718	.	N	.	.	.	.	GT	./.
+NC_002945.4	319719	.	N	.	.	.	.	GT	./.
+NC_002945.4	319720	.	N	.	.	.	.	GT	./.
+NC_002945.4	319721	.	N	.	.	.	.	GT	./.
+NC_002945.4	319722	.	N	.	.	.	.	GT	./.
+NC_002945.4	319723	.	N	.	.	.	.	GT	./.
+NC_002945.4	319724	.	N	.	.	.	.	GT	./.
+NC_002945.4	319725	.	N	.	.	.	.	GT	./.
+NC_002945.4	319726	.	N	.	.	.	.	GT	./.
+NC_002945.4	319727	.	N	.	.	.	.	GT	./.
+NC_002945.4	319728	.	N	.	.	.	.	GT	./.
+NC_002945.4	319729	.	N	.	.	.	.	GT	./.
+NC_002945.4	319730	.	N	.	.	.	.	GT	./.
+NC_002945.4	319731	.	N	.	.	.	.	GT	./.
+NC_002945.4	319732	.	N	.	.	.	.	GT	./.
+NC_002945.4	319733	.	N	.	.	.	.	GT	./.
+NC_002945.4	319734	.	N	.	.	.	.	GT	./.
+NC_002945.4	319735	.	N	.	.	.	.	GT	./.
+NC_002945.4	319736	.	N	.	.	.	.	GT	./.
+NC_002945.4	319737	.	N	.	.	.	.	GT	./.
+NC_002945.4	319738	.	N	.	.	.	.	GT	./.
+NC_002945.4	319739	.	N	.	.	.	.	GT	./.
+NC_002945.4	319740	.	N	.	.	.	.	GT	./.
+NC_002945.4	319741	.	N	.	.	.	.	GT	./.
+NC_002945.4	319742	.	N	.	.	.	.	GT	./.
+NC_002945.4	319743	.	N	.	.	.	.	GT	./.
+NC_002945.4	319744	.	N	.	.	.	.	GT	./.
+NC_002945.4	319745	.	N	.	.	.	.	GT	./.
+NC_002945.4	319746	.	N	.	.	.	.	GT	./.
+NC_002945.4	319747	.	N	.	.	.	.	GT	./.
+NC_002945.4	319748	.	N	.	.	.	.	GT	./.
+NC_002945.4	319749	.	N	.	.	.	.	GT	./.
+NC_002945.4	319750	.	N	.	.	.	.	GT	./.
+NC_002945.4	319751	.	N	.	.	.	.	GT	./.
+NC_002945.4	319752	.	N	.	.	.	.	GT	./.
+NC_002945.4	319753	.	N	.	.	.	.	GT	./.
+NC_002945.4	319754	.	N	.	.	.	.	GT	./.
+NC_002945.4	319755	.	N	.	.	.	.	GT	./.
+NC_002945.4	319756	.	N	.	.	.	.	GT	./.
+NC_002945.4	319757	.	N	.	.	.	.	GT	./.
+NC_002945.4	319758	.	N	.	.	.	.	GT	./.
+NC_002945.4	319759	.	N	.	.	.	.	GT	./.
+NC_002945.4	319760	.	N	.	.	.	.	GT	./.
+NC_002945.4	319761	.	N	.	.	.	.	GT	./.
+NC_002945.4	319762	.	N	.	.	.	.	GT	./.
+NC_002945.4	319763	.	N	.	.	.	.	GT	./.
+NC_002945.4	319764	.	N	.	.	.	.	GT	./.
+NC_002945.4	319765	.	N	.	.	.	.	GT	./.
+NC_002945.4	319766	.	N	.	.	.	.	GT	./.
+NC_002945.4	319767	.	N	.	.	.	.	GT	./.
+NC_002945.4	319768	.	N	.	.	.	.	GT	./.
+NC_002945.4	319769	.	N	.	.	.	.	GT	./.
+NC_002945.4	321009	.	T	C	347.69199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=9;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:415:-37.6706,-3.61236,0
+NC_002945.4	323227	.	C	G	417.401	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=0;RO=0;RPL=7;RPP=3.17734;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:484:-43.9017,-3.91339,0
+NC_002945.4	327543	.	A	G	147.055	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=0;RO=0;RPL=4;RPP=6.91895;RPPR=0;RPR=1;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:183:-16.823,-1.50515,0
+NC_002945.4	331673	.	A	G	320.47700000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=7.94546;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:379:-34.4349,-3.31133,0
+NC_002945.4	331842	.	G	C	165.639	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=1;RPP=8.80089;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:223:-20.4261,-1.80618,0
+NC_002945.4	331845	.	T	C	171.135	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=0;RO=0;RPL=1;RPP=8.80089;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:229:-20.9757,-1.80618,0
+NC_002945.4	333427	.	N	.	.	.	.	GT	./.
+NC_002945.4	333428	.	N	.	.	.	.	GT	./.
+NC_002945.4	333429	.	N	.	.	.	.	GT	./.
+NC_002945.4	333430	.	N	.	.	.	.	GT	./.
+NC_002945.4	333431	.	N	.	.	.	.	GT	./.
+NC_002945.4	333432	.	N	.	.	.	.	GT	./.
+NC_002945.4	333433	.	N	.	.	.	.	GT	./.
+NC_002945.4	333434	.	N	.	.	.	.	GT	./.
+NC_002945.4	333435	.	N	.	.	.	.	GT	./.
+NC_002945.4	333436	.	N	.	.	.	.	GT	./.
+NC_002945.4	333437	.	N	.	.	.	.	GT	./.
+NC_002945.4	333438	.	N	.	.	.	.	GT	./.
+NC_002945.4	333439	.	N	.	.	.	.	GT	./.
+NC_002945.4	333440	.	N	.	.	.	.	GT	./.
+NC_002945.4	333441	.	N	.	.	.	.	GT	./.
+NC_002945.4	333442	.	N	.	.	.	.	GT	./.
+NC_002945.4	333443	.	N	.	.	.	.	GT	./.
+NC_002945.4	333444	.	N	.	.	.	.	GT	./.
+NC_002945.4	333445	.	N	.	.	.	.	GT	./.
+NC_002945.4	333446	.	N	.	.	.	.	GT	./.
+NC_002945.4	333447	.	N	.	.	.	.	GT	./.
+NC_002945.4	333448	.	N	.	.	.	.	GT	./.
+NC_002945.4	333449	.	N	.	.	.	.	GT	./.
+NC_002945.4	333450	.	N	.	.	.	.	GT	./.
+NC_002945.4	333451	.	N	.	.	.	.	GT	./.
+NC_002945.4	333452	.	N	.	.	.	.	GT	./.
+NC_002945.4	333453	.	N	.	.	.	.	GT	./.
+NC_002945.4	333454	.	N	.	.	.	.	GT	./.
+NC_002945.4	333455	.	N	.	.	.	.	GT	./.
+NC_002945.4	333456	.	N	.	.	.	.	GT	./.
+NC_002945.4	333457	.	N	.	.	.	.	GT	./.
+NC_002945.4	333458	.	N	.	.	.	.	GT	./.
+NC_002945.4	333459	.	N	.	.	.	.	GT	./.
+NC_002945.4	333460	.	N	.	.	.	.	GT	./.
+NC_002945.4	333461	.	N	.	.	.	.	GT	./.
+NC_002945.4	333462	.	N	.	.	.	.	GT	./.
+NC_002945.4	333463	.	N	.	.	.	.	GT	./.
+NC_002945.4	333464	.	N	.	.	.	.	GT	./.
+NC_002945.4	333465	.	N	.	.	.	.	GT	./.
+NC_002945.4	333466	.	N	.	.	.	.	GT	./.
+NC_002945.4	333467	.	N	.	.	.	.	GT	./.
+NC_002945.4	333468	.	N	.	.	.	.	GT	./.
+NC_002945.4	333469	.	N	.	.	.	.	GT	./.
+NC_002945.4	333470	.	N	.	.	.	.	GT	./.
+NC_002945.4	333471	.	N	.	.	.	.	GT	./.
+NC_002945.4	333472	.	N	.	.	.	.	GT	./.
+NC_002945.4	333473	.	N	.	.	.	.	GT	./.
+NC_002945.4	333474	.	N	.	.	.	.	GT	./.
+NC_002945.4	333475	.	N	.	.	.	.	GT	./.
+NC_002945.4	333476	.	N	.	.	.	.	GT	./.
+NC_002945.4	333477	.	N	.	.	.	.	GT	./.
+NC_002945.4	333478	.	N	.	.	.	.	GT	./.
+NC_002945.4	333479	.	N	.	.	.	.	GT	./.
+NC_002945.4	333480	.	N	.	.	.	.	GT	./.
+NC_002945.4	333481	.	N	.	.	.	.	GT	./.
+NC_002945.4	333482	.	N	.	.	.	.	GT	./.
+NC_002945.4	333483	.	N	.	.	.	.	GT	./.
+NC_002945.4	333484	.	N	.	.	.	.	GT	./.
+NC_002945.4	333485	.	N	.	.	.	.	GT	./.
+NC_002945.4	333486	.	N	.	.	.	.	GT	./.
+NC_002945.4	333487	.	N	.	.	.	.	GT	./.
+NC_002945.4	333488	.	N	.	.	.	.	GT	./.
+NC_002945.4	333489	.	N	.	.	.	.	GT	./.
+NC_002945.4	333490	.	N	.	.	.	.	GT	./.
+NC_002945.4	333491	.	N	.	.	.	.	GT	./.
+NC_002945.4	333492	.	N	.	.	.	.	GT	./.
+NC_002945.4	333493	.	N	.	.	.	.	GT	./.
+NC_002945.4	333494	.	N	.	.	.	.	GT	./.
+NC_002945.4	333495	.	N	.	.	.	.	GT	./.
+NC_002945.4	333496	.	N	.	.	.	.	GT	./.
+NC_002945.4	333497	.	N	.	.	.	.	GT	./.
+NC_002945.4	333498	.	N	.	.	.	.	GT	./.
+NC_002945.4	333499	.	N	.	.	.	.	GT	./.
+NC_002945.4	333500	.	N	.	.	.	.	GT	./.
+NC_002945.4	333501	.	N	.	.	.	.	GT	./.
+NC_002945.4	333502	.	N	.	.	.	.	GT	./.
+NC_002945.4	333503	.	N	.	.	.	.	GT	./.
+NC_002945.4	333504	.	N	.	.	.	.	GT	./.
+NC_002945.4	333505	.	N	.	.	.	.	GT	./.
+NC_002945.4	333506	.	N	.	.	.	.	GT	./.
+NC_002945.4	333507	.	N	.	.	.	.	GT	./.
+NC_002945.4	333508	.	N	.	.	.	.	GT	./.
+NC_002945.4	333509	.	N	.	.	.	.	GT	./.
+NC_002945.4	333510	.	N	.	.	.	.	GT	./.
+NC_002945.4	333511	.	N	.	.	.	.	GT	./.
+NC_002945.4	333512	.	N	.	.	.	.	GT	./.
+NC_002945.4	333513	.	N	.	.	.	.	GT	./.
+NC_002945.4	333514	.	N	.	.	.	.	GT	./.
+NC_002945.4	333515	.	N	.	.	.	.	GT	./.
+NC_002945.4	333516	.	N	.	.	.	.	GT	./.
+NC_002945.4	333517	.	N	.	.	.	.	GT	./.
+NC_002945.4	333518	.	N	.	.	.	.	GT	./.
+NC_002945.4	333519	.	N	.	.	.	.	GT	./.
+NC_002945.4	333520	.	N	.	.	.	.	GT	./.
+NC_002945.4	333521	.	N	.	.	.	.	GT	./.
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+NC_002945.4	339664	.	N	.	.	.	.	GT	./.
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+NC_002945.4	340090	.	C	T	115.906	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:143:-13.2207,-1.20412,0
+NC_002945.4	340091	.	G	A	116.8	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:144:-13.3101,-1.20412,0
+NC_002945.4	340092	.	G	C	119.57	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:147:-13.5871,-1.20412,0
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+NC_002945.4	373148	.	N	.	.	.	.	GT	./.
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+NC_002945.4	409487	.	N	.	.	.	.	GT	./.
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+NC_002945.4	411062	.	N	.	.	.	.	GT	./.
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+NC_002945.4	411064	.	N	.	.	.	.	GT	./.
+NC_002945.4	411065	.	N	.	.	.	.	GT	./.
+NC_002945.4	411066	.	N	.	.	.	.	GT	./.
+NC_002945.4	411067	.	N	.	.	.	.	GT	./.
+NC_002945.4	411068	.	N	.	.	.	.	GT	./.
+NC_002945.4	411069	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425071	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425075	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425083	.	N	.	.	.	.	GT	./.
+NC_002945.4	425084	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425091	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425101	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425123	.	N	.	.	.	.	GT	./.
+NC_002945.4	425124	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425126	.	N	.	.	.	.	GT	./.
+NC_002945.4	425127	.	N	.	.	.	.	GT	./.
+NC_002945.4	425128	.	N	.	.	.	.	GT	./.
+NC_002945.4	425129	.	N	.	.	.	.	GT	./.
+NC_002945.4	425130	.	N	.	.	.	.	GT	./.
+NC_002945.4	425131	.	N	.	.	.	.	GT	./.
+NC_002945.4	425132	.	N	.	.	.	.	GT	./.
+NC_002945.4	425133	.	N	.	.	.	.	GT	./.
+NC_002945.4	425134	.	N	.	.	.	.	GT	./.
+NC_002945.4	425135	.	N	.	.	.	.	GT	./.
+NC_002945.4	425136	.	N	.	.	.	.	GT	./.
+NC_002945.4	425137	.	N	.	.	.	.	GT	./.
+NC_002945.4	425138	.	N	.	.	.	.	GT	./.
+NC_002945.4	425139	.	N	.	.	.	.	GT	./.
+NC_002945.4	425140	.	N	.	.	.	.	GT	./.
+NC_002945.4	425141	.	N	.	.	.	.	GT	./.
+NC_002945.4	425142	.	N	.	.	.	.	GT	./.
+NC_002945.4	430077	.	C	T	156.77100000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=0;RO=0;RPL=2;RPP=3.44459;RPPR=0;RPR=3;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:187:-17.1925,-1.50515,0
+NC_002945.4	432512	.	N	.	.	.	.	GT	./.
+NC_002945.4	432513	.	N	.	.	.	.	GT	./.
+NC_002945.4	432514	.	N	.	.	.	.	GT	./.
+NC_002945.4	432515	.	N	.	.	.	.	GT	./.
+NC_002945.4	432516	.	N	.	.	.	.	GT	./.
+NC_002945.4	432517	.	N	.	.	.	.	GT	./.
+NC_002945.4	432518	.	N	.	.	.	.	GT	./.
+NC_002945.4	432519	.	N	.	.	.	.	GT	./.
+NC_002945.4	432520	.	N	.	.	.	.	GT	./.
+NC_002945.4	432521	.	N	.	.	.	.	GT	./.
+NC_002945.4	432522	.	N	.	.	.	.	GT	./.
+NC_002945.4	432523	.	N	.	.	.	.	GT	./.
+NC_002945.4	432524	.	N	.	.	.	.	GT	./.
+NC_002945.4	432525	.	N	.	.	.	.	GT	./.
+NC_002945.4	432526	.	N	.	.	.	.	GT	./.
+NC_002945.4	432527	.	N	.	.	.	.	GT	./.
+NC_002945.4	432528	.	N	.	.	.	.	GT	./.
+NC_002945.4	432529	.	N	.	.	.	.	GT	./.
+NC_002945.4	432530	.	N	.	.	.	.	GT	./.
+NC_002945.4	432531	.	N	.	.	.	.	GT	./.
+NC_002945.4	432532	.	N	.	.	.	.	GT	./.
+NC_002945.4	432533	.	N	.	.	.	.	GT	./.
+NC_002945.4	432534	.	N	.	.	.	.	GT	./.
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+NC_002945.4	432536	.	N	.	.	.	.	GT	./.
+NC_002945.4	432537	.	N	.	.	.	.	GT	./.
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+NC_002945.4	432540	.	N	.	.	.	.	GT	./.
+NC_002945.4	432541	.	N	.	.	.	.	GT	./.
+NC_002945.4	432542	.	N	.	.	.	.	GT	./.
+NC_002945.4	432543	.	N	.	.	.	.	GT	./.
+NC_002945.4	432544	.	N	.	.	.	.	GT	./.
+NC_002945.4	432545	.	N	.	.	.	.	GT	./.
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+NC_002945.4	432547	.	N	.	.	.	.	GT	./.
+NC_002945.4	432548	.	N	.	.	.	.	GT	./.
+NC_002945.4	432549	.	N	.	.	.	.	GT	./.
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+NC_002945.4	432551	.	N	.	.	.	.	GT	./.
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+NC_002945.4	432559	.	N	.	.	.	.	GT	./.
+NC_002945.4	432805	.	N	.	.	.	.	GT	./.
+NC_002945.4	432806	.	N	.	.	.	.	GT	./.
+NC_002945.4	432807	.	N	.	.	.	.	GT	./.
+NC_002945.4	432808	.	N	.	.	.	.	GT	./.
+NC_002945.4	432809	.	N	.	.	.	.	GT	./.
+NC_002945.4	432810	.	N	.	.	.	.	GT	./.
+NC_002945.4	432811	.	N	.	.	.	.	GT	./.
+NC_002945.4	432812	.	N	.	.	.	.	GT	./.
+NC_002945.4	432813	.	N	.	.	.	.	GT	./.
+NC_002945.4	432814	.	N	.	.	.	.	GT	./.
+NC_002945.4	432815	.	N	.	.	.	.	GT	./.
+NC_002945.4	432816	.	N	.	.	.	.	GT	./.
+NC_002945.4	432817	.	N	.	.	.	.	GT	./.
+NC_002945.4	432818	.	N	.	.	.	.	GT	./.
+NC_002945.4	432819	.	N	.	.	.	.	GT	./.
+NC_002945.4	432820	.	N	.	.	.	.	GT	./.
+NC_002945.4	432821	.	N	.	.	.	.	GT	./.
+NC_002945.4	432822	.	N	.	.	.	.	GT	./.
+NC_002945.4	432823	.	N	.	.	.	.	GT	./.
+NC_002945.4	432824	.	N	.	.	.	.	GT	./.
+NC_002945.4	432825	.	N	.	.	.	.	GT	./.
+NC_002945.4	438482	.	C	G	196.52	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:236:-21.5633,-2.10721,0
+NC_002945.4	441765	.	N	.	.	.	.	GT	./.
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+NC_002945.4	441771	.	N	.	.	.	.	GT	./.
+NC_002945.4	441772	.	N	.	.	.	.	GT	./.
+NC_002945.4	441773	.	N	.	.	.	.	GT	./.
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+NC_002945.4	441775	.	N	.	.	.	.	GT	./.
+NC_002945.4	441776	.	N	.	.	.	.	GT	./.
+NC_002945.4	441777	.	N	.	.	.	.	GT	./.
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+NC_002945.4	441780	.	N	.	.	.	.	GT	./.
+NC_002945.4	441781	.	N	.	.	.	.	GT	./.
+NC_002945.4	441782	.	N	.	.	.	.	GT	./.
+NC_002945.4	441783	.	N	.	.	.	.	GT	./.
+NC_002945.4	441784	.	N	.	.	.	.	GT	./.
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+NC_002945.4	441786	.	N	.	.	.	.	GT	./.
+NC_002945.4	441787	.	N	.	.	.	.	GT	./.
+NC_002945.4	441788	.	N	.	.	.	.	GT	./.
+NC_002945.4	441789	.	N	.	.	.	.	GT	./.
+NC_002945.4	441790	.	N	.	.	.	.	GT	./.
+NC_002945.4	446432	.	T	C	386.514	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=0;RO=0;RPL=8;RPP=3.63072;RPPR=0;RPR=6;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:456:-41.3391,-4.21442,0
+NC_002945.4	449922	.	T	C	259.258	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:305:-27.8091,-2.40824,0
+NC_002945.4	467343	.	C	T	188.11599999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=0;RO=0;RPL=2;RPP=4.45795;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:226:-20.7019,-1.80618,0
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+NC_002945.4	467940	.	C	T	250.548	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:322:-29.2829,-3.0103,0
+NC_002945.4	474831	.	N	.	.	.	.	GT	./.
+NC_002945.4	474832	.	N	.	.	.	.	GT	./.
+NC_002945.4	474833	.	N	.	.	.	.	GT	./.
+NC_002945.4	474834	.	N	.	.	.	.	GT	./.
+NC_002945.4	474835	.	N	.	.	.	.	GT	./.
+NC_002945.4	474836	.	N	.	.	.	.	GT	./.
+NC_002945.4	474837	.	N	.	.	.	.	GT	./.
+NC_002945.4	474838	.	N	.	.	.	.	GT	./.
+NC_002945.4	474839	.	N	.	.	.	.	GT	./.
+NC_002945.4	474840	.	N	.	.	.	.	GT	./.
+NC_002945.4	474841	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499185	.	N	.	.	.	.	GT	./.
+NC_002945.4	499186	.	N	.	.	.	.	GT	./.
+NC_002945.4	499187	.	N	.	.	.	.	GT	./.
+NC_002945.4	499188	.	N	.	.	.	.	GT	./.
+NC_002945.4	499189	.	N	.	.	.	.	GT	./.
+NC_002945.4	499190	.	N	.	.	.	.	GT	./.
+NC_002945.4	499191	.	N	.	.	.	.	GT	./.
+NC_002945.4	499192	.	N	.	.	.	.	GT	./.
+NC_002945.4	499193	.	N	.	.	.	.	GT	./.
+NC_002945.4	499194	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499198	.	N	.	.	.	.	GT	./.
+NC_002945.4	499199	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499201	.	N	.	.	.	.	GT	./.
+NC_002945.4	499202	.	N	.	.	.	.	GT	./.
+NC_002945.4	499203	.	N	.	.	.	.	GT	./.
+NC_002945.4	499204	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499209	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499211	.	N	.	.	.	.	GT	./.
+NC_002945.4	499212	.	N	.	.	.	.	GT	./.
+NC_002945.4	499213	.	N	.	.	.	.	GT	./.
+NC_002945.4	499214	.	N	.	.	.	.	GT	./.
+NC_002945.4	499215	.	N	.	.	.	.	GT	./.
+NC_002945.4	499216	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499233	.	N	.	.	.	.	GT	./.
+NC_002945.4	499234	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499237	.	N	.	.	.	.	GT	./.
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+NC_002945.4	499241	.	N	.	.	.	.	GT	./.
+NC_002945.4	499242	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581809	.	N	.	.	.	.	GT	./.
+NC_002945.4	581810	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581812	.	N	.	.	.	.	GT	./.
+NC_002945.4	581813	.	N	.	.	.	.	GT	./.
+NC_002945.4	581814	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581820	.	N	.	.	.	.	GT	./.
+NC_002945.4	581821	.	N	.	.	.	.	GT	./.
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+NC_002945.4	676586	.	N	.	.	.	.	GT	./.
+NC_002945.4	676587	.	N	.	.	.	.	GT	./.
+NC_002945.4	676588	.	N	.	.	.	.	GT	./.
+NC_002945.4	676589	.	N	.	.	.	.	GT	./.
+NC_002945.4	676590	.	N	.	.	.	.	GT	./.
+NC_002945.4	676591	.	N	.	.	.	.	GT	./.
+NC_002945.4	676592	.	N	.	.	.	.	GT	./.
+NC_002945.4	676593	.	N	.	.	.	.	GT	./.
+NC_002945.4	676594	.	N	.	.	.	.	GT	./.
+NC_002945.4	676595	.	N	.	.	.	.	GT	./.
+NC_002945.4	676596	.	N	.	.	.	.	GT	./.
+NC_002945.4	676597	.	N	.	.	.	.	GT	./.
+NC_002945.4	676598	.	N	.	.	.	.	GT	./.
+NC_002945.4	676599	.	N	.	.	.	.	GT	./.
+NC_002945.4	676600	.	N	.	.	.	.	GT	./.
+NC_002945.4	676601	.	N	.	.	.	.	GT	./.
+NC_002945.4	676602	.	N	.	.	.	.	GT	./.
+NC_002945.4	676603	.	N	.	.	.	.	GT	./.
+NC_002945.4	676604	.	N	.	.	.	.	GT	./.
+NC_002945.4	676605	.	N	.	.	.	.	GT	./.
+NC_002945.4	676606	.	N	.	.	.	.	GT	./.
+NC_002945.4	676607	.	N	.	.	.	.	GT	./.
+NC_002945.4	676608	.	N	.	.	.	.	GT	./.
+NC_002945.4	676609	.	N	.	.	.	.	GT	./.
+NC_002945.4	676610	.	N	.	.	.	.	GT	./.
+NC_002945.4	676611	.	N	.	.	.	.	GT	./.
+NC_002945.4	676612	.	N	.	.	.	.	GT	./.
+NC_002945.4	676613	.	N	.	.	.	.	GT	./.
+NC_002945.4	676614	.	N	.	.	.	.	GT	./.
+NC_002945.4	676615	.	N	.	.	.	.	GT	./.
+NC_002945.4	676616	.	N	.	.	.	.	GT	./.
+NC_002945.4	676617	.	N	.	.	.	.	GT	./.
+NC_002945.4	676618	.	N	.	.	.	.	GT	./.
+NC_002945.4	676619	.	N	.	.	.	.	GT	./.
+NC_002945.4	676620	.	N	.	.	.	.	GT	./.
+NC_002945.4	676621	.	N	.	.	.	.	GT	./.
+NC_002945.4	676622	.	N	.	.	.	.	GT	./.
+NC_002945.4	676623	.	N	.	.	.	.	GT	./.
+NC_002945.4	676624	.	N	.	.	.	.	GT	./.
+NC_002945.4	676625	.	N	.	.	.	.	GT	./.
+NC_002945.4	676626	.	N	.	.	.	.	GT	./.
+NC_002945.4	676627	.	N	.	.	.	.	GT	./.
+NC_002945.4	676628	.	N	.	.	.	.	GT	./.
+NC_002945.4	676629	.	N	.	.	.	.	GT	./.
+NC_002945.4	676630	.	N	.	.	.	.	GT	./.
+NC_002945.4	676631	.	N	.	.	.	.	GT	./.
+NC_002945.4	676632	.	N	.	.	.	.	GT	./.
+NC_002945.4	676633	.	N	.	.	.	.	GT	./.
+NC_002945.4	676634	.	N	.	.	.	.	GT	./.
+NC_002945.4	676635	.	N	.	.	.	.	GT	./.
+NC_002945.4	676636	.	N	.	.	.	.	GT	./.
+NC_002945.4	676637	.	N	.	.	.	.	GT	./.
+NC_002945.4	676638	.	N	.	.	.	.	GT	./.
+NC_002945.4	676639	.	N	.	.	.	.	GT	./.
+NC_002945.4	676640	.	N	.	.	.	.	GT	./.
+NC_002945.4	676641	.	N	.	.	.	.	GT	./.
+NC_002945.4	676642	.	N	.	.	.	.	GT	./.
+NC_002945.4	676643	.	N	.	.	.	.	GT	./.
+NC_002945.4	676644	.	N	.	.	.	.	GT	./.
+NC_002945.4	676645	.	N	.	.	.	.	GT	./.
+NC_002945.4	676646	.	N	.	.	.	.	GT	./.
+NC_002945.4	676647	.	N	.	.	.	.	GT	./.
+NC_002945.4	676648	.	N	.	.	.	.	GT	./.
+NC_002945.4	676649	.	N	.	.	.	.	GT	./.
+NC_002945.4	676650	.	N	.	.	.	.	GT	./.
+NC_002945.4	676651	.	N	.	.	.	.	GT	./.
+NC_002945.4	676652	.	N	.	.	.	.	GT	./.
+NC_002945.4	676653	.	N	.	.	.	.	GT	./.
+NC_002945.4	676654	.	N	.	.	.	.	GT	./.
+NC_002945.4	676655	.	N	.	.	.	.	GT	./.
+NC_002945.4	676656	.	N	.	.	.	.	GT	./.
+NC_002945.4	676657	.	N	.	.	.	.	GT	./.
+NC_002945.4	676658	.	N	.	.	.	.	GT	./.
+NC_002945.4	676659	.	N	.	.	.	.	GT	./.
+NC_002945.4	676660	.	N	.	.	.	.	GT	./.
+NC_002945.4	676661	.	N	.	.	.	.	GT	./.
+NC_002945.4	676662	.	N	.	.	.	.	GT	./.
+NC_002945.4	676663	.	N	.	.	.	.	GT	./.
+NC_002945.4	676664	.	N	.	.	.	.	GT	./.
+NC_002945.4	676665	.	N	.	.	.	.	GT	./.
+NC_002945.4	676666	.	N	.	.	.	.	GT	./.
+NC_002945.4	676667	.	N	.	.	.	.	GT	./.
+NC_002945.4	676668	.	N	.	.	.	.	GT	./.
+NC_002945.4	676669	.	N	.	.	.	.	GT	./.
+NC_002945.4	676670	.	N	.	.	.	.	GT	./.
+NC_002945.4	676671	.	N	.	.	.	.	GT	./.
+NC_002945.4	676672	.	N	.	.	.	.	GT	./.
+NC_002945.4	676673	.	N	.	.	.	.	GT	./.
+NC_002945.4	676674	.	N	.	.	.	.	GT	./.
+NC_002945.4	676675	.	N	.	.	.	.	GT	./.
+NC_002945.4	676676	.	N	.	.	.	.	GT	./.
+NC_002945.4	676677	.	N	.	.	.	.	GT	./.
+NC_002945.4	676678	.	N	.	.	.	.	GT	./.
+NC_002945.4	676679	.	N	.	.	.	.	GT	./.
+NC_002945.4	680416	.	C	T	241.33599999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=0;RO=0;RPL=5;RPP=3.25157;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:289:-26.3125,-2.70927,0
+NC_002945.4	683955	.	G	T	153.74200000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:187:-17.1907,-1.50515,0
+NC_002945.4	684207	.	T	C	393.721	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=0;RO=0;RPL=8;RPP=3.63072;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:460:-41.7008,-4.21442,0
+NC_002945.4	684932	.	N	.	.	.	.	GT	./.
+NC_002945.4	684933	.	N	.	.	.	.	GT	./.
+NC_002945.4	684934	.	N	.	.	.	.	GT	./.
+NC_002945.4	684935	.	N	.	.	.	.	GT	./.
+NC_002945.4	684936	.	N	.	.	.	.	GT	./.
+NC_002945.4	685069	.	T	C	141.645	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=0;RO=0;RPL=1;RPP=6.91895;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:188:-17.282,-1.50515,0
+NC_002945.4	693833	.	T	C	150.748	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=0;RO=0;RPL=2;RPP=3.44459;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:187:-17.1923,-1.50515,0
+NC_002945.4	699100	.	T	C	238.639	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=12.7819;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=2;SAP=7.35324;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:296:-26.9902,-2.40824,0
+NC_002945.4	699677	.	N	.	.	.	.	GT	./.
+NC_002945.4	699678	.	N	.	.	.	.	GT	./.
+NC_002945.4	699679	.	N	.	.	.	.	GT	./.
+NC_002945.4	699680	.	N	.	.	.	.	GT	./.
+NC_002945.4	699681	.	N	.	.	.	.	GT	./.
+NC_002945.4	699682	.	N	.	.	.	.	GT	./.
+NC_002945.4	699683	.	N	.	.	.	.	GT	./.
+NC_002945.4	699684	.	N	.	.	.	.	GT	./.
+NC_002945.4	699685	.	N	.	.	.	.	GT	./.
+NC_002945.4	699686	.	N	.	.	.	.	GT	./.
+NC_002945.4	699687	.	N	.	.	.	.	GT	./.
+NC_002945.4	699688	.	N	.	.	.	.	GT	./.
+NC_002945.4	699689	.	N	.	.	.	.	GT	./.
+NC_002945.4	699690	.	N	.	.	.	.	GT	./.
+NC_002945.4	699691	.	N	.	.	.	.	GT	./.
+NC_002945.4	699692	.	N	.	.	.	.	GT	./.
+NC_002945.4	699693	.	N	.	.	.	.	GT	./.
+NC_002945.4	699694	.	N	.	.	.	.	GT	./.
+NC_002945.4	701329	.	G	C	388.621	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:454:-41.2071,-3.61236,0
+NC_002945.4	701386	.	A	G	295.47	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:355:-32.2802,-3.0103,0
+NC_002945.4	702188	.	C	T	224.28599999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:264:-24.118,-2.10721,0
+NC_002945.4	712319	.	T	C	362.452	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:422:-38.3314,-3.31133,0
+NC_002945.4	713327	.	G	C	162.624	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:211:-19.3287,-1.80618,0
+NC_002945.4	723170	.	G	A	177.407	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=5;RPP=8.80089;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=8.80089;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:223:-20.4268,-1.80618,0
+NC_002945.4	724718	.	C	T	361.569	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.17734;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:421:-38.1935,-3.91339,0
+NC_002945.4	726406	.	N	.	.	.	.	GT	./.
+NC_002945.4	726407	.	N	.	.	.	.	GT	./.
+NC_002945.4	726408	.	N	.	.	.	.	GT	./.
+NC_002945.4	726409	.	N	.	.	.	.	GT	./.
+NC_002945.4	726410	.	N	.	.	.	.	GT	./.
+NC_002945.4	726411	.	N	.	.	.	.	GT	./.
+NC_002945.4	726412	.	N	.	.	.	.	GT	./.
+NC_002945.4	726413	.	N	.	.	.	.	GT	./.
+NC_002945.4	726414	.	N	.	.	.	.	GT	./.
+NC_002945.4	726415	.	N	.	.	.	.	GT	./.
+NC_002945.4	726416	.	N	.	.	.	.	GT	./.
+NC_002945.4	726417	.	N	.	.	.	.	GT	./.
+NC_002945.4	726418	.	N	.	.	.	.	GT	./.
+NC_002945.4	726419	.	N	.	.	.	.	GT	./.
+NC_002945.4	726420	.	N	.	.	.	.	GT	./.
+NC_002945.4	726421	.	N	.	.	.	.	GT	./.
+NC_002945.4	726422	.	N	.	.	.	.	GT	./.
+NC_002945.4	726423	.	N	.	.	.	.	GT	./.
+NC_002945.4	726424	.	N	.	.	.	.	GT	./.
+NC_002945.4	726425	.	N	.	.	.	.	GT	./.
+NC_002945.4	726426	.	N	.	.	.	.	GT	./.
+NC_002945.4	726427	.	N	.	.	.	.	GT	./.
+NC_002945.4	726428	.	N	.	.	.	.	GT	./.
+NC_002945.4	726429	.	N	.	.	.	.	GT	./.
+NC_002945.4	726430	.	N	.	.	.	.	GT	./.
+NC_002945.4	726431	.	N	.	.	.	.	GT	./.
+NC_002945.4	726432	.	N	.	.	.	.	GT	./.
+NC_002945.4	726433	.	N	.	.	.	.	GT	./.
+NC_002945.4	726434	.	N	.	.	.	.	GT	./.
+NC_002945.4	726435	.	N	.	.	.	.	GT	./.
+NC_002945.4	726436	.	N	.	.	.	.	GT	./.
+NC_002945.4	726437	.	N	.	.	.	.	GT	./.
+NC_002945.4	726438	.	N	.	.	.	.	GT	./.
+NC_002945.4	726439	.	N	.	.	.	.	GT	./.
+NC_002945.4	726440	.	N	.	.	.	.	GT	./.
+NC_002945.4	726441	.	N	.	.	.	.	GT	./.
+NC_002945.4	726442	.	N	.	.	.	.	GT	./.
+NC_002945.4	726443	.	N	.	.	.	.	GT	./.
+NC_002945.4	726444	.	N	.	.	.	.	GT	./.
+NC_002945.4	726445	.	N	.	.	.	.	GT	./.
+NC_002945.4	726446	.	N	.	.	.	.	GT	./.
+NC_002945.4	726447	.	N	.	.	.	.	GT	./.
+NC_002945.4	726448	.	N	.	.	.	.	GT	./.
+NC_002945.4	726449	.	N	.	.	.	.	GT	./.
+NC_002945.4	726450	.	N	.	.	.	.	GT	./.
+NC_002945.4	726451	.	N	.	.	.	.	GT	./.
+NC_002945.4	726452	.	N	.	.	.	.	GT	./.
+NC_002945.4	726453	.	N	.	.	.	.	GT	./.
+NC_002945.4	726454	.	N	.	.	.	.	GT	./.
+NC_002945.4	726455	.	N	.	.	.	.	GT	./.
+NC_002945.4	726456	.	N	.	.	.	.	GT	./.
+NC_002945.4	726457	.	N	.	.	.	.	GT	./.
+NC_002945.4	726458	.	N	.	.	.	.	GT	./.
+NC_002945.4	726459	.	N	.	.	.	.	GT	./.
+NC_002945.4	726460	.	N	.	.	.	.	GT	./.
+NC_002945.4	726461	.	N	.	.	.	.	GT	./.
+NC_002945.4	726462	.	N	.	.	.	.	GT	./.
+NC_002945.4	726463	.	N	.	.	.	.	GT	./.
+NC_002945.4	726464	.	N	.	.	.	.	GT	./.
+NC_002945.4	726465	.	N	.	.	.	.	GT	./.
+NC_002945.4	726979	.	A	G	218.435	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:260:-23.7548,-2.10721,0
+NC_002945.4	729974	.	C	T	95.5697	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:121:-11.187,-1.20412,0
+NC_002945.4	739093	.	C	T	222.293	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=0;RO=0;RPL=6;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:268:-24.4082,-2.70927,0
+NC_002945.4	741185	.	N	.	.	.	.	GT	./.
+NC_002945.4	741186	.	N	.	.	.	.	GT	./.
+NC_002945.4	741187	.	N	.	.	.	.	GT	./.
+NC_002945.4	741188	.	N	.	.	.	.	GT	./.
+NC_002945.4	741189	.	N	.	.	.	.	GT	./.
+NC_002945.4	741190	.	N	.	.	.	.	GT	./.
+NC_002945.4	741191	.	N	.	.	.	.	GT	./.
+NC_002945.4	741192	.	N	.	.	.	.	GT	./.
+NC_002945.4	741193	.	N	.	.	.	.	GT	./.
+NC_002945.4	741194	.	N	.	.	.	.	GT	./.
+NC_002945.4	741195	.	N	.	.	.	.	GT	./.
+NC_002945.4	741196	.	N	.	.	.	.	GT	./.
+NC_002945.4	741197	.	N	.	.	.	.	GT	./.
+NC_002945.4	741198	.	N	.	.	.	.	GT	./.
+NC_002945.4	741199	.	N	.	.	.	.	GT	./.
+NC_002945.4	741200	.	N	.	.	.	.	GT	./.
+NC_002945.4	741201	.	N	.	.	.	.	GT	./.
+NC_002945.4	741202	.	N	.	.	.	.	GT	./.
+NC_002945.4	741203	.	N	.	.	.	.	GT	./.
+NC_002945.4	741204	.	N	.	.	.	.	GT	./.
+NC_002945.4	741205	.	N	.	.	.	.	GT	./.
+NC_002945.4	741206	.	N	.	.	.	.	GT	./.
+NC_002945.4	741207	.	N	.	.	.	.	GT	./.
+NC_002945.4	741208	.	N	.	.	.	.	GT	./.
+NC_002945.4	741209	.	N	.	.	.	.	GT	./.
+NC_002945.4	741210	.	N	.	.	.	.	GT	./.
+NC_002945.4	741211	.	N	.	.	.	.	GT	./.
+NC_002945.4	741212	.	N	.	.	.	.	GT	./.
+NC_002945.4	741213	.	N	.	.	.	.	GT	./.
+NC_002945.4	741214	.	N	.	.	.	.	GT	./.
+NC_002945.4	741215	.	N	.	.	.	.	GT	./.
+NC_002945.4	741216	.	N	.	.	.	.	GT	./.
+NC_002945.4	741217	.	N	.	.	.	.	GT	./.
+NC_002945.4	741218	.	N	.	.	.	.	GT	./.
+NC_002945.4	741219	.	N	.	.	.	.	GT	./.
+NC_002945.4	755186	.	N	.	.	.	.	GT	./.
+NC_002945.4	755187	.	N	.	.	.	.	GT	./.
+NC_002945.4	755188	.	N	.	.	.	.	GT	./.
+NC_002945.4	755189	.	N	.	.	.	.	GT	./.
+NC_002945.4	755190	.	N	.	.	.	.	GT	./.
+NC_002945.4	755191	.	N	.	.	.	.	GT	./.
+NC_002945.4	755192	.	N	.	.	.	.	GT	./.
+NC_002945.4	755193	.	N	.	.	.	.	GT	./.
+NC_002945.4	755194	.	N	.	.	.	.	GT	./.
+NC_002945.4	755195	.	N	.	.	.	.	GT	./.
+NC_002945.4	755196	.	N	.	.	.	.	GT	./.
+NC_002945.4	755197	.	N	.	.	.	.	GT	./.
+NC_002945.4	755198	.	N	.	.	.	.	GT	./.
+NC_002945.4	755199	.	N	.	.	.	.	GT	./.
+NC_002945.4	755200	.	N	.	.	.	.	GT	./.
+NC_002945.4	755201	.	N	.	.	.	.	GT	./.
+NC_002945.4	755202	.	N	.	.	.	.	GT	./.
+NC_002945.4	755203	.	N	.	.	.	.	GT	./.
+NC_002945.4	755204	.	N	.	.	.	.	GT	./.
+NC_002945.4	755205	.	N	.	.	.	.	GT	./.
+NC_002945.4	755206	.	N	.	.	.	.	GT	./.
+NC_002945.4	755207	.	N	.	.	.	.	GT	./.
+NC_002945.4	755208	.	N	.	.	.	.	GT	./.
+NC_002945.4	755209	.	N	.	.	.	.	GT	./.
+NC_002945.4	755210	.	N	.	.	.	.	GT	./.
+NC_002945.4	755211	.	N	.	.	.	.	GT	./.
+NC_002945.4	755212	.	N	.	.	.	.	GT	./.
+NC_002945.4	755213	.	N	.	.	.	.	GT	./.
+NC_002945.4	755214	.	N	.	.	.	.	GT	./.
+NC_002945.4	755215	.	N	.	.	.	.	GT	./.
+NC_002945.4	755216	.	N	.	.	.	.	GT	./.
+NC_002945.4	755217	.	N	.	.	.	.	GT	./.
+NC_002945.4	755218	.	N	.	.	.	.	GT	./.
+NC_002945.4	755219	.	N	.	.	.	.	GT	./.
+NC_002945.4	755220	.	N	.	.	.	.	GT	./.
+NC_002945.4	755221	.	N	.	.	.	.	GT	./.
+NC_002945.4	755222	.	N	.	.	.	.	GT	./.
+NC_002945.4	755223	.	N	.	.	.	.	GT	./.
+NC_002945.4	755224	.	N	.	.	.	.	GT	./.
+NC_002945.4	755225	.	N	.	.	.	.	GT	./.
+NC_002945.4	755226	.	N	.	.	.	.	GT	./.
+NC_002945.4	755227	.	N	.	.	.	.	GT	./.
+NC_002945.4	755228	.	N	.	.	.	.	GT	./.
+NC_002945.4	755229	.	N	.	.	.	.	GT	./.
+NC_002945.4	755230	.	N	.	.	.	.	GT	./.
+NC_002945.4	755231	.	N	.	.	.	.	GT	./.
+NC_002945.4	755232	.	N	.	.	.	.	GT	./.
+NC_002945.4	755233	.	N	.	.	.	.	GT	./.
+NC_002945.4	755234	.	N	.	.	.	.	GT	./.
+NC_002945.4	755235	.	N	.	.	.	.	GT	./.
+NC_002945.4	755236	.	N	.	.	.	.	GT	./.
+NC_002945.4	755237	.	N	.	.	.	.	GT	./.
+NC_002945.4	755238	.	N	.	.	.	.	GT	./.
+NC_002945.4	755239	.	N	.	.	.	.	GT	./.
+NC_002945.4	755240	.	N	.	.	.	.	GT	./.
+NC_002945.4	755241	.	N	.	.	.	.	GT	./.
+NC_002945.4	755242	.	N	.	.	.	.	GT	./.
+NC_002945.4	755243	.	N	.	.	.	.	GT	./.
+NC_002945.4	755244	.	N	.	.	.	.	GT	./.
+NC_002945.4	755245	.	N	.	.	.	.	GT	./.
+NC_002945.4	755246	.	N	.	.	.	.	GT	./.
+NC_002945.4	755247	.	N	.	.	.	.	GT	./.
+NC_002945.4	755248	.	N	.	.	.	.	GT	./.
+NC_002945.4	755249	.	N	.	.	.	.	GT	./.
+NC_002945.4	755250	.	N	.	.	.	.	GT	./.
+NC_002945.4	765344	.	G	C	254.963	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:308:-28.0431,-2.70927,0
+NC_002945.4	783337	.	C	T	359.449	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=0;RO=0;RPL=8;RPP=7.94546;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:422:-38.3321,-3.31133,0
+NC_002945.4	804997	.	T	C	222.076	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=0;RO=0;RPL=5;RPP=5.80219;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:264:-24.1189,-2.10721,0
+NC_002945.4	808452	.	T	C	359.38800000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:417:-37.8789,-3.31133,0
+NC_002945.4	808601	.	T	G	315.125	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=3.73412;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:370:-33.5864,-3.61236,0
+NC_002945.4	811737	.	C	A	241.983	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:286:-26.0815,-2.40824,0
+NC_002945.4	812709	.	G	A	315.619	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:372:-33.7943,-3.31133,0
+NC_002945.4	824644	.	T	C	236.24400000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=12.7819;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:289:-26.3528,-2.40824,0
+NC_002945.4	825464	.	N	.	.	.	.	GT	./.
+NC_002945.4	825465	.	N	.	.	.	.	GT	./.
+NC_002945.4	825466	.	N	.	.	.	.	GT	./.
+NC_002945.4	825467	.	N	.	.	.	.	GT	./.
+NC_002945.4	825468	.	N	.	.	.	.	GT	./.
+NC_002945.4	825469	.	N	.	.	.	.	GT	./.
+NC_002945.4	825470	.	N	.	.	.	.	GT	./.
+NC_002945.4	825471	.	N	.	.	.	.	GT	./.
+NC_002945.4	825472	.	N	.	.	.	.	GT	./.
+NC_002945.4	825473	.	N	.	.	.	.	GT	./.
+NC_002945.4	825474	.	N	.	.	.	.	GT	./.
+NC_002945.4	825475	.	N	.	.	.	.	GT	./.
+NC_002945.4	825476	.	N	.	.	.	.	GT	./.
+NC_002945.4	825477	.	N	.	.	.	.	GT	./.
+NC_002945.4	825478	.	N	.	.	.	.	GT	./.
+NC_002945.4	825479	.	N	.	.	.	.	GT	./.
+NC_002945.4	825480	.	N	.	.	.	.	GT	./.
+NC_002945.4	825481	.	N	.	.	.	.	GT	./.
+NC_002945.4	825482	.	N	.	.	.	.	GT	./.
+NC_002945.4	825483	.	N	.	.	.	.	GT	./.
+NC_002945.4	825484	.	N	.	.	.	.	GT	./.
+NC_002945.4	825485	.	N	.	.	.	.	GT	./.
+NC_002945.4	825486	.	N	.	.	.	.	GT	./.
+NC_002945.4	825487	.	N	.	.	.	.	GT	./.
+NC_002945.4	825488	.	N	.	.	.	.	GT	./.
+NC_002945.4	825489	.	N	.	.	.	.	GT	./.
+NC_002945.4	825490	.	N	.	.	.	.	GT	./.
+NC_002945.4	825491	.	N	.	.	.	.	GT	./.
+NC_002945.4	825492	.	N	.	.	.	.	GT	./.
+NC_002945.4	825493	.	N	.	.	.	.	GT	./.
+NC_002945.4	825494	.	N	.	.	.	.	GT	./.
+NC_002945.4	825495	.	N	.	.	.	.	GT	./.
+NC_002945.4	825496	.	N	.	.	.	.	GT	./.
+NC_002945.4	825497	.	N	.	.	.	.	GT	./.
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+NC_002945.4	856011	.	N	.	.	.	.	GT	./.
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+NC_002945.4	861205	.	N	.	.	.	.	GT	./.
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+NC_002945.4	870288	.	N	.	.	.	.	GT	./.
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+NC_002945.4	965405	.	N	.	.	.	.	GT	./.
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+NC_002945.4	965410	.	N	.	.	.	.	GT	./.
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+NC_002945.4	970020	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192625	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192712	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192717	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192725	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192776	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192780	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1277805	.	G	A	81.383	.	AB=0.32;ABP=10.0459;AC=1;AF=0.5;AN=2;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=4.09604;EPPR=3.13803;GTI=0;LEN=1;MEANALT=1;MQM=42.5;MQMR=58.0588;NS=1;NUMALT=1;ODDS=18.7391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=615;RO=17;RPL=2;RPP=7.35324;RPPR=18.4661;RPR=6;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=6;SRP=6.20364;SRR=11;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:17,8:17:615:8:284:-13.9112,0,-47.9677
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+NC_002945.4	1284872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284873	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284874	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284875	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284876	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284877	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284878	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284879	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284880	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284881	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284882	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284883	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284884	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284885	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284886	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284887	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284888	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284889	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284890	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284891	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284892	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284893	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284894	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284896	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284897	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284898	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284899	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284900	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284901	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284902	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284903	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284904	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284905	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284906	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284907	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284908	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284909	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284910	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284911	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284912	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284913	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284914	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284915	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284916	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284917	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284918	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284919	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284920	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284921	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284922	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284923	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284924	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284925	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284926	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284927	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284928	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284929	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1286176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1294514	.	C	T	311.19	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=0;RO=0;RPL=8;RPP=7.94546;RPPR=0;RPR=3;RUN=1;SAF=2;SAP=12.6832;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:379:-34.4305,-3.31133,0
+NC_002945.4	1295798	.	T	C	323.065	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=0;RO=0;RPL=6;RPP=3.87889;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:378:-34.3707,-3.0103,0
+NC_002945.4	1306932	.	G	C	116.579	.	AB=0.461538;ABP=3.17734;AC=1;AF=0.5;AN=2;AO=6;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.0103;EPPR=5.80219;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=26.8433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=262;RO=7;RPL=6;RPP=16.0391;RPPR=10.7656;RPR=0;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=4;SRP=3.32051;SRR=3;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:262:6:230:-17.1533,0,-20.0224
+NC_002945.4	1319269	.	G	C	237.764	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=0;RO=0;RPL=6;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2617,-2.40824,0
+NC_002945.4	1334200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1334259	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1341349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341401	.	A	G	65.4496	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=43.3333;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:109:-9.25416,-0.90309,0
+NC_002945.4	1341405	.	A	G	61.9236	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=43.3333;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:106:-8.90157,-0.90309,0
+NC_002945.4	1341588	.	A	C	57.7445	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:74:-6.9783,-0.60206,0
+NC_002945.4	1341589	.	G	A	58.6438	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:75:-7.06823,-0.60206,0
+NC_002945.4	1341592	.	C	A	46.5929	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:62:-5.86313,-0.60206,0
+NC_002945.4	1341646	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341647	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341648	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341649	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341650	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341651	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341652	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341653	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341654	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341655	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341656	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341657	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341658	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341659	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341660	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341661	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341662	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341663	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341664	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341665	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341666	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341667	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341668	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341669	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341670	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341671	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341672	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341673	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341674	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341675	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341676	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341677	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341678	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341679	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341680	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341681	.	N	.	.	.	.	GT	./.
+NC_002945.4	1342050	.	C	T	55.7253	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=18.6;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:191:-7.38901,-1.50515,0
+NC_002945.4	1342053	.	C	T	29.7948	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=1;NUMALT=1;ODDS=6.85943;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:157:-4.6091,-1.20412,0
+NC_002945.4	1342056	.	G	C	30.679000000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=1;NUMALT=1;ODDS=7.0632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:156:-4.6976,-1.20412,0
+NC_002945.4	1342059	.	C	T	31.5529	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=1;NUMALT=1;ODDS=7.26458;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:154:-4.78506,-1.20412,0
+NC_002945.4	1342105	.	A	G	31.5434	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=1;NUMALT=1;ODDS=7.26239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:147:-4.7841,-1.20412,0
+NC_002945.4	1343741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343780	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343781	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1346016	.	G	A	662.22	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=6.56362;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=35.1036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=0;RO=0;RPL=12;RPP=3.40511;RPPR=0;RPR=10;RUN=1;SAF=12;SAP=3.40511;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:763:-68.9638,-6.62266,0
+NC_002945.4	1347503	.	G	A	297.947	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=16.9077;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=0;RO=0;RPL=6;RPP=3.87889;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:364:-33.1019,-3.0103,0
+NC_002945.4	1351949	.	N	.	.	.	.	GT	./.
+NC_002945.4	1351950	.	N	.	.	.	.	GT	./.
+NC_002945.4	1351951	.	N	.	.	.	.	GT	./.
+NC_002945.4	1351952	.	N	.	.	.	.	GT	./.
+NC_002945.4	1351953	.	N	.	.	.	.	GT	./.
+NC_002945.4	1351954	.	N	.	.	.	.	GT	./.
+NC_002945.4	1355918	.	A	C	306.528	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=16.9077;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:377:-34.2823,-3.0103,0
+NC_002945.4	1362645	.	T	C	470.51099999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=6.62942;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=0;RO=0;RPL=7;RPP=3.15506;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=6.62942;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:550:-49.8337,-4.51545,0
+NC_002945.4	1364293	.	C	G	194.06799999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=1;RPP=10.7656;RPPR=0;RPR=6;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:241:-22.0171,-2.10721,0
+NC_002945.4	1366231	.	A	C	252.206	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=9.04217;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=2;SAP=9.04217;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:309:-28.1354,-2.70927,0
+NC_002945.4	1372878	.	C	A	279.88599999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:331:-30.0748,-3.31133,0
+NC_002945.4	1374303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1374315	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1514842	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514843	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514844	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514845	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514846	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514847	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514859	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514860	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514861	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514862	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514863	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514864	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514865	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514866	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514867	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514868	.	N	.	.	.	.	GT	./.
+NC_002945.4	1514869	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515545	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515546	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515547	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515548	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515549	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515550	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515551	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515552	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515553	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515554	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515555	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515556	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515557	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515558	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515559	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515560	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515561	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515562	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515563	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515564	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515565	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515566	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515567	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515568	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515569	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515570	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515571	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515572	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515573	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515574	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515575	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515576	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515577	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515578	.	N	.	.	.	.	GT	./.
+NC_002945.4	1515579	.	N	.	.	.	.	GT	./.
+NC_002945.4	1527834	.	G	C	294.97	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:346:-31.437,-3.31133,0
+NC_002945.4	1529147	.	T	G	335.833	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=0;RO=0;RPL=7;RPP=3.17734;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=7.18621;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:401:-36.3804,-3.91339,0
+NC_002945.4	1533175	.	A	G	328.098	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=0;RO=0;RPL=4;RPP=4.78696;RPPR=0;RPR=7;RUN=1;SAF=3;SAP=7.94546;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:389:-35.3431,-3.31133,0
+NC_002945.4	1535299	.	T	C	321.097	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.4167;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=3;SAP=9.52472;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:417:-34.74,-3.61236,0
+NC_002945.4	1535303	.	T	C	297.175	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.4167;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=3;SAP=9.52472;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:391:-32.3478,-3.61236,0
+NC_002945.4	1535366	.	T	G	163.714	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46.5714;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=10.7656;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:260:-21.0028,-2.10721,0
+NC_002945.4	1535409	.	N	.	.	.	.	GT	./.
+NC_002945.4	1537373	.	T	G	277.759	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:329:-29.9547,-2.70927,0
+NC_002945.4	1541952	.	A	G	93.4043	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=1;RPP=3.73412;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:119:-11.0954,-0.90309,0
+NC_002945.4	1542136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1542150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1545547	.	A	G	343.37300000000005	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:401:-36.4235,-3.31133,0
+NC_002945.4	1546136	.	A	C	164.981	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=0;RO=0;RPL=3;RPP=3.0103;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:198:-18.1385,-1.80618,0
+NC_002945.4	1546212	.	A	G	102.009	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:128:-11.831,-1.20412,0
+NC_002945.4	1549884	.	C	G	407.59	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=0;RO=0;RPL=8;RPP=4.51363;RPPR=0;RPR=5;RUN=1;SAF=11;SAP=16.5402;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:488:-44.263,-3.91339,0
+NC_002945.4	1553718	.	T	C	223.092	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:273:-24.8561,-2.70927,0
+NC_002945.4	1558604	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558605	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558606	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558607	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558608	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558609	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558610	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558611	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558612	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558613	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558614	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558615	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558616	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558617	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558618	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558619	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558620	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558621	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558622	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558623	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558624	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558625	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558626	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558627	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558628	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558629	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558630	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558631	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558632	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558633	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558634	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558635	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558636	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558637	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558638	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558639	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558640	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558641	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558642	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558643	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558644	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558645	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558646	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558647	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558648	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558649	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558650	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558651	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558652	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558653	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558654	.	N	.	.	.	.	GT	./.
+NC_002945.4	1558655	.	N	.	.	.	.	GT	./.
+NC_002945.4	1562220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1562499	.	A	G	182.447	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:223:-20.3778,-2.10721,0
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+NC_002945.4	1573322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1573323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1573324	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1573327	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1573333	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1576390	.	G	C	364.27	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=0;RO=0;RPL=7;RPP=4.78696;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:424:-38.5132,-3.31133,0
+NC_002945.4	1597853	.	T	C	264.82	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:323:-29.3791,-3.0103,0
+NC_002945.4	1606873	.	A	G	380.25199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=0;RO=0;RPL=8;RPP=4.51363;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=3.17734;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:443:-40.1868,-3.91339,0
+NC_002945.4	1612937	.	N	.	.	.	.	GT	./.
+NC_002945.4	1616806	.	T	C	99.76700000000001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:147:-13.589,-1.20412,0
+NC_002945.4	1619153	.	A	G	55.3821	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=1;RPP=3.0103;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0
+NC_002945.4	1619284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619361	.	T	G	88.7001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=1;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:122:-11.2782,-1.20412,0
+NC_002945.4	1619753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619780	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619781	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619791	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619792	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619810	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619811	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619815	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619816	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619817	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619819	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619820	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619821	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619822	.	N	.	.	.	.	GT	./.
+NC_002945.4	1619823	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623500	.	C	T	84.0968	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=1;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:117:-10.8179,-1.20412,0
+NC_002945.4	1623805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623810	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623811	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623815	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623816	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623817	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623819	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623820	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623821	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623822	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623823	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623824	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623825	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623826	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623827	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623828	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623829	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623830	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623831	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623832	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623833	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623834	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623835	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623836	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623837	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1623853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631529	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631530	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631531	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631532	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631533	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631534	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631535	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631536	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631537	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631538	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631539	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631540	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631541	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631542	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631543	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631544	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631545	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631546	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631547	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631548	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631549	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631550	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631551	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631552	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631553	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631554	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631555	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631556	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631557	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631558	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631559	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631560	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631561	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631562	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631563	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631564	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631565	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631566	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631567	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631568	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631569	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631570	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631571	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631572	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631573	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631574	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631575	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631576	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631577	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631578	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631579	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631580	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631581	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631582	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631583	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631584	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631585	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631586	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631587	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631588	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631589	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631590	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631591	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631592	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631593	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631594	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631595	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631596	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631597	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631598	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631599	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631600	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631601	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631602	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631603	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631604	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631605	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631606	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631607	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631608	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631609	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631610	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631611	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631612	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631613	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631614	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631615	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631616	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631617	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631618	.	N	.	.	.	.	GT	./.
+NC_002945.4	1631619	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1644465	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644466	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644467	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644468	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644469	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644470	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644471	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644472	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644473	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644474	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644475	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644476	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644477	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644478	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644479	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644480	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644481	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644482	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644483	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1644489	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644490	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644491	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644492	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644493	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644494	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644495	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644496	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644497	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644498	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644499	.	N	.	.	.	.	GT	./.
+NC_002945.4	1644500	.	N	.	.	.	.	GT	./.
+NC_002945.4	1645517	.	C	T	25.7577	.	AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=2;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=4.39074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=71;RO=2;RPL=2;RPP=7.35324;RPPR=7.35324;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:71:2:78:-6.19935,0,-5.53696
+NC_002945.4	1647932	.	A	T	296.809	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=0;RO=0;RPL=7;RPP=6.48466;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:380:-34.5535,-3.0103,0
+NC_002945.4	1648112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1648272	.	C	T	85.0561	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=0;RO=0;RPL=1;RPP=3.73412;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:110:-10.2606,-0.90309,0
+NC_002945.4	1652035	.	C	T	390.26199999999994	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:459:-41.6564,-3.61236,0
+NC_002945.4	1658541	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658542	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658543	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658544	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658545	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658546	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658547	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658548	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658549	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658550	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658551	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658552	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658553	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658554	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658555	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658556	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658557	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658558	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658559	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658560	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658561	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658562	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658563	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658564	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658565	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658566	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658567	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658568	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658569	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658570	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658571	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658572	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658573	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658574	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658575	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658576	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658577	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658578	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658579	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658580	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658581	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658582	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658583	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658584	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658585	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658586	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658587	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658588	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658589	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658590	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658591	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658592	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658593	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658594	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658595	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658596	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658597	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658598	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658599	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658600	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658601	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658602	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658603	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658604	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658605	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658606	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658607	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658608	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658609	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658610	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658611	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658612	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658613	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658614	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658615	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658616	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658617	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658618	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658619	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658620	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658621	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658622	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658623	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658624	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658625	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658626	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658627	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658628	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658629	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658630	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658631	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658632	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658633	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658634	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658635	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658636	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658637	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658638	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658639	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658640	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658641	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658642	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658643	.	N	.	.	.	.	GT	./.
+NC_002945.4	1658644	.	N	.	.	.	.	GT	./.
+NC_002945.4	1661807	.	T	G	457.84	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=0;RO=0;RPL=12;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=5.18177;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:550:-49.8098,-4.81648,0
+NC_002945.4	1661808	.	T	A	465.061	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=0;RO=0;RPL=12;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=5.18177;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:558:-50.5319,-4.81648,0
+NC_002945.4	1665441	.	G	A	172.533	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=0;RO=0;RPL=3;RPP=3.0103;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:212:-19.4166,-1.80618,0
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+NC_002945.4	1718789	.	A	G	154.07399999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:195:-17.9228,-1.50515,0
+NC_002945.4	1720220	.	A	G	168.865	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=0;RO=0;RPL=2;RPP=4.45795;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:205:-18.7768,-1.80618,0
+NC_002945.4	1720783	.	C	T	145.845	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=0;RO=0;RPL=2;RPP=3.44459;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:186:-17.0999,-1.50515,0
+NC_002945.4	1734567	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734568	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734569	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734570	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734571	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734572	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734573	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734574	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734575	.	N	.	.	.	.	GT	./.
+NC_002945.4	1734576	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1746004	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748593	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748594	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748595	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748596	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748597	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748598	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748599	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748600	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748601	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748602	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748603	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748604	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748605	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748606	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748607	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748608	.	N	.	.	.	.	GT	./.
+NC_002945.4	1748609	.	N	.	.	.	.	GT	./.
+NC_002945.4	1756814	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1768809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768810	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768811	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768815	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1768817	.	N	.	.	.	.	GT	./.
+NC_002945.4	1768818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769064	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769067	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769078	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769082	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769083	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769084	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769085	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769090	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769091	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769094	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769096	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769098	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769100	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769101	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769102	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769103	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769104	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1769106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769110	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769111	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1769150	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1806623	.	T	G	256.54400000000004	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:302:-27.5377,-2.40824,0
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+NC_002945.4	1820059	.	G	A	243.797	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.263,-2.40824,0
+NC_002945.4	1828062	.	A	T	261.611	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=14.8328;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:320:-29.1339,-2.70927,0
+NC_002945.4	1828979	.	G	C	246.322	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=0;RO=0;RPL=6;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:293:-26.7195,-2.40824,0
+NC_002945.4	1829829	.	N	.	.	.	.	GT	./.
+NC_002945.4	1829830	.	N	.	.	.	.	GT	./.
+NC_002945.4	1829831	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1836968	.	N	.	.	.	.	GT	./.
+NC_002945.4	1836969	.	N	.	.	.	.	GT	./.
+NC_002945.4	1836970	.	N	.	.	.	.	GT	./.
+NC_002945.4	1836971	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853693	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853694	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853695	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853696	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853697	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853698	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853699	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853700	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853701	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853702	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853703	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853704	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853705	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853706	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853707	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853708	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853709	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853713	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853717	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853718	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853726	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853738	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853743	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853746	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853750	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853780	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853791	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853792	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853810	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853811	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853815	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853816	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853817	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853819	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853820	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853821	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853822	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853825	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853827	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1853829	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853830	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853831	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853832	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853833	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853834	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853835	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853836	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853837	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853838	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853839	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853840	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853841	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853842	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853843	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853844	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853845	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853846	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853847	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1853859	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1948846	.	N	.	.	.	.	GT	./.
+NC_002945.4	1948847	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1962735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962737	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1962741	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1962753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962764	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1962766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1962767	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1971854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971859	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971860	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971861	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971862	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971863	.	N	.	.	.	.	GT	./.
+NC_002945.4	1971864	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1971866	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1971868	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1971901	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1971931	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1971994	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972008	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972011	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972013	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972016	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972021	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972022	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972102	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972111	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972113	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972118	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972120	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972124	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1972127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1972128	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1985169	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1987003	.	N	.	.	.	.	GT	./.
+NC_002945.4	1987004	.	N	.	.	.	.	GT	./.
+NC_002945.4	1987005	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1987008	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1987011	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1987019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1987020	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993138	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993142	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993148	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993152	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993154	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993156	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993184	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993186	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993190	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993196	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993200	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993202	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993208	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993210	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993216	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993222	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993457	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993466	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993467	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993473	.	N	.	.	.	.	GT	./.
+NC_002945.4	1993474	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993477	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1993990	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994002	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994006	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994008	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994009	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994010	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994011	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994016	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994018	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994020	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994354	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994355	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994356	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994357	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994358	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994359	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994360	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994361	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994362	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994363	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994364	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994365	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994366	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994367	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994368	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994369	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994371	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994372	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994373	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994374	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994375	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994376	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994377	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994378	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994379	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994380	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994381	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994382	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994383	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994384	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994385	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994386	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994387	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994388	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994389	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994390	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994391	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994392	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994393	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994394	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994395	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994396	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994397	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994398	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994399	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994402	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994403	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994404	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994406	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994407	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994408	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994409	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994410	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994411	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994412	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994413	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994414	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994415	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994416	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994417	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994418	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994419	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994420	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994421	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994422	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994423	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994424	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994425	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994427	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994430	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994432	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994440	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994441	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994442	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994443	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994444	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994445	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994446	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994447	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994448	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994450	.	N	.	.	.	.	GT	./.
+NC_002945.4	1994451	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994460	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1994464	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1995012	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1995014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995016	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995017	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995018	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995020	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995021	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995022	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995023	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995024	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995025	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995026	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995027	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995028	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995029	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995030	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995031	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995032	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995033	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995034	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995035	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995036	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995037	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995038	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995039	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995040	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995041	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995042	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995043	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995044	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995045	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995046	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995047	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995065	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995066	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995067	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995068	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995069	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995070	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995078	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995079	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995082	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995083	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995084	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995085	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995086	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995087	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995088	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995089	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995090	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995091	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995094	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995095	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995096	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995098	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995099	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995100	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995101	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995102	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995103	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995104	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995105	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995110	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995111	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995354	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995355	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995356	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995357	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995358	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995359	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995360	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995361	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995362	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995363	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995364	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995365	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995366	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995367	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995368	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995369	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995370	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995371	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995372	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995373	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995374	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995375	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995376	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995377	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995378	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995379	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995380	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995381	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995382	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995383	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995384	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995385	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995386	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995387	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995388	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995389	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995390	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995391	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995392	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995393	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995394	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995395	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995396	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995397	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995398	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995399	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995400	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995401	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995402	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995403	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995404	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995405	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995406	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995407	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995408	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995409	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995410	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995411	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995412	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995413	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995414	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995415	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995416	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995417	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995418	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995419	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995420	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995421	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995422	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995423	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995424	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995425	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995426	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995427	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995428	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995429	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995430	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995431	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995432	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995433	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995434	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995435	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995436	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995437	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995438	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995439	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995440	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995441	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995442	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995443	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995444	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995445	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995446	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995447	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995448	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995449	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995450	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995451	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995452	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995453	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995454	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995455	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995456	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995457	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995458	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995459	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995460	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995461	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995462	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995463	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995464	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995465	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995466	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995467	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995468	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995469	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995470	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995471	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995472	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995473	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995474	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995475	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995476	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995477	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995478	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995479	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995480	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995481	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995482	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995483	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995484	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995485	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995486	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995487	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995488	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995489	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995490	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995491	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995492	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995493	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995494	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995495	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995496	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995497	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995498	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995499	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995500	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995501	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995502	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995503	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995504	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995505	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995506	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995507	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995508	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995509	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995510	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995511	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995512	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995513	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995514	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995515	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995516	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995517	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995518	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995519	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995520	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995521	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995522	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995523	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995524	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995525	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995526	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995527	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995528	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995529	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995530	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995531	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995532	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995533	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995534	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995535	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995536	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995537	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995538	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995539	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995540	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995541	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995542	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995543	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995544	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995545	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995546	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995547	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995548	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995549	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995550	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995551	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995552	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995553	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995554	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995555	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995556	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995557	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995558	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995559	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995560	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995561	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995562	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995563	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995564	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995565	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995566	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995567	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995568	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995569	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995570	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995571	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995572	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995573	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995574	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995575	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995576	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995577	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995578	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995579	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995580	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995581	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995582	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995583	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995584	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995585	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995586	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995587	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995588	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995589	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995590	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995591	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995592	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995593	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995594	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995595	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995596	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995597	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995598	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995599	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995600	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995601	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995602	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995603	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995604	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995605	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995606	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995607	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995608	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995609	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995610	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995611	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995612	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995613	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995614	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995615	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995616	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995617	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995618	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995619	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995620	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995621	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995622	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995623	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995624	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995625	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995626	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995627	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995628	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995629	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995630	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995631	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995632	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995633	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995634	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995635	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995636	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995637	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995638	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995639	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995640	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995641	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995642	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995643	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995644	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995645	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995646	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995647	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995648	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995649	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995650	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995651	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995652	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995653	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995654	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995655	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995656	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995657	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995658	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995659	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995660	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995661	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995662	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995663	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995664	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995665	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995666	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995667	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995668	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995669	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995670	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995671	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995672	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995673	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995674	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995675	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995676	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995677	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995678	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995679	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995680	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995681	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995682	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995683	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995684	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995685	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995686	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995687	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995688	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995689	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995690	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995691	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995692	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995693	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995694	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995695	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995696	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995697	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995698	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995699	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995700	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995701	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995702	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995703	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995704	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995705	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995706	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995707	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995708	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995709	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995710	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995711	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995712	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995713	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995717	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995718	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995780	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995781	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995791	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995792	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995810	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995811	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995815	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995816	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995817	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995819	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995820	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995821	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995822	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995823	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995824	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995825	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995826	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995827	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995828	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995829	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995830	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995831	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995832	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995833	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995834	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995835	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995836	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995837	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995838	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995839	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995840	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995841	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995842	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995843	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995844	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995845	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995846	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995847	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995859	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995860	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995861	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995862	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995863	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995864	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995865	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995866	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995867	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995868	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995869	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995870	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995871	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995873	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995874	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995875	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995876	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995877	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995878	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995879	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995880	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995881	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995882	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995883	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995884	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995885	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995886	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995887	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995888	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995889	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995890	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995891	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995892	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995893	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995894	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995896	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995897	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995898	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995899	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995900	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995901	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995902	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995903	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995904	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995905	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995906	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995907	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995908	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995909	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995910	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995911	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995912	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995913	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995914	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995915	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995916	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995917	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995918	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995919	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995920	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995921	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995922	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995923	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995924	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995925	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995926	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995927	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995928	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995929	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995930	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995931	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995932	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995933	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995934	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995935	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995936	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995937	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995938	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995939	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995940	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995941	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995942	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995943	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995944	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995945	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995946	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995947	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995948	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995949	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995950	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995951	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995952	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995953	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995954	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995955	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995956	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995957	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995958	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995959	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995960	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995961	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995962	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995963	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995964	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995965	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995966	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995967	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995968	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995969	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995970	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995971	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995972	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995973	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995974	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995975	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995976	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995977	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995978	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995979	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995980	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995981	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995982	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995983	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995984	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995985	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995986	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995987	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995988	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995989	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995990	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995991	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995992	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995993	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995994	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995995	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995996	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995997	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995998	.	N	.	.	.	.	GT	./.
+NC_002945.4	1995999	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996000	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996001	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996002	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996003	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996004	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996005	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996006	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996007	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996008	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996009	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996010	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996011	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996012	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996013	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996016	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996017	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996018	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996020	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996021	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996022	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996023	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996024	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996025	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996026	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996027	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996028	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996029	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996030	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996031	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996032	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996033	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996034	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996035	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996036	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996037	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996038	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996039	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996040	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996041	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996042	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996043	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996044	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996045	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996046	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996047	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996065	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996066	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996067	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996068	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996069	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996070	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996078	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996079	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996082	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996083	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996084	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996085	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996086	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996087	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996088	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996089	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996090	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996091	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996094	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996095	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996096	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996098	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996099	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996100	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996101	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996102	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996103	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996104	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996105	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996110	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996111	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996354	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996355	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996356	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996357	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996358	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996359	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996360	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996361	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996362	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996363	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996364	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996365	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996366	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996367	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996368	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996369	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996370	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996371	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996372	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996373	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996374	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996375	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996376	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996377	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996378	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996379	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996380	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996381	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996382	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996383	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996384	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996385	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996386	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996387	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996388	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996389	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996390	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996391	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996392	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996393	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996394	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996395	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996396	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996397	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996398	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996399	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996400	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996401	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1996947	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996948	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996949	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1996951	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1996953	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1996955	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996956	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996957	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996958	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996959	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996960	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996961	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996962	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996963	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996964	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996965	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996966	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996967	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996968	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996969	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996970	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996971	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996972	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996973	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996974	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996975	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996976	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996977	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996978	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996979	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996980	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996981	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996982	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996983	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996984	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996985	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996986	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996987	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996988	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996989	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996990	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996991	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996992	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996993	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996994	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996995	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996996	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996997	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996998	.	N	.	.	.	.	GT	./.
+NC_002945.4	1996999	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997000	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997001	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997002	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997003	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997004	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997005	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997006	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997007	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997008	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997009	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997010	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997011	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997012	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997013	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997016	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997017	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997018	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997020	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997021	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997022	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997023	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997024	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997025	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997026	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997027	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997028	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997029	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997030	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997031	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997032	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997033	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997034	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997035	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997036	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997037	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997038	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997039	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997040	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997041	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997042	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997043	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997044	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997045	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997046	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997047	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997065	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997066	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997067	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997068	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997069	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997070	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997078	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997079	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997082	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997083	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997084	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997085	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997086	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997087	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997088	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997089	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997090	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997091	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997094	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997095	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997096	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997098	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997099	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997100	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997101	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997102	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997103	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997104	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997105	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997110	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997111	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997250	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997256	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997258	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997263	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997354	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997355	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997356	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997357	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997358	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997359	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997360	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997361	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997362	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997364	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997365	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997366	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997367	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997368	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997369	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997370	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997371	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997372	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997373	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997374	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997375	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997376	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997377	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997378	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997379	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997380	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997381	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997383	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997384	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997385	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997386	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997387	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997388	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997389	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997390	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997391	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997392	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997393	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997395	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997396	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997397	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997398	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997399	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997402	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997403	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997404	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997405	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997406	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997407	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997408	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997409	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997422	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997425	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997426	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997440	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997441	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997442	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997443	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997444	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997446	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997480	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997815	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997818	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997820	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997821	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997828	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997831	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997832	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997833	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997835	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997836	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997837	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997838	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997839	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997841	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997842	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997843	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997844	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997845	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997846	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997847	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997859	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997860	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997861	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997862	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997863	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997864	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997865	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997866	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997867	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997868	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997869	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997870	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997871	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997873	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997874	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997875	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997876	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997877	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997878	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997879	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997880	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997881	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997882	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997883	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997884	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997885	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997886	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997887	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997888	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997890	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997891	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997892	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1997896	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997902	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1997904	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998044	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998045	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998046	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998047	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998065	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998066	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998067	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998068	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998069	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998070	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998078	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998079	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998082	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998083	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998084	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998085	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998086	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998087	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998088	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998089	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998090	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998091	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998094	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998095	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998096	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998098	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998099	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998100	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998101	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998102	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998103	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998104	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998105	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998110	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998111	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998354	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998355	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998356	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998357	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998358	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998359	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998360	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998361	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998362	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998363	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998364	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998365	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998366	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998367	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998368	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998369	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998370	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998371	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998372	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998373	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998374	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998375	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998376	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998377	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998378	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998379	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998380	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998381	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998382	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998383	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998384	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998385	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998386	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998387	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998388	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998389	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998390	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998391	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998392	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998393	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998394	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998395	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998396	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998397	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998398	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998399	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998400	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998401	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998402	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998403	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998404	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998405	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998406	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998407	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998408	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998409	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998410	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998411	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998412	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998413	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998414	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998415	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998416	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998417	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998418	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998419	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998420	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998421	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998422	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998423	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998424	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998425	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998426	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998427	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998428	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998429	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998430	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998431	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998432	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998433	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998434	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998435	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998436	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998437	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998438	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998439	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998440	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998441	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998442	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998443	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998444	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998445	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998446	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998447	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998448	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998449	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998450	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998451	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998452	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998453	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998454	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998455	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998456	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998457	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998458	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998459	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998460	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998461	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998462	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998463	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998464	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998465	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998466	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998467	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998468	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998469	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998470	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998471	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998472	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998473	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998474	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998475	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998476	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998477	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998478	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998479	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998480	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998481	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998482	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998483	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998484	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998485	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998486	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998487	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998488	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998489	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998490	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998491	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998492	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998493	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998494	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998495	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998496	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998497	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998498	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998499	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998500	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998501	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998502	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998503	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998504	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998505	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998506	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998507	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998508	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998509	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998510	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998511	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998512	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998513	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998514	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998515	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998516	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998517	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998518	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998519	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998520	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998521	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998522	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998523	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998524	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998525	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998526	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998527	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998528	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998529	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998530	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998531	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998532	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998533	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998534	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998535	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998536	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998537	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998538	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998539	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998540	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998541	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998542	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998543	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998544	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998545	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998546	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998547	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998548	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998549	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998550	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998551	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998552	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998553	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998554	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998555	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998556	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998557	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998558	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998559	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998560	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998561	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998562	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998563	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998564	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998565	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998566	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998567	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998568	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998569	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998570	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998571	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998572	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998573	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998574	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998575	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998576	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998577	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998578	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998579	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998580	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998581	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998582	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998583	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998584	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998585	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998586	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998587	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998588	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998589	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998590	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998591	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998592	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998593	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998594	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998595	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998596	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998597	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998598	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998599	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998600	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998601	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998602	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998603	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998604	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998605	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998606	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998607	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998608	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998609	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998610	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998611	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998612	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998613	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998614	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998615	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998616	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998617	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998618	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998619	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998620	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998621	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998622	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998623	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998624	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998625	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998626	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998627	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998628	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998629	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998630	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998631	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998632	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998633	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998634	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998635	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998636	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998637	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998638	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998639	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998640	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998641	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998642	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998643	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998644	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998645	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998646	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998647	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998648	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998649	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998650	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998651	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998652	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998653	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998654	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998655	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998656	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998657	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998658	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998659	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998660	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998661	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998662	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998663	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998664	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998665	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998666	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998667	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998668	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998669	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998670	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998671	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998672	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998673	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998674	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998675	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998676	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998677	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998678	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998679	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998680	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998681	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998682	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998683	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998684	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998685	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998686	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998687	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998688	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998689	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998690	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998691	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998692	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998693	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998694	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998695	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998696	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998697	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998698	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998699	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998700	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998701	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998702	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998703	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998704	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998705	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998706	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998707	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998708	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998709	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998710	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998711	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998712	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998713	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998717	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998718	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998761	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998764	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998766	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998773	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998780	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998785	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998791	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998798	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998800	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998802	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998804	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998808	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998810	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998815	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998816	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998819	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998820	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998837	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998838	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998841	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998842	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998843	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998844	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998845	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998846	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998850	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1998869	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998870	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998871	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998873	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998874	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998875	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998876	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998877	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998878	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998879	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998880	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998881	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998882	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998883	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998884	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998885	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998886	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998887	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998888	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998889	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998890	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998891	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998892	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998893	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998894	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998896	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998897	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998898	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998899	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998900	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998901	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998902	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998903	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998904	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998905	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998906	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998907	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998908	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998909	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998910	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998911	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998912	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998913	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998914	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998915	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998916	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998917	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998918	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998919	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998920	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998921	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998922	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998923	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998924	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998925	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998926	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998927	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998928	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998929	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998930	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998931	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998932	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998933	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998934	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998935	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998936	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998937	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998938	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998939	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998940	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998941	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998942	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998943	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998944	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998945	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998946	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998947	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998948	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998949	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998950	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998951	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998952	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998953	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998954	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998955	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998956	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998957	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998958	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998959	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998960	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998961	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998962	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998963	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998964	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998965	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998966	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998967	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998968	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998969	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998970	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998971	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998972	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998973	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998974	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998975	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998976	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998977	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998978	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998979	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998980	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998981	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998982	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998983	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998984	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998985	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998986	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998987	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998988	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998989	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998990	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998991	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998992	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998993	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998994	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998995	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998996	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998997	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998998	.	N	.	.	.	.	GT	./.
+NC_002945.4	1998999	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999000	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999001	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999002	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999003	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999004	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999005	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999006	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999007	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999008	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999009	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999010	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999011	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999012	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999013	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999014	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999015	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999016	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999017	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999018	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999019	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999020	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999021	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999022	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999023	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999024	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999025	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999026	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999027	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999028	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999029	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999030	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999031	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999032	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999033	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999034	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999035	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999036	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999037	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999038	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999039	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999040	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999041	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999042	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999043	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999044	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999045	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999046	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999047	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999065	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999066	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999067	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999068	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999069	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999070	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999078	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999079	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999082	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999083	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999084	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999085	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999086	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999087	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999088	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999089	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999090	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999091	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999094	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999095	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999096	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999098	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999099	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999100	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999101	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999102	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999103	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999104	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999105	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999110	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999111	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999114	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999115	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999118	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999119	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999120	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999126	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999127	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999128	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999131	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999132	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999136	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999137	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999349	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999352	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999354	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999355	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999425	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999426	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999427	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999428	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999429	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999430	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999431	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999432	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999433	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999434	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999435	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999436	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999437	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999438	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999439	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999440	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999441	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999442	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999443	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999444	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999445	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999446	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999447	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999448	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999449	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999450	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999451	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999452	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999453	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999454	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999455	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999456	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999457	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999458	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999459	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999460	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999461	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999462	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999463	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999464	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999465	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999466	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999467	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999468	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999469	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999470	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999471	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999472	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999473	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999474	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999475	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999476	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999477	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999478	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999479	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999480	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999481	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999482	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999483	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999484	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999485	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999486	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999487	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999488	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999489	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999490	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999491	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999492	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999493	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999494	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999495	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999496	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999497	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999498	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999499	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999500	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999501	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999502	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999503	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999504	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999505	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999506	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999507	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999509	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999510	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999511	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999512	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999513	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999514	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999515	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999516	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999521	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999522	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999523	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999524	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999525	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999526	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999527	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999528	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999529	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999530	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999531	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999532	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999533	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999534	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999535	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999536	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999537	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999538	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999539	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999540	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999541	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999542	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999544	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999545	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999546	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999547	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999549	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999550	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999553	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999704	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999705	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999706	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999707	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999708	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999709	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999710	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999711	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999712	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999713	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999717	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999718	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999780	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999781	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999791	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999792	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999810	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999811	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999812	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999813	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999814	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999815	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999816	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999817	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999818	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999819	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999820	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999821	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999822	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999823	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999824	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999825	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999826	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999827	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999828	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999829	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999830	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999831	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999832	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999833	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999834	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999835	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999836	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999837	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999839	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999840	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999841	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999842	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999843	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999844	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999845	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999846	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999847	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999859	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999860	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999861	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999862	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999864	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999879	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999880	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999881	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999883	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999884	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999885	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999886	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999887	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999888	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999889	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999890	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999891	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999892	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999893	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999894	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999896	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999897	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999898	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999899	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999900	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999901	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999904	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999905	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999906	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999907	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999908	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999909	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999910	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999911	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999912	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999913	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999914	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999915	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999916	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999918	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999919	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999920	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999921	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999925	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999931	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999936	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999938	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999941	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999961	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1999974	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999975	.	N	.	.	.	.	GT	./.
+NC_002945.4	1999976	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2000253	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000254	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000255	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000256	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000257	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000258	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000259	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000260	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000261	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000262	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000263	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000264	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000265	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000266	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000267	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000268	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000269	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000270	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000271	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000272	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000273	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000274	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000275	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000276	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000277	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000278	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000279	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000280	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000281	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000282	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000283	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000284	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000285	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000286	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000287	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000288	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000289	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000290	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000291	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000292	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000293	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000294	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000295	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000296	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000297	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000298	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000299	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000300	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000301	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000302	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000303	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000304	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000305	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000306	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000307	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000308	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000309	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000310	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000311	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000312	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000313	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000314	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000315	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000316	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000317	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000318	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000319	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000320	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000321	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000322	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000323	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000324	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000325	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000326	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000327	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000328	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000329	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000330	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000331	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000332	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000333	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000334	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000335	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000336	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000337	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000338	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000339	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000340	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000341	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000342	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000343	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000344	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000345	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000346	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000347	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000348	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000349	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000350	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000351	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000352	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000353	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000354	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000355	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000356	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000357	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000358	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000359	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000360	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000361	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000362	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000363	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000364	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000365	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000366	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000367	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000368	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000369	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000370	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000371	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000372	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000373	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000374	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000375	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000376	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000377	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000378	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000379	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000380	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000381	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000382	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000383	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000384	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000385	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000386	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000387	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000388	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000389	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000390	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000391	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000392	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000393	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000394	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000395	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000396	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000397	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000398	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000399	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000400	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000401	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000402	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000403	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000404	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000405	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000406	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000407	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000408	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000409	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000410	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000411	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000412	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000413	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000414	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000415	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000416	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000417	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000418	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000419	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000420	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000421	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000422	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000423	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000424	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000425	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000426	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000427	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000428	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000429	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000430	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000431	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000432	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000433	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000434	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000435	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000436	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000437	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000438	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000439	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000440	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000441	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000442	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000443	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000444	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000445	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000446	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000447	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000448	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000449	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000450	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000451	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000452	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000453	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000454	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000455	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000456	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000457	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000458	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000459	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000460	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000461	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000462	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000463	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000464	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000465	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000466	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000467	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000468	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000469	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000470	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000471	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000472	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000473	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000474	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000475	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000476	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000477	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000478	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000479	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000480	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000481	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000482	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000483	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000484	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000485	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000486	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000487	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000488	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000489	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000490	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000491	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000492	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000493	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000494	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000495	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000496	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000497	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000498	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000499	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000500	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000501	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000502	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000503	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000504	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000505	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000506	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000507	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000508	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000509	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000510	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000511	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000512	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000513	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000514	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000515	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000516	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000517	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000518	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000519	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000520	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000521	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000522	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000523	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000524	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000525	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000526	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000527	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000528	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000529	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000530	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000531	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000532	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000533	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000534	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000535	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000536	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000537	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000538	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000539	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000540	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000541	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000542	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000543	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000544	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000545	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000546	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000547	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000548	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000549	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000550	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000551	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000552	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000553	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000554	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000555	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000556	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000557	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000558	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000559	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000560	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000561	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000562	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000563	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000564	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000565	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000566	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000567	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000568	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000569	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000570	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000571	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000572	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000573	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000574	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000575	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000576	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000577	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000578	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000579	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000580	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000581	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000582	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000583	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000584	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000585	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000586	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000587	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000588	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000589	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000590	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000591	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000592	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000593	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000594	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000595	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000596	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000597	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000598	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000599	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000600	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000601	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000602	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000603	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000604	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000605	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000606	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000607	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000608	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000609	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000610	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000611	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000612	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000613	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000614	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000615	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000616	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000617	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000618	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000619	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000620	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000621	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000622	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000623	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000624	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000625	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000626	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000627	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000628	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000629	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000630	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000631	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000632	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000633	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000634	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000635	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000636	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000637	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000638	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000639	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000640	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000641	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000642	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000643	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000644	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000645	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000646	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000647	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000648	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000649	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000650	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000651	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000652	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000653	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000654	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000655	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000656	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000657	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000658	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000659	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000660	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000661	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000662	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000663	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000664	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000665	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000666	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000667	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000668	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000669	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000670	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000671	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000672	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000673	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000674	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000675	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000676	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000677	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000678	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000679	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000680	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000681	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000682	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000683	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000684	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000685	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000686	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000687	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000688	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000689	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000690	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000691	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000692	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000693	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000694	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000695	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000696	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000697	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000698	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000699	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000700	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000701	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000702	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000703	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000704	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000705	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000706	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000707	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000708	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000709	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000710	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000711	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000712	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000713	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000714	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000715	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000716	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000717	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000718	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000719	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000720	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000721	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000722	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000723	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000724	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000725	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000726	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000727	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000728	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000729	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000730	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000731	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000732	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000733	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000734	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000735	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000736	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000737	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000738	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000739	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000740	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000741	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000742	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000743	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000744	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000745	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000746	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000747	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000748	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000749	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000750	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000751	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000752	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000753	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000754	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000755	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000756	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000757	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000758	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000759	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000760	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000761	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000762	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000763	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000764	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000765	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000766	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000767	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000768	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000769	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000770	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000771	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000772	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000773	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000774	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000775	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000776	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000777	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000778	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000779	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000780	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000781	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000782	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000783	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000784	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000785	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000786	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000787	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000788	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000789	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000790	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000791	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000792	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000793	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000794	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000795	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000796	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000797	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000798	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000799	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000800	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000801	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000802	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000803	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000804	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000805	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000806	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000807	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000808	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000809	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000810	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000811	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000812	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000813	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000814	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000815	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000816	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000817	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000818	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000819	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000820	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000821	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000822	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000823	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000824	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000825	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000826	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000827	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000828	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000829	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000830	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000831	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000832	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000833	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000834	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000835	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000836	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000837	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000838	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000839	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000840	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000841	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000842	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000843	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000844	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000845	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000846	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000847	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000848	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000849	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000850	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000851	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000852	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000853	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000854	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000855	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000856	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000857	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000858	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000859	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000860	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000861	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000862	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000863	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000864	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000865	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000866	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000867	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000868	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000869	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000870	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000871	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000872	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000873	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000874	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000875	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000876	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000877	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000878	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000879	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000880	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000881	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000882	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000883	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000884	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000885	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000886	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000887	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000888	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000889	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000890	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000891	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000892	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000893	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000894	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000895	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000896	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000897	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000898	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000899	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000900	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000901	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000902	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000903	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000904	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000905	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000906	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000907	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000908	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000909	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000910	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000911	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000912	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000913	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000914	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000915	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000916	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000917	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000918	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000919	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000920	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000921	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000922	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000923	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000924	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000925	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000926	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000927	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000928	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000929	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000930	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000931	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000932	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000933	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000934	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000935	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000936	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000937	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000938	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000939	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000940	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000941	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000942	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000943	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000944	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000945	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000946	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000947	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000948	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000949	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000950	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000951	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000952	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000953	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000954	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000955	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000956	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000957	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000958	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000959	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000960	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000961	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000962	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000963	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000964	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000965	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000966	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000967	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000968	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000969	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000970	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000971	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000972	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000973	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000974	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000975	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000976	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000977	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000978	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000979	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2000981	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000982	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2000984	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000985	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000986	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000987	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000988	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000989	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000990	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000991	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000992	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000993	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000994	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000995	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000996	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000997	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000998	.	N	.	.	.	.	GT	./.
+NC_002945.4	2000999	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001000	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001001	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001002	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001003	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001004	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001005	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001006	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001007	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001008	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001009	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001010	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001011	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001012	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001013	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001014	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001015	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001016	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001017	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001018	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001020	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001021	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001022	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001023	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001024	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001026	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001029	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001030	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001031	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001032	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001033	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001035	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001038	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001039	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001040	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001041	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001071	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001079	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001080	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001081	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001084	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001086	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001087	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001088	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001089	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001090	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001091	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001092	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001100	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001101	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001102	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001103	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001104	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001105	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001106	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001107	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001108	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001109	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001110	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001111	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001112	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001113	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001114	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001115	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001116	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001117	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001118	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001119	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001120	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001121	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001122	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001123	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001124	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001125	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001126	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001127	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001128	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001129	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001130	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001131	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001132	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001133	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001134	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001135	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001136	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001137	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001138	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001139	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001140	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001141	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001142	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001143	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001144	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001145	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001146	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001147	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001148	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001149	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001150	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001151	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001152	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001153	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001154	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001155	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001156	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001157	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001158	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001159	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001160	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001161	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001162	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001163	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001164	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001165	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001166	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001167	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001168	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001169	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001170	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001171	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001172	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001173	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001174	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001175	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001176	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001177	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001178	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001179	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001180	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001181	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001182	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001183	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001184	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001185	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001186	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001187	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001188	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001189	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001190	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001191	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001192	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001193	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001194	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001195	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001196	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001197	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001198	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001199	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001200	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001201	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001202	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001203	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001204	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001205	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001206	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001207	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001208	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001209	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001210	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001211	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001212	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001213	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001214	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001215	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001216	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001217	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001218	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001219	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001220	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001221	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001222	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001223	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001224	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001225	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001226	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001227	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001228	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001229	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001230	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001231	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001232	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001233	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001234	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001235	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001236	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001237	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001238	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001239	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001240	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001241	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001242	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001243	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001244	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001245	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001246	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001247	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001248	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001249	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001250	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001251	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001252	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001253	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001254	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001255	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001256	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001257	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001258	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001259	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001260	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001261	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001262	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001263	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001264	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001265	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001266	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001267	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001268	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001269	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001270	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001271	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001272	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001273	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001274	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001275	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001276	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001277	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001278	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001279	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001280	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001281	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001282	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001283	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001284	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001285	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001286	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001287	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001288	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001289	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001290	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001291	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001292	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001293	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001294	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001295	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001296	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001297	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001298	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001299	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001300	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001301	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001302	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001303	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001304	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001305	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001306	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001307	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001308	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001309	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001310	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001311	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001312	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001313	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001314	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001315	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001316	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001317	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001318	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001319	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001320	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001321	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001322	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001323	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001324	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001325	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001326	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001327	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001328	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001329	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001330	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001331	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001332	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001333	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001334	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001335	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001336	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001337	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001338	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001339	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001340	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001341	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001342	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001343	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001344	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001345	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001346	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001347	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001348	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001349	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001350	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001351	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001352	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001353	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001354	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001355	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001356	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001357	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001358	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001359	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001360	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001361	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001362	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001363	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001364	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001365	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001366	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001367	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001368	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001369	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001370	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001371	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001372	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001373	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001374	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001375	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001376	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001377	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001378	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001379	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001380	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001381	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001382	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001383	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001384	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001385	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001386	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001387	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001388	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001389	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001390	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001391	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001392	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001393	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001394	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001395	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001396	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001397	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001398	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001399	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001400	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001401	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001402	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001403	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001404	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001405	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001406	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001407	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001408	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001409	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001410	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001411	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001412	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001413	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001414	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001415	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001416	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001417	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001418	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001419	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001420	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001421	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001422	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001423	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001424	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001425	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001426	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001427	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001428	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001429	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001430	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001431	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001432	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001433	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001434	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001435	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001436	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001437	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001438	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001439	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001440	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001441	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001442	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001443	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001444	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001445	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001446	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001447	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001448	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001449	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001450	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001451	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001452	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001453	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001454	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001455	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001456	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001457	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001458	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001459	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001460	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001461	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001462	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001463	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001464	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001465	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001466	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001467	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001468	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001469	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001470	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001471	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001472	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001473	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001474	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001475	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001476	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001477	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001478	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001479	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001480	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001481	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001482	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001483	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001484	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001485	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001486	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001487	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001488	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001489	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001490	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001491	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001492	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001493	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001494	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001495	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001496	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001497	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001498	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001499	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001500	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001501	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001502	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001503	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001504	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001505	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001506	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001507	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001508	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001509	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001510	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001511	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001512	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001513	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001514	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001515	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001516	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001517	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001518	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001519	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001520	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001521	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001522	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001523	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001524	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001525	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001526	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001527	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001528	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001529	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001530	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001531	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001532	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001533	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001534	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001535	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001536	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001537	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001538	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001539	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001540	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001541	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001542	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001543	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001544	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001545	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001546	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001547	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001548	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001549	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001550	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001551	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001552	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001553	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001554	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001555	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001556	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001557	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001558	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001559	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001560	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001561	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001562	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001563	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001564	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001565	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001566	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001567	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001568	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001569	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001570	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001571	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001572	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001573	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001574	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001575	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001576	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001577	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001578	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001579	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001580	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001581	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001582	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001583	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001584	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001585	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001586	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001587	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001588	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001589	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001590	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001591	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001592	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001593	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001594	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001595	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001596	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001597	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001598	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001599	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001600	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001601	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001602	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001603	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001604	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001605	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001606	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001607	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001608	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001609	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001610	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001611	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001612	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001613	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001614	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001615	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001616	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001617	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001618	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001619	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001620	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001621	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001622	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001623	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001624	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001625	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001626	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001627	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001628	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001629	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001685	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001693	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001694	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001697	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001700	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001702	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001703	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001704	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001705	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001706	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001707	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001708	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001709	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001710	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001711	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001712	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001713	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001714	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001715	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001716	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001717	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001718	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001719	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001720	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001721	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001722	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001723	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001724	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001725	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001726	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001727	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001728	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001729	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001730	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001731	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001732	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001733	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001734	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001735	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001736	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001737	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001738	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001800	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001803	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001815	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001820	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001832	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001837	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2001899	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001900	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001901	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001902	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001903	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001904	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001905	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001906	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001907	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001908	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001909	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001910	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001911	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001912	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001913	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001914	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001915	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001916	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001917	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001918	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001919	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001920	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001921	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001922	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001923	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001924	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001925	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001926	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001927	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001928	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001929	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001930	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001931	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001932	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001933	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001934	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001935	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001936	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001937	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001938	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001939	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001940	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001941	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001942	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001943	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001944	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001945	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001946	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001947	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001948	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001949	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001950	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001951	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001952	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001953	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001954	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001955	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001956	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001957	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001958	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001959	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001960	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001961	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001962	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001963	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001964	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001965	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001966	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001967	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001968	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001969	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001970	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001971	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001972	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001973	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001974	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001975	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001976	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001977	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001978	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001979	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001980	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001981	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001982	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001983	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001984	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001985	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001986	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001987	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001988	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001989	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001990	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001991	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001992	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001993	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001994	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001995	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001996	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001997	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001998	.	N	.	.	.	.	GT	./.
+NC_002945.4	2001999	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002000	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002001	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002002	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002003	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002004	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002005	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002006	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002007	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002008	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002009	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002010	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002011	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002012	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002013	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002014	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002015	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002016	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002017	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002018	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002019	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002020	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002021	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002022	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002023	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002024	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002025	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002026	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002027	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002028	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002029	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002030	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002031	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002032	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002033	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002034	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002035	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002036	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002037	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002038	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002039	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002040	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002041	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002042	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002043	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002044	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002045	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002046	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002047	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002048	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002049	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002050	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002051	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002052	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002053	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002054	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002055	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002056	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002057	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002058	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002059	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002060	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002061	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002062	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002063	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002064	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002065	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002066	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002067	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002068	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002069	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002070	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002071	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002072	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002073	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002074	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002075	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002076	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002077	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002078	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002079	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002080	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002081	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002082	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002083	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002084	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002085	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002086	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002087	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002088	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002089	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002090	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002091	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002092	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002093	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002094	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002095	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002096	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002097	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002098	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002099	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002100	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002101	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002102	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002103	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002104	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002105	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002106	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002107	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002108	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002109	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002110	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002111	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002112	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002113	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002114	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002115	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002116	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002117	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002118	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002119	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002120	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002121	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002122	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002123	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002124	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002125	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002126	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002127	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002128	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002129	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002130	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002131	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002132	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002133	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002134	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002135	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002136	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002137	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002138	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002139	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002140	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002141	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002142	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002143	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002144	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002145	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002146	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002147	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002148	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002149	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002150	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002151	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002152	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002153	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002154	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002155	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002156	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002157	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002158	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002159	.	N	.	.	.	.	GT	./.
+NC_002945.4	2002160	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2007634	.	C	T	169.122	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=0;RO=0;RPL=5;RPP=8.80089;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=8.80089;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:214:-19.5983,-1.80618,0
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+NC_002945.4	2016198	.	C	T	321.405	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=0;RO=0;RPL=6;RPP=3.87889;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=6.48466;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:378:-34.3686,-3.0103,0
+NC_002945.4	2020329	.	N	.	.	.	.	GT	./.
+NC_002945.4	2020330	.	N	.	.	.	.	GT	./.
+NC_002945.4	2020331	.	N	.	.	.	.	GT	./.
+NC_002945.4	2020332	.	N	.	.	.	.	GT	./.
+NC_002945.4	2020333	.	N	.	.	.	.	GT	./.
+NC_002945.4	2020334	.	N	.	.	.	.	GT	./.
+NC_002945.4	2020335	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2022558	.	N	.	.	.	.	GT	./.
+NC_002945.4	2022559	.	N	.	.	.	.	GT	./.
+NC_002945.4	2022560	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2022581	.	N	.	.	.	.	GT	./.
+NC_002945.4	2022582	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2022584	.	N	.	.	.	.	GT	./.
+NC_002945.4	2022585	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2083605	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2140720	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2140734	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2140771	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2140773	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2246206	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246207	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246208	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246209	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246210	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246211	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246212	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246213	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246214	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246215	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246216	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246217	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246218	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246219	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246220	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246221	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246222	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246223	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246224	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246225	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246226	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246227	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246228	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246229	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246230	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246231	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246232	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246233	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246234	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246235	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246236	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246237	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246238	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246239	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246240	.	N	.	.	.	.	GT	./.
+NC_002945.4	2253148	.	T	C	233.412	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:281:-25.6224,-2.40824,0
+NC_002945.4	2257546	.	C	A	405.759	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=16.5402;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=0;RO=0;RPL=8;RPP=4.51363;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=3.17734;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:486:-44.0799,-3.91339,0
+NC_002945.4	2260145	.	G	A	90.6274	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:116:-10.8177,-0.90309,0
+NC_002945.4	2271995	.	N	.	.	.	.	GT	./.
+NC_002945.4	2271996	.	N	.	.	.	.	GT	./.
+NC_002945.4	2271997	.	N	.	.	.	.	GT	./.
+NC_002945.4	2271998	.	N	.	.	.	.	GT	./.
+NC_002945.4	2271999	.	N	.	.	.	.	GT	./.
+NC_002945.4	2272000	.	N	.	.	.	.	GT	./.
+NC_002945.4	2272001	.	N	.	.	.	.	GT	./.
+NC_002945.4	2275806	.	A	G	118.595	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=4;RPP=6.91895;RPPR=0;RPR=1;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:152:-13.977,-1.50515,0
+NC_002945.4	2281890	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281891	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281892	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281893	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281894	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281895	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281896	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281897	.	N	.	.	.	.	GT	./.
+NC_002945.4	2281898	.	N	.	.	.	.	GT	./.
+NC_002945.4	2283200	.	A	G	331.05800000000005	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=0;RO=0;RPL=7;RPP=4.78696;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:389:-35.3381,-3.31133,0
+NC_002945.4	2283218	.	C	G	286.01	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=0;RO=0;RPL=7;RPP=6.48466;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:339:-30.8291,-3.0103,0
+NC_002945.4	2283220	.	A	G	304.607	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:365:-33.194,-3.0103,0
+NC_002945.4	2283227	.	A	G	303.677	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:364:-33.1009,-3.0103,0
+NC_002945.4	2283235	.	G	A	283.698	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:342:-31.1031,-3.0103,0
+NC_002945.4	2283236	.	G	C	276.411	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:334:-30.3743,-3.0103,0
+NC_002945.4	2283350	.	C	T	210.00099999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:256:-23.3885,-2.10721,0
+NC_002945.4	2283353	.	G	T	222.76	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:270:-24.6644,-2.10721,0
+NC_002945.4	2283355	.	G	C	179.54	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=3;RPP=3.0103;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,6:0:0:6:223:-20.1172,-1.80618,0
+NC_002945.4	2283362	.	A	T	213.472	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=5;RPP=5.80219;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:257:-23.4803,-2.10721,0
+NC_002945.4	2283366	.	G	A	210.734	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=0;RO=0;RPL=5;RPP=5.80219;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:254:-23.2065,-2.10721,0
+NC_002945.4	2283367	.	C	G	193.392	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=0;RO=0;RPL=5;RPP=5.80219;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:235:-21.4723,-2.10721,0
+NC_002945.4	2283368	.	G	C	227.132	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=0;RO=0;RPL=5;RPP=5.80219;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:272:-24.8464,-2.10721,0
+NC_002945.4	2283371	.	C	A	213.477	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=5;RPP=5.80219;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:257:-23.4809,-2.10721,0
+NC_002945.4	2284747	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284748	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284749	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284750	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284751	.	N	.	.	.	.	GT	./.
+NC_002945.4	2286027	.	G	A	357.936	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:417:-37.8798,-3.31133,0
+NC_002945.4	2286419	.	G	T	40.1791	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=0;RO=0;RPL=1;RPP=3.0103;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:55:-5.22172,-0.60206,0
+NC_002945.4	2286517	.	T	C	30.7099	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.06975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:45:-4.27447,-0.60206,0
+NC_002945.4	2286536	.	N	.	.	.	.	GT	./.
+NC_002945.4	2286537	.	N	.	.	.	.	GT	./.
+NC_002945.4	2286538	.	N	.	.	.	.	GT	./.
+NC_002945.4	2286539	.	N	.	.	.	.	GT	./.
+NC_002945.4	2286540	.	N	.	.	.	.	GT	./.
+NC_002945.4	2286541	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292403	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292404	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292405	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292406	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292407	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292408	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292409	.	N	.	.	.	.	GT	./.
+NC_002945.4	2292410	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2466151	.	N	.	.	.	.	GT	./.
+NC_002945.4	2466152	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2493203	.	A	G	194.49200000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=0;RO=0;RPL=2;RPP=4.45795;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:236:-21.6125,-1.80618,0
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+NC_002945.4	2499949	.	G	A	540.367	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=4.9405;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=0;RO=0;RPL=9;RPP=3.0103;RPPR=0;RPR=9;RUN=1;SAF=6;SAP=7.35324;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:628:-56.8341,-5.41854,0
+NC_002945.4	2506199	.	A	C	248.645	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:299:-27.2194,-2.70927,0
+NC_002945.4	2508626	.	G	T	253.581	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=7.94546;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=0;RO=0;RPL=7;RPP=4.78696;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:307:-27.8915,-3.31133,0
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+NC_002945.4	2513801	.	C	A	113.115	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:140:-12.9416,-1.20412,0
+NC_002945.4	2520576	.	C	G	247.657	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:304:-27.6805,-2.70927,0
+NC_002945.4	2524942	.	G	A	181.699	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:219:-20.0601,-1.80618,0
+NC_002945.4	2526548	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526549	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526550	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526551	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526552	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526553	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526554	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526555	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526556	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526557	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526558	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526559	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526560	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526561	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526562	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526563	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526564	.	N	.	.	.	.	GT	./.
+NC_002945.4	2526565	.	N	.	.	.	.	GT	./.
+NC_002945.4	2527035	.	G	A	186.373	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=0;RO=0;RPL=2;RPP=4.45795;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:237:-21.7037,-1.80618,0
+NC_002945.4	2528517	.	T	C	244.12900000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:295:-26.8982,-2.40824,0
+NC_002945.4	2529413	.	G	C	215.485	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:262:-23.9369,-2.10721,0
+NC_002945.4	2531029	.	A	C	206.592	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:247:-22.5704,-2.10721,0
+NC_002945.4	2532958	.	G	A	303.851	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:359:-32.6174,-3.31133,0
+NC_002945.4	2574419	.	T	C	144.901	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:185:-17.0055,-1.50515,0
+NC_002945.4	2584190	.	C	G	242.25599999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=0;RO=0;RPL=1;RPP=12.7819;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:300:-27.3519,-2.40824,0
+NC_002945.4	2585940	.	A	C	222.044	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:264:-24.1157,-2.10721,0
+NC_002945.4	2595920	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595921	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595922	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595923	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595924	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595925	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595926	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595927	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595928	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595929	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595930	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595931	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595932	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595933	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595934	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595935	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595936	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595937	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595938	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595939	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595940	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595941	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595942	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595943	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595944	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595945	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595946	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595947	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595948	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595949	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595950	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595951	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595952	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595953	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595954	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595955	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595956	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595957	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595958	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595959	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595960	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595961	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595962	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595963	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595964	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595965	.	N	.	.	.	.	GT	./.
+NC_002945.4	2595966	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665924	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665925	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665926	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665927	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665928	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665929	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665932	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665933	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665936	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665937	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665938	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665939	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665940	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665941	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665944	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665945	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665946	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665949	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665950	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665951	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665952	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665953	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665954	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665955	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665956	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665957	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665958	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665959	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665962	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665963	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665964	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665967	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665968	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665969	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665970	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665971	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665972	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665973	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665974	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665975	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665976	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665977	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665978	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665979	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665980	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665981	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665982	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665983	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665984	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665985	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665986	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665987	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665988	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665989	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665990	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665991	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665992	.	N	.	.	.	.	GT	./.
+NC_002945.4	2665993	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665996	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2665999	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666000	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2666003	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666004	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666005	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666006	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666007	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666008	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666009	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666010	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666011	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666012	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666013	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666014	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666015	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666016	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666017	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666018	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666019	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666020	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666021	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666022	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666023	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666024	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666025	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666026	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666027	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666028	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666029	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666030	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666031	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666032	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666033	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666034	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666035	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666036	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666037	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666038	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666039	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666040	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666041	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666042	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666043	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666044	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666045	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666046	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666047	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666048	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666049	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666050	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666051	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666052	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666053	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666054	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666055	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666056	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666057	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666058	.	N	.	.	.	.	GT	./.
+NC_002945.4	2666059	.	N	.	.	.	.	GT	./.
+NC_002945.4	2667489	.	T	C	263.795	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:310:-28.2627,-2.40824,0
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+NC_002945.4	2684022	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2852048	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852049	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852050	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852051	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852052	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852053	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852054	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852055	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852056	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852057	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852058	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852059	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852060	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852061	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852062	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852063	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852064	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852065	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852066	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852067	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852068	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852069	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852070	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852071	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852072	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852073	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852074	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852075	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852076	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852077	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852078	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852079	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852080	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852081	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852082	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852083	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852084	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852085	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852086	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852087	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852088	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852089	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852090	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852091	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852092	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852093	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852094	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852095	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852096	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852097	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852098	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852099	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852100	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852101	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852102	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852103	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852104	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852105	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852106	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852107	.	N	.	.	.	.	GT	./.
+NC_002945.4	2852108	.	N	.	.	.	.	GT	./.
+NC_002945.4	2859177	.	G	T	301.881	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=0;RO=0;RPL=8;RPP=10.8276;RPPR=0;RPR=2;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:362:-32.9213,-3.0103,0
+NC_002945.4	2860838	.	G	A	246.305	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:293:-26.7179,-2.40824,0
+NC_002945.4	2862528	.	T	C	358.57599999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:424:-38.4879,-3.61236,0
+NC_002945.4	2863367	.	T	G	144.204	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=0;RO=0;RPL=2;RPP=4.45795;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:178:-16.3107,-1.80618,0
+NC_002945.4	2867619	.	G	A	212.40099999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.32051;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=12.7022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=13;RO=1;RPL=3;RPP=3.32051;RPPR=5.18177;RPR=4;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:1,7:1:13:7:263:-22.7254,-1.10825,0
+NC_002945.4	2870624	.	T	C	334.844	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=7.94546;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=0;RO=0;RPL=9;RPP=12.6832;RPPR=0;RPR=2;RUN=1;SAF=3;SAP=7.94546;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:410:-37.243,-3.31133,0
+NC_002945.4	2873027	.	A	G	291.341	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:344:-31.3129,-2.70927,0
+NC_002945.4	2875783	.	A	G	256.63599999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:325:-29.5907,-2.70927,0
+NC_002945.4	2878950	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878951	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878952	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878953	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878954	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878955	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878956	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878957	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878958	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878959	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878960	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878961	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878962	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878963	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878964	.	N	.	.	.	.	GT	./.
+NC_002945.4	2878965	.	N	.	.	.	.	GT	./.
+NC_002945.4	2886118	.	C	T	80.3982	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=2;RPP=3.73412;RPPR=0;RPR=1;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:105:-9.79478,-0.90309,0
+NC_002945.4	2891529	.	A	G	278.532	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:326:-29.6799,-2.70927,0
+NC_002945.4	2893045	.	A	G	274.033	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=2;SAP=9.04217;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:327:-29.7741,-2.70927,0
+NC_002945.4	2896650	.	C	T	312.565	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=0;RO=0;RPL=7;RPP=4.78696;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:367:-33.3427,-3.31133,0
+NC_002945.4	2900051	.	N	.	.	.	.	GT	./.
+NC_002945.4	2900052	.	N	.	.	.	.	GT	./.
+NC_002945.4	2900053	.	N	.	.	.	.	GT	./.
+NC_002945.4	2900054	.	N	.	.	.	.	GT	./.
+NC_002945.4	2900055	.	N	.	.	.	.	GT	./.
+NC_002945.4	2900525	.	A	G	259.594	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=0;RO=0;RPL=6;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:312:-28.4448,-2.40824,0
+NC_002945.4	2915413	.	A	G	139.42	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=0;RO=0;RPL=2;RPP=3.44459;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:179:-16.4575,-1.50515,0
+NC_002945.4	2915862	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915863	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915864	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915865	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915866	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915867	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915868	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915869	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915870	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915871	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915872	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915873	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915874	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915875	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915876	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915877	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915878	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915879	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915880	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915881	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915882	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915883	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915884	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915885	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915886	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915887	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915888	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915889	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915890	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915891	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915892	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915893	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915894	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915895	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915896	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915897	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915898	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915899	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915900	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915901	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915902	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915903	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915904	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915905	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915906	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915907	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915908	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915909	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915910	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915911	.	N	.	.	.	.	GT	./.
+NC_002945.4	2915912	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2983580	.	A	G	283.988	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:332:-30.2255,-2.70927,0
+NC_002945.4	2984156	.	T	G	458.033	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=16.582;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=0;RO=0;RPL=10;RPP=5.18177;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=3.55317;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:547:-49.5426,-4.81648,0
+NC_002945.4	2994692	.	T	C	145.586	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:210:-19.1901,-2.10721,0
+NC_002945.4	2994917	.	C	T	353.1	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=14.5915;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:426:-38.6672,-3.61236,0
+NC_002945.4	2998243	.	C	G	228.83900000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:269:-24.5733,-2.10721,0
+NC_002945.4	2999310	.	C	T	59.1625	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=1;RPP=3.0103;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:75:-7.1201,-0.60206,0
+NC_002945.4	3002605	.	C	T	405.298	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,13:0:0:13:474:-42.8163,-3.91339,0
+NC_002945.4	3005912	.	T	C	361.236	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=0;RO=0;RPL=2;RPP=14.5915;RPPR=0;RPR=10;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:435:-39.4809,-3.61236,0
+NC_002945.4	3015321	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015322	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015323	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015324	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015325	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015326	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015327	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015328	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015329	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015330	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015331	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015332	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015333	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015334	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015335	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015336	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015337	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015560	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015561	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015562	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015563	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015564	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015565	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015566	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015567	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015568	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015569	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015570	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015571	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015572	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015573	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015574	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015575	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015576	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015577	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015578	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015579	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015580	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015581	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015582	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015583	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015584	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015585	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015586	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015587	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015588	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015589	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015590	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015591	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015592	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015593	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015594	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015595	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015596	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015597	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015598	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015599	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015600	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015601	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015602	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015603	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015604	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015605	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015606	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015607	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015608	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015609	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015610	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015611	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015612	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015613	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015615	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015616	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015617	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015618	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015619	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015620	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015621	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015622	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015623	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015625	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015626	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015627	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015628	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015629	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015686	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015687	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015688	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015689	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015690	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015691	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015692	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015693	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015694	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015695	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015696	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015697	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015698	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015699	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015700	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015701	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015702	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015703	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015704	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015705	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015708	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015709	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015714	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015719	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015720	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015721	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015722	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015723	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015725	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015726	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015728	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015732	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015734	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015736	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015737	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015738	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015739	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015740	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015743	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015747	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015748	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015749	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015750	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015751	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015752	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015753	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015754	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015755	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015756	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015757	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015758	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3015760	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015761	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015762	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015763	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015764	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015765	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015766	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015767	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015768	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015769	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015770	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015771	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015772	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015773	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015774	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015775	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015776	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015777	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015778	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015779	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015780	.	N	.	.	.	.	GT	./.
+NC_002945.4	3015781	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3108448	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124509	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124510	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124511	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124512	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124513	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124514	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124515	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124516	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124517	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124518	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124519	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124521	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124522	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124523	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124525	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124526	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124534	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124537	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124538	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124541	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124542	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124545	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124546	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124550	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124551	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124552	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124553	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124555	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124556	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124558	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124559	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124560	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124561	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124562	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124563	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124564	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124565	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124566	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124567	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124568	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124569	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124570	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124571	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124572	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124573	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124575	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124576	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124577	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124578	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124579	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124580	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124581	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124582	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124584	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124586	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124587	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124588	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124589	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124590	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124591	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124592	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124593	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124594	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124598	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124600	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124602	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3156909	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156910	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156911	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156912	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156913	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156914	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156915	.	N	.	.	.	.	GT	./.
+NC_002945.4	3156916	.	N	.	.	.	.	GT	./.
+NC_002945.4	3164448	.	A	G	318.705	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:375:-34.0986,-3.0103,0
+NC_002945.4	3168084	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168085	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168086	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168087	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168088	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168089	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168090	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168091	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168092	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168093	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168094	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168095	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168096	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168097	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168098	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168099	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168100	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168101	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168102	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168103	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168104	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168105	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168106	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168107	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168108	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168109	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168110	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168111	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168112	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168113	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168114	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168115	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168116	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168117	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168118	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168119	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168120	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168121	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168122	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168123	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168124	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168125	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168126	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168127	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168128	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168129	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168130	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168131	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168132	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168133	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168134	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168135	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168136	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168137	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168138	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168139	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168140	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168141	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168142	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168143	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168144	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168145	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168146	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168147	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168148	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168149	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168150	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168151	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168152	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168153	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168154	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168155	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168156	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168157	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168158	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168159	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168160	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168161	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168162	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168163	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168164	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168165	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168166	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168167	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168168	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168169	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168170	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168171	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168172	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168173	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168174	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168175	.	N	.	.	.	.	GT	./.
+NC_002945.4	3168637	.	G	A	238.08	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:302:-27.5364,-2.40824,0
+NC_002945.4	3173568	.	T	C	253.005	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:296:-26.9899,-2.40824,0
+NC_002945.4	3182507	.	A	G	264.962	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=0;RO=0;RPL=6;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=2;SAP=9.04217;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:319:-29.043,-2.70927,0
+NC_002945.4	3186815	.	C	T	200.322	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=0;RO=0;RPL=6;RPP=10.7656;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:270:-24.6636,-2.10721,0
+NC_002945.4	3187411	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187412	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187413	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187414	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187415	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187416	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187417	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187418	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187419	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187420	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187421	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187422	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187423	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187424	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187425	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187426	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187427	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187428	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187429	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187430	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187431	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187432	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187433	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187434	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187435	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187436	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187437	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187438	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187439	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187440	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187441	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187442	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187443	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187444	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187445	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187446	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187447	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187448	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187449	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187450	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187451	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187452	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187453	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187454	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187455	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187456	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187457	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187458	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187459	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187460	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187461	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187462	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187463	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187464	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187465	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187466	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187467	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187468	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187469	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187470	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187471	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187472	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187473	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187474	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187475	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187476	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187477	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187478	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187479	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187480	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187481	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187482	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187483	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187484	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187485	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187486	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187487	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187488	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187489	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187490	.	N	.	.	.	.	GT	./.
+NC_002945.4	3187491	.	N	.	.	.	.	GT	./.
+NC_002945.4	3190941	.	C	A	355.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:417:-37.85,-3.61236,0
+NC_002945.4	3191792	.	A	G	320.801	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=0;RO=0;RPL=3;RPP=7.94546;RPPR=0;RPR=8;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:381:-34.6134,-3.31133,0
+NC_002945.4	3193631	.	A	G	131.872	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=12.7819;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=7;RPP=12.7819;RPPR=0;RPR=1;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:204:-18.6057,-2.40824,0
+NC_002945.4	3193687	.	A	G	85.8587	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.75;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:135:-10.9941,-1.20412,0
+NC_002945.4	3209270	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209271	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209272	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209273	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209274	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209275	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209276	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209277	.	N	.	.	.	.	GT	./.
+NC_002945.4	3209278	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3300419	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3386054	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3401008	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3401077	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3439578	.	G	A	221.923	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:264:-24.0755,-2.40824,0
+NC_002945.4	3448165	.	A	G	203.238	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:251:-22.934,-2.10721,0
+NC_002945.4	3449019	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3456448	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456449	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456450	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456451	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456452	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3456454	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3456456	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456457	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456458	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456459	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456460	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456461	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456462	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456463	.	N	.	.	.	.	GT	./.
+NC_002945.4	3456464	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3461304	.	G	T	249.49599999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:297:-27.0139,-3.0103,0
+NC_002945.4	3464485	.	C	T	134.33100000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=4;RPP=6.91895;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:180:-16.5507,-1.50515,0
+NC_002945.4	3464524	.	T	C	61.9962	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0
+NC_002945.4	3468669	.	C	A	498.495	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=3.55317;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:575:-52.0725,-4.81648,0
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+NC_002945.4	3482644	.	A	T	160.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:196:-17.9562,-1.80618,0
+NC_002945.4	3484836	.	A	G	140.665	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:176:-16.184,-1.50515,0
+NC_002945.4	3486507	.	T	A	236.46099999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=0;RO=0;RPL=6;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:291:-26.5294,-2.40824,0
+NC_002945.4	3490062	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490063	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490064	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490065	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490066	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490067	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490068	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490069	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490070	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490071	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490072	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490073	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490074	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490075	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490076	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490077	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490078	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490079	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490080	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490081	.	N	.	.	.	.	GT	./.
+NC_002945.4	3490082	.	N	.	.	.	.	GT	./.
+NC_002945.4	3493554	.	T	G	297.671	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:349:-31.7699,-2.70927,0
+NC_002945.4	3495510	.	C	T	273.274	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:325:-29.5555,-3.0103,0
+NC_002945.4	3496411	.	A	C	392.74	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=0;RO=0;RPL=7;RPP=3.17734;RPPR=0;RPR=6;RUN=1;SAF=10;SAP=11.1951;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:464:-42.0887,-3.91339,0
+NC_002945.4	3497957	.	C	T	468.875	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.15506;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=0;RO=0;RPL=8;RPP=3.15506;RPPR=0;RPR=7;RUN=1;SAF=9;SAP=4.31318;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,15:0:0:15:544:-49.1174,-4.51545,0
+NC_002945.4	3517673	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519079	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519081	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519082	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519083	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519084	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519085	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519086	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519087	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519098	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519099	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519100	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519101	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519102	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519103	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519105	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519107	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519108	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519109	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519110	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519111	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519112	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519114	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519115	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519116	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519117	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519118	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519119	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519120	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519121	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519122	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519123	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519124	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519125	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519126	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519128	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519129	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519130	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519131	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519132	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519133	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519134	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519135	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519136	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519137	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519138	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519139	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519140	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519141	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519142	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3519145	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519146	.	N	.	.	.	.	GT	./.
+NC_002945.4	3519147	.	N	.	.	.	.	GT	./.
+NC_002945.4	3521053	.	G	C	84.1254	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:109:-10.1675,-0.90309,0
+NC_002945.4	3537037	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537038	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537039	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537040	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537041	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537042	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537043	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537044	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537045	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537046	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537047	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537048	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537049	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537050	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537051	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537052	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537053	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537054	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537055	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537056	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537057	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537058	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537059	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537060	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537061	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537062	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537063	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537064	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537065	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537066	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537067	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537068	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537069	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537070	.	N	.	.	.	.	GT	./.
+NC_002945.4	3537071	.	N	.	.	.	.	GT	./.
+NC_002945.4	3546799	.	C	T	267.832	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=0;RO=0;RPL=3;RPP=6.48466;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:319:-29.0113,-3.0103,0
+NC_002945.4	3549019	.	A	G	246.53900000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:291:-26.5371,-2.40824,0
+NC_002945.4	3553353	.	A	G	189.62	.	AB=0.48;ABP=3.09716;AC=1;AF=0.5;AN=2;AO=12;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=3.0103;EPPR=4.51363;GTI=0;LEN=1;MEANALT=1;MQM=48.4167;MQMR=47.8462;NS=1;NUMALT=1;ODDS=39.6078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=431;RO=13;RPL=0;RPP=29.068;RPPR=31.2394;RPR=12;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=5;SRP=4.51363;SRR=8;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:13,12:13:431:12:427:-26.6774,0,-25.5322
+NC_002945.4	3558701	.	G	T	777.745	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=7.26639;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=39.2625;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=0;RO=0;RPL=11;RPP=3.79203;RPPR=0;RPR=14;RUN=1;SAF=13;SAP=3.09716;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:893:-80.6764,-7.52575,0
+NC_002945.4	3562834	.	A	G	472.082	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=0;RO=0;RPL=8;RPP=3.0103;RPPR=0;RPR=8;RUN=1;SAF=6;SAP=5.18177;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,16:0:0:16:558:-50.3845,-4.81648,0
+NC_002945.4	3564240	.	G	A	97.1811	.	AB=0.545455;ABP=3.20771;AC=1;AF=0.5;AN=2;AO=6;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.0103;EPPR=3.44459;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=21.2552;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=185;RO=5;RPL=2;RPP=4.45795;RPPR=3.44459;RPR=4;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=4;SRP=6.91895;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:185:6:189:-14.0052,0,-13.6942
+NC_002945.4	3567535	.	A	G	360.375	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=0;RO=0;RPL=9;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:429:-38.9388,-3.61236,0
+NC_002945.4	3574014	.	T	C	408.293	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=7;SAP=3.17734;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:474:-42.9909,-3.91339,0
+NC_002945.4	3580956	.	A	G	231.695	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=12.7819;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:284:-25.8979,-2.40824,0
+NC_002945.4	3582382	.	G	C	230.25900000000001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=0;RO=0;RPL=2;RPP=5.80219;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:273:-24.9371,-2.10721,0
+NC_002945.4	3588093	.	T	C	258.001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=0;RO=0;RPL=6;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:308:-28.0813,-2.40824,0
+NC_002945.4	3613220	.	G	A	357.814	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=3.73412;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:417:-37.8554,-3.61236,0
+NC_002945.4	3624371	.	A	G	268.607	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=6;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:319:-29.0395,-2.70927,0
+NC_002945.4	3626128	.	T	C	254.937	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:302:-27.4965,-2.70927,0
+NC_002945.4	3645682	.	T	C	441.25	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=7.89611;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=0;RO=0;RPL=5;RPP=7.89611;RPPR=0;RPR=11;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:521:-47.1843,-4.81648,0
+NC_002945.4	3646293	.	C	A	620.648	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=8.07707;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=33.7174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=0;RO=0;RPL=9;RPP=3.94093;RPPR=0;RPR=12;RUN=1;SAF=8;SAP=5.59539;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:721:-65.1874,-6.32163,0
+NC_002945.4	3667823	.	A	G	588.901	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=3.12459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=0;RO=0;RPL=11;RPP=4.03889;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=3.12459;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:677:-61.2392,-5.71957,0
+NC_002945.4	3677561	.	A	G	149.813	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=0;RO=0;RPL=2;RPP=3.44459;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:186:-17.0988,-1.50515,0
+NC_002945.4	3680142	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680143	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680144	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680145	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680146	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680147	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680148	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680149	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680150	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680151	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680152	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680153	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680154	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680155	.	N	.	.	.	.	GT	./.
+NC_002945.4	3680156	.	N	.	.	.	.	GT	./.
+NC_002945.4	3681820	.	N	.	.	.	.	GT	./.
+NC_002945.4	3681821	.	N	.	.	.	.	GT	./.
+NC_002945.4	3681822	.	N	.	.	.	.	GT	./.
+NC_002945.4	3681823	.	N	.	.	.	.	GT	./.
+NC_002945.4	3681824	.	N	.	.	.	.	GT	./.
+NC_002945.4	3681825	.	N	.	.	.	.	GT	./.
+NC_002945.4	3684006	.	G	A	160.64	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=1;RPP=8.80089;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:199:-18.2272,-1.80618,0
+NC_002945.4	3686915	.	G	A	247.16	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=0;RO=0;RPL=7;RPP=12.7819;RPPR=0;RPR=1;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:301:-27.4443,-2.40824,0
+NC_002945.4	3688037	.	C	G	105.696	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=0;RO=0;RPL=1;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:132:-12.1996,-1.20412,0
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+NC_002945.4	3758837	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3759924	.	N	.	.	.	.	GT	./.
+NC_002945.4	3759925	.	N	.	.	.	.	GT	./.
+NC_002945.4	3759926	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3759928	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3759937	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3759942	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760259	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760287	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760288	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760291	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760313	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760316	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760318	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760320	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760321	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760322	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760323	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760324	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760325	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760326	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760327	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760328	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760329	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760330	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760331	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760332	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760333	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760334	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3760338	.	N	.	.	.	.	GT	./.
+NC_002945.4	3760339	.	N	.	.	.	.	GT	./.
+NC_002945.4	3761027	.	A	G	155.319	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=0;RO=0;RPL=4;RPP=6.91895;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:192:-17.6494,-1.50515,0
+NC_002945.4	3763303	.	G	A	123.56299999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:177:-16.2185,-1.80618,0
+NC_002945.4	3776764	.	A	G	219.312	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:261:-23.8425,-2.10721,0
+NC_002945.4	3777157	.	A	G	121.141	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.75;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:149:-13.7442,-1.20412,0
+NC_002945.4	3777199	.	T	G	90.3549	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:116:-10.7905,-0.90309,0
+NC_002945.4	3777252	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777255	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777256	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777257	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777259	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777260	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777261	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777262	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777263	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777264	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777265	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777266	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777267	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777268	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777269	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777270	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777271	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777272	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777273	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777274	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777275	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777276	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777277	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777278	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777279	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777280	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777281	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777282	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777285	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777286	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777289	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777291	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777292	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777293	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777294	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777297	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777298	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777299	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777300	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777301	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777302	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777303	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777305	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777309	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777310	.	N	.	.	.	.	GT	./.
+NC_002945.4	3777311	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3778473	.	A	G	296.01599999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=3;SAP=6.48466;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:350:-31.8297,-3.0103,0
+NC_002945.4	3799828	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3892000	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3985299	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985300	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985301	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985302	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985303	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985304	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985305	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985306	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985307	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985308	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985309	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985310	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985311	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985312	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985313	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985314	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985315	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985316	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985317	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985318	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985319	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985320	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985321	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985322	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985323	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985324	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985325	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985326	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985327	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985328	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985329	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985330	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985331	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985332	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985333	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985334	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985335	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985336	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985337	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985338	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985339	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985340	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985341	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985342	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985343	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985344	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985345	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985346	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985347	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985348	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985349	.	N	.	.	.	.	GT	./.
+NC_002945.4	3985350	.	N	.	.	.	.	GT	./.
+NC_002945.4	3988787	.	C	G	167.105	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:203:-18.6008,-1.80618,0
+NC_002945.4	3995646	.	A	G	228.03599999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:280:-25.5319,-2.40824,0
+NC_002945.4	3996187	.	G	C	92.6057	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=2;RPP=3.73412;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:113:-10.5384,-0.90309,0
+NC_002945.4	4003460	.	G	A	308.175	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=0;RO=0;RPL=7;RPP=6.48466;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=6.48466;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:367:-33.3678,-3.0103,0
+NC_002945.4	4003907	.	G	A	388.065	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=4.51363;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:453:-41.093,-3.91339,0
+NC_002945.4	4003975	.	G	A	335.76800000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=7.94546;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=0;RO=0;RPL=9;RPP=12.6832;RPPR=0;RPR=2;RUN=1;SAF=8;SAP=7.94546;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:411:-37.3355,-3.31133,0
+NC_002945.4	4005190	.	C	T	201.65400000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:262:-23.8938,-2.40824,0
+NC_002945.4	4005223	.	T	C	217.963	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=14.8328;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:274:-24.9452,-2.70927,0
+NC_002945.4	4010760	.	T	C	272.608	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=14.8328;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=0;RO=0;RPL=3;RPP=5.18177;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:340:-30.9538,-2.70927,0
+NC_002945.4	4018300	.	T	C	163.39600000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=0;RO=0;RPL=1;RPP=8.80089;RPPR=0;RPR=5;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:202:-18.5029,-1.80618,0
+NC_002945.4	4027025	.	G	A	242.857	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=4.09604;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=13.9707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=13;RO=1;RPL=1;RPP=12.7819;RPPR=5.18177;RPR=7;RUN=1;SAF=2;SAP=7.35324;SAR=6;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:1,8:1:13:8:305:-26.5089,-1.40928,0
+NC_002945.4	4030204	.	G	C	375.81	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:443:-40.2112,-3.61236,0
+NC_002945.4	4032459	.	G	A	177.41400000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=4;RPP=4.45795;RPPR=0;RPR=2;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:223:-20.4276,-1.80618,0
+NC_002945.4	4032905	.	G	A	284.058	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:340:-30.9526,-2.70927,0
+NC_002945.4	4035697	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035698	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035699	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035700	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035701	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035702	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035703	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035704	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035705	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035706	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035707	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035708	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035709	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035710	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035711	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035712	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035713	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035714	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035715	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035716	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035717	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035718	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035719	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035720	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035721	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035722	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035723	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035724	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035725	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035726	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035727	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035728	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035729	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035730	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035731	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035732	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035733	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035734	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035735	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035736	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035737	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035738	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035739	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035740	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035741	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035742	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035743	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035744	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035745	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035746	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035747	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035748	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035749	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035750	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035751	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035752	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035753	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035754	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035755	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035756	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035757	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035758	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035759	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035760	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035761	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035762	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035763	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035764	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035765	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035766	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035767	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035768	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035769	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035770	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035771	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035772	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035773	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035774	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035775	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035776	.	N	.	.	.	.	GT	./.
+NC_002945.4	4035777	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4036105	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036106	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036107	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036108	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036109	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036110	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036111	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036112	.	N	.	.	.	.	GT	./.
+NC_002945.4	4038344	.	A	G	149.827	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:186:-17.1003,-1.50515,0
+NC_002945.4	4043457	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043458	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043459	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043460	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043461	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043462	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043463	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043464	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043465	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043466	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043467	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043468	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043469	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043470	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043471	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043472	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043473	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043474	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043475	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043476	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043477	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043478	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043479	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043480	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043481	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043482	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043752	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043753	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043754	.	N	.	.	.	.	GT	./.
+NC_002945.4	4043755	.	N	.	.	.	.	GT	./.
+NC_002945.4	4047492	.	C	T	395.551	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:462:-41.8838,-4.21442,0
+NC_002945.4	4049163	.	A	T	225.99599999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=0;RO=0;RPL=2;RPP=5.80219;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:276:-25.2099,-2.10721,0
+NC_002945.4	4049732	.	A	G	377.273	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=11.1951;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:447:-40.5421,-3.91339,0
+NC_002945.4	4054200	.	A	G	214.805	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:256:-23.3918,-2.10721,0
+NC_002945.4	4054781	.	T	G	325.46299999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=0;RO=0;RPL=7;RPP=6.48466;RPPR=0;RPR=3;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:386:-35.0966,-3.0103,0
+NC_002945.4	4058376	.	T	C	385.856	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=0;RO=0;RPL=3;RPP=11.1951;RPPR=0;RPR=10;RUN=1;SAF=8;SAP=4.51363;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:462:-41.9055,-3.91339,0
+NC_002945.4	4058768	.	G	A	207.433	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:248:-22.6546,-2.10721,0
+NC_002945.4	4070140	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070141	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070142	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070143	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070820	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070821	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070822	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070823	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070824	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070825	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070826	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070827	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070828	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070829	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070830	.	N	.	.	.	.	GT	./.
+NC_002945.4	4070831	.	N	.	.	.	.	GT	./.
+NC_002945.4	4077189	.	T	C	375.458	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:438:-39.757,-3.61236,0
+NC_002945.4	4080736	.	G	C	178.05700000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=0;RO=0;RPL=2;RPP=4.45795;RPPR=0;RPR=4;RUN=1;SAF=1;SAP=8.80089;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:218:-19.969,-1.80618,0
+NC_002945.4	4082005	.	A	G	237.78	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=0;RO=0;RPL=6;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2633,-2.40824,0
+NC_002945.4	4082258	.	C	A	159.179	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=8.80089;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.7802,-1.80618,0
+NC_002945.4	4083115	.	T	C	313.807	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=0;RO=0;RPL=7;RPP=4.78696;RPPR=0;RPR=4;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:370:-33.6131,-3.31133,0
+NC_002945.4	4093477	.	C	T	290.029	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=2;SAP=10.8276;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:349:-31.7362,-3.0103,0
+NC_002945.4	4096612	.	T	G	450.015	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=0;RO=0;RPL=10;RPP=8.59409;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:530:-48.0414,-4.21442,0
+NC_002945.4	4098781	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098782	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098783	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098784	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098785	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098786	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098787	.	N	.	.	.	.	GT	./.
+NC_002945.4	4098788	.	N	.	.	.	.	GT	./.
+NC_002945.4	4109061	.	G	A	121.37	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=4;RPP=6.91895;RPPR=0;RPR=1;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:155:-14.2545,-1.50515,0
+NC_002945.4	4128731	.	G	A	276.798	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=2;SAP=9.04217;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:332:-30.2266,-2.70927,0
+NC_002945.4	4130927	.	A	C	250.15200000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:295:-26.8984,-2.40824,0
+NC_002945.4	4141983	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141984	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141985	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141986	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141987	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141988	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141989	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141990	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141991	.	N	.	.	.	.	GT	./.
+NC_002945.4	4141992	.	N	.	.	.	.	GT	./.
+NC_002945.4	4149101	.	C	A	378.657	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:443:-40.2107,-3.61236,0
+NC_002945.4	4162554	.	T	C	151.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=0;RO=0;RPL=2;RPP=3.44459;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:188:-17.2835,-1.50515,0
+NC_002945.4	4162931	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162932	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162933	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162934	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162935	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162936	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162937	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162938	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162939	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162940	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162941	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162942	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162943	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162944	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162945	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162946	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162947	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162948	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162949	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162950	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162951	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162952	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162953	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162954	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162955	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162956	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162957	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162958	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162959	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162960	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162961	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162962	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162963	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162964	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162965	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162966	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162967	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162968	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162969	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162970	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162971	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162972	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162973	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162974	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162975	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162976	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162977	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162978	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162979	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162980	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162981	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162982	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162983	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162984	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162985	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162986	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162987	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162988	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162989	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162990	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162991	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162992	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162993	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162994	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162995	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162996	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162997	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162998	.	N	.	.	.	.	GT	./.
+NC_002945.4	4162999	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163000	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163001	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163002	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163003	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163004	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163005	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163006	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163007	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163008	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163009	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163010	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163011	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163012	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163013	.	N	.	.	.	.	GT	./.
+NC_002945.4	4163014	.	N	.	.	.	.	GT	./.
+NC_002945.4	4179050	.	C	A	190.14	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=3.32051;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:229:-20.9252,-2.10721,0
+NC_002945.4	4180986	.	A	G	382.274	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:447:-40.5724,-3.61236,0
+NC_002945.4	4182736	.	C	T	250.795	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=12.7819;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:305:-27.8078,-2.40824,0
+NC_002945.4	4185504	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185505	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185506	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185507	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185508	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185509	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185510	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185511	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185512	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185513	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185514	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185515	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185516	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185517	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185518	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185519	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185520	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185521	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185522	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185523	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185524	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185525	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185526	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185527	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185528	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185529	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185530	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185531	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185532	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185533	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185534	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185535	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185536	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185537	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185538	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185539	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185540	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185541	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185542	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185543	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185544	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185545	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185546	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185547	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185548	.	N	.	.	.	.	GT	./.
+NC_002945.4	4185549	.	N	.	.	.	.	GT	./.
+NC_002945.4	4187880	.	G	A	517.493	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=0;RO=0;RPL=10;RPP=4.1599;RPPR=0;RPR=7;RUN=1;SAF=9;SAP=3.13803;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:597:-54.0414,-5.11751,0
+NC_002945.4	4199883	.	C	T	165.35299999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=3;RPP=3.0103;RPPR=0;RPR=3;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,6:0:0:6:206:-18.6985,-1.80618,0
+NC_002945.4	4203638	.	C	T	301.935	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:353:-32.0993,-3.0103,0
+NC_002945.4	4206737	.	N	.	.	.	.	GT	./.
+NC_002945.4	4206738	.	N	.	.	.	.	GT	./.
+NC_002945.4	4206739	.	N	.	.	.	.	GT	./.
+NC_002945.4	4206740	.	N	.	.	.	.	GT	./.
+NC_002945.4	4206741	.	N	.	.	.	.	GT	./.
+NC_002945.4	4206742	.	N	.	.	.	.	GT	./.
+NC_002945.4	4210374	.	C	T	348.588	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=0;RO=0;RPL=2;RPP=14.5915;RPPR=0;RPR=10;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:424:-38.4871,-3.61236,0
+NC_002945.4	4214259	.	G	T	327.262	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=0;RO=0;RPL=3;RPP=6.48466;RPPR=0;RPR=7;RUN=1;SAF=3;SAP=6.48466;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:388:-35.2766,-3.0103,0
+NC_002945.4	4219009	.	C	G	138.148	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:170:-15.6313,-1.50515,0
+NC_002945.4	4222196	.	A	G	406.64300000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=9;SAP=7.18621;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:475:-43.0812,-3.91339,0
+NC_002945.4	4227772	.	N	.	.	.	.	GT	./.
+NC_002945.4	4234942	.	T	C	333.485	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=4.78696;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:390:-35.4346,-3.31133,0
+NC_002945.4	4237805	.	A	C	158.594	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:189:-17.3749,-1.50515,0
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+NC_002945.4	4310280	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310281	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310282	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310283	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310284	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310285	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310286	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310287	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310288	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310289	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310290	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310291	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310292	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310293	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310294	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310295	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310296	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310297	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310298	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310299	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310300	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310301	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310302	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310303	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310304	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310305	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310306	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310307	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310308	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310309	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310310	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310311	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310312	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310313	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310314	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310315	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310316	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310317	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310318	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310319	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310320	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310321	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310322	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310323	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310324	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310325	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310326	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310327	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310328	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310329	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310330	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310331	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310332	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310333	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310334	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310335	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310336	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310337	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310338	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310339	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310340	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310341	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310342	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310343	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310344	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310345	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310346	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310347	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310348	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310349	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310350	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310351	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310352	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310353	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310354	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310355	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310356	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310357	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310358	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310359	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310360	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310361	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310362	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310363	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310364	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310365	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310366	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310367	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310368	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310369	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310370	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310371	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310372	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310373	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310374	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310375	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310376	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310377	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310378	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310379	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310380	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310381	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310382	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310383	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310384	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310385	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310386	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310387	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310388	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310389	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310390	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310391	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310392	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310393	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310509	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310510	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310511	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310512	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310513	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310514	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310515	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310516	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310517	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310518	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310519	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310520	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310521	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310522	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310523	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310524	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310525	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310526	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310527	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310528	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310529	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310530	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310531	.	N	.	.	.	.	GT	./.
+NC_002945.4	4310532	.	N	.	.	.	.	GT	./.
+NC_002945.4	4311425	.	C	T	299.178	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=6.48466;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=0;RO=0;RPL=7;RPP=6.48466;RPPR=0;RPR=3;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:357:-32.4681,-3.0103,0
+NC_002945.4	4313435	.	C	T	202.255	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:249:-22.7108,-2.40824,0
+NC_002945.4	4317284	.	G	A	179.903	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=4.45795;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=0;RO=0;RPL=5;RPP=8.80089;RPPR=0;RPR=1;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:220:-20.1536,-1.80618,0
+NC_002945.4	4321302	.	A	C	177.84	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=0;RO=0;RPL=4;RPP=3.32051;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:230:-21.0175,-2.10721,0
+NC_002945.4	4321337	.	T	C	199.597	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=0;RO=0;RPL=6;RPP=10.7656;RPPR=0;RPR=1;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:247:-22.57,-2.10721,0
+NC_002945.4	4321820	.	G	A	167.732	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=3;RPP=3.0103;RPPR=0;RPR=3;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:201:-18.4135,-1.80618,0
+NC_002945.4	4324793	.	N	.	.	.	.	GT	./.
+NC_002945.4	4324794	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329126	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329127	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329128	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329129	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329130	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329131	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329132	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329133	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329134	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329135	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329136	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329137	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329138	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329139	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329140	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329141	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329142	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329143	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329144	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329145	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329146	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329147	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329148	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329149	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329150	.	N	.	.	.	.	GT	./.
+NC_002945.4	4329151	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4339520	.	C	T	226.717	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=0;RO=0;RPL=5;RPP=3.25157;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:269:-24.4984,-2.70927,0
+NC_002945.4	4341572	.	T	C	108.113	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=0;RO=0;RPL=1;RPP=5.18177;RPPR=0;RPR=3;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:143:-13.2195,-1.20412,0
+NC_002945.4	4347891	.	G	A	377.727	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:442:-40.1177,-3.61236,0
+NC_002945.4	4348880	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348881	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348882	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348883	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348884	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348885	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348886	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348887	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348888	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348889	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348890	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348891	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348892	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348893	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348894	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348895	.	N	.	.	.	.	GT	./.
+NC_002945.4	4348896	.	N	.	.	.	.	GT	./.
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/BCG_Tokyo_Unknown_JP_DRR029468.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/BCG_Tokyo_Unknown_JP_DRR029468.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,26750 @@
+##fileformat=VCFv4.2
+##fileDate=20201215
+##source=freeBayes v1.3.1-dirty
+##reference=/home/galaxy/galaxy/tool-data/AF2122/sam_indexes/AF2122/AF2122.fa
+##contig=<ID=NC_002945.4,length=4349904>
+##phasing=none
+##commandline="freebayes --region NC_002945.4:0..4349904 --bam b_0.bam --fasta-reference /home/galaxy/galaxy/tool-data/AF2122/sam_indexes/AF2122/AF2122.fa --vcf ./vcf_output/part_NC_002945.4:0..4349904.vcf -u -n 0 --haplotype-length -1 --min-repeat-size 5 --min-repeat-entropy 1 -m 1 -q 0 -R 0 -Y 0 -e 1 -F 0.05 -C 2 -G 1 --min-alternate-qsum 0"
+##filter="QUAL > 20"
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
+##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
+##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
+##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
+##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
+##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
+##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
+##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
+##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
+##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
+##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
+##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
+##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
+##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
+##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
+##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
+##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
+##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
+##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
+##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
+##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
+##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
+##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
+##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
+##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
+##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
+##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
+##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
+##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
+##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
+##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
+##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
+##INFO=<ID=technology.ILLUMINA,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from ILLUMINA">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
+##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
+##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
+##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
+##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
+##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BCG_Tokyo_Unknown_JP_DRR029468
+NC_002945.4	1057	.	A	G	388.64300000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:451:-40.9382,-3.61236,0
+NC_002945.4	4480	.	T	C	257.447	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:303:-27.6279,-2.40824,0
+NC_002945.4	8624	.	G	T	355.855	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=0;RO=0;RPL=8;RPP=7.94546;RPPR=0;RPR=3;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:418:-37.9727,-3.31133,0
+NC_002945.4	9217	.	C	A	443.80400000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=0;RO=0;RPL=8;RPP=3.63072;RPPR=0;RPR=6;RUN=1;SAF=11;SAP=12.937;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:526:-47.6835,-4.21442,0
+NC_002945.4	10727	.	G	A	569.394	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=4.9405;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=0;RO=0;RPL=10;RPP=3.49285;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=3.0103;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:656:-59.3644,-5.41854,0
+NC_002945.4	17856	.	C	T	249.262	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:294:-26.8094,-2.40824,0
+NC_002945.4	24678	.	G	A	555.475	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=0;RO=0;RPL=10;RPP=4.1599;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=4.1599;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:640:-57.9365,-5.11751,0
+NC_002945.4	25287	.	G	C	398.574	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:462:-41.9314,-3.61236,0
+NC_002945.4	27695	.	C	T	379.319	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:453:-41.1185,-3.61236,0
+NC_002945.4	33788	.	A	G	356.88199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=11;SAP=21.1059;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:439:-39.8528,-3.61236,0
+NC_002945.4	35326	.	C	T	596.929	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=0;RO=0;RPL=11;RPP=4.9405;RPPR=0;RPR=7;RUN=1;SAF=13;SAP=10.7311;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:699:-63.2442,-5.41854,0
+NC_002945.4	39077	.	G	A	359.76099999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:419:-38.0623,-3.31133,0
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+NC_002945.4	104243	.	N	.	.	.	.	GT	./.
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+NC_002945.4	104246	.	N	.	.	.	.	GT	./.
+NC_002945.4	104247	.	N	.	.	.	.	GT	./.
+NC_002945.4	104248	.	N	.	.	.	.	GT	./.
+NC_002945.4	104249	.	N	.	.	.	.	GT	./.
+NC_002945.4	104250	.	N	.	.	.	.	GT	./.
+NC_002945.4	104251	.	N	.	.	.	.	GT	./.
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+NC_002945.4	104259	.	N	.	.	.	.	GT	./.
+NC_002945.4	104260	.	N	.	.	.	.	GT	./.
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+NC_002945.4	104264	.	N	.	.	.	.	GT	./.
+NC_002945.4	104265	.	N	.	.	.	.	GT	./.
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+NC_002945.4	375693	.	N	.	.	.	.	GT	./.
+NC_002945.4	375694	.	N	.	.	.	.	GT	./.
+NC_002945.4	375695	.	N	.	.	.	.	GT	./.
+NC_002945.4	375696	.	N	.	.	.	.	GT	./.
+NC_002945.4	375697	.	N	.	.	.	.	GT	./.
+NC_002945.4	375698	.	N	.	.	.	.	GT	./.
+NC_002945.4	375699	.	N	.	.	.	.	GT	./.
+NC_002945.4	375700	.	N	.	.	.	.	GT	./.
+NC_002945.4	375701	.	N	.	.	.	.	GT	./.
+NC_002945.4	375702	.	N	.	.	.	.	GT	./.
+NC_002945.4	375703	.	N	.	.	.	.	GT	./.
+NC_002945.4	375704	.	N	.	.	.	.	GT	./.
+NC_002945.4	375705	.	N	.	.	.	.	GT	./.
+NC_002945.4	375706	.	N	.	.	.	.	GT	./.
+NC_002945.4	375707	.	N	.	.	.	.	GT	./.
+NC_002945.4	375708	.	N	.	.	.	.	GT	./.
+NC_002945.4	375709	.	N	.	.	.	.	GT	./.
+NC_002945.4	375710	.	N	.	.	.	.	GT	./.
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+NC_002945.4	375713	.	N	.	.	.	.	GT	./.
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+NC_002945.4	425071	.	N	.	.	.	.	GT	./.
+NC_002945.4	425072	.	N	.	.	.	.	GT	./.
+NC_002945.4	425073	.	N	.	.	.	.	GT	./.
+NC_002945.4	425074	.	N	.	.	.	.	GT	./.
+NC_002945.4	425075	.	N	.	.	.	.	GT	./.
+NC_002945.4	425076	.	N	.	.	.	.	GT	./.
+NC_002945.4	425077	.	N	.	.	.	.	GT	./.
+NC_002945.4	425078	.	N	.	.	.	.	GT	./.
+NC_002945.4	425079	.	N	.	.	.	.	GT	./.
+NC_002945.4	425080	.	N	.	.	.	.	GT	./.
+NC_002945.4	425081	.	N	.	.	.	.	GT	./.
+NC_002945.4	425082	.	N	.	.	.	.	GT	./.
+NC_002945.4	425083	.	N	.	.	.	.	GT	./.
+NC_002945.4	425084	.	N	.	.	.	.	GT	./.
+NC_002945.4	425085	.	N	.	.	.	.	GT	./.
+NC_002945.4	425086	.	N	.	.	.	.	GT	./.
+NC_002945.4	425087	.	N	.	.	.	.	GT	./.
+NC_002945.4	425088	.	N	.	.	.	.	GT	./.
+NC_002945.4	425089	.	N	.	.	.	.	GT	./.
+NC_002945.4	425090	.	N	.	.	.	.	GT	./.
+NC_002945.4	425091	.	N	.	.	.	.	GT	./.
+NC_002945.4	425092	.	N	.	.	.	.	GT	./.
+NC_002945.4	425093	.	N	.	.	.	.	GT	./.
+NC_002945.4	425094	.	N	.	.	.	.	GT	./.
+NC_002945.4	425095	.	N	.	.	.	.	GT	./.
+NC_002945.4	425096	.	N	.	.	.	.	GT	./.
+NC_002945.4	425097	.	N	.	.	.	.	GT	./.
+NC_002945.4	425098	.	N	.	.	.	.	GT	./.
+NC_002945.4	425099	.	N	.	.	.	.	GT	./.
+NC_002945.4	425100	.	N	.	.	.	.	GT	./.
+NC_002945.4	425101	.	N	.	.	.	.	GT	./.
+NC_002945.4	425102	.	N	.	.	.	.	GT	./.
+NC_002945.4	425103	.	N	.	.	.	.	GT	./.
+NC_002945.4	425104	.	N	.	.	.	.	GT	./.
+NC_002945.4	425105	.	N	.	.	.	.	GT	./.
+NC_002945.4	425106	.	N	.	.	.	.	GT	./.
+NC_002945.4	425107	.	N	.	.	.	.	GT	./.
+NC_002945.4	425108	.	N	.	.	.	.	GT	./.
+NC_002945.4	425109	.	N	.	.	.	.	GT	./.
+NC_002945.4	425110	.	N	.	.	.	.	GT	./.
+NC_002945.4	425111	.	N	.	.	.	.	GT	./.
+NC_002945.4	425112	.	N	.	.	.	.	GT	./.
+NC_002945.4	425113	.	N	.	.	.	.	GT	./.
+NC_002945.4	425114	.	N	.	.	.	.	GT	./.
+NC_002945.4	425115	.	N	.	.	.	.	GT	./.
+NC_002945.4	425116	.	N	.	.	.	.	GT	./.
+NC_002945.4	425117	.	N	.	.	.	.	GT	./.
+NC_002945.4	425118	.	N	.	.	.	.	GT	./.
+NC_002945.4	425119	.	N	.	.	.	.	GT	./.
+NC_002945.4	425120	.	N	.	.	.	.	GT	./.
+NC_002945.4	425121	.	N	.	.	.	.	GT	./.
+NC_002945.4	425122	.	N	.	.	.	.	GT	./.
+NC_002945.4	425123	.	N	.	.	.	.	GT	./.
+NC_002945.4	425124	.	N	.	.	.	.	GT	./.
+NC_002945.4	425125	.	N	.	.	.	.	GT	./.
+NC_002945.4	425126	.	N	.	.	.	.	GT	./.
+NC_002945.4	425127	.	N	.	.	.	.	GT	./.
+NC_002945.4	425128	.	N	.	.	.	.	GT	./.
+NC_002945.4	425129	.	N	.	.	.	.	GT	./.
+NC_002945.4	425130	.	N	.	.	.	.	GT	./.
+NC_002945.4	425131	.	N	.	.	.	.	GT	./.
+NC_002945.4	425132	.	N	.	.	.	.	GT	./.
+NC_002945.4	425133	.	N	.	.	.	.	GT	./.
+NC_002945.4	425134	.	N	.	.	.	.	GT	./.
+NC_002945.4	425135	.	N	.	.	.	.	GT	./.
+NC_002945.4	425136	.	N	.	.	.	.	GT	./.
+NC_002945.4	425137	.	N	.	.	.	.	GT	./.
+NC_002945.4	425138	.	N	.	.	.	.	GT	./.
+NC_002945.4	425139	.	N	.	.	.	.	GT	./.
+NC_002945.4	425140	.	N	.	.	.	.	GT	./.
+NC_002945.4	425141	.	N	.	.	.	.	GT	./.
+NC_002945.4	425142	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581913	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581917	.	N	.	.	.	.	GT	./.
+NC_002945.4	581918	.	N	.	.	.	.	GT	./.
+NC_002945.4	581919	.	N	.	.	.	.	GT	./.
+NC_002945.4	581920	.	N	.	.	.	.	GT	./.
+NC_002945.4	581921	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581923	.	N	.	.	.	.	GT	./.
+NC_002945.4	581924	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581929	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581934	.	N	.	.	.	.	GT	./.
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+NC_002945.4	581937	.	N	.	.	.	.	GT	./.
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+NC_002945.4	842369	.	N	.	.	.	.	GT	./.
+NC_002945.4	842370	.	N	.	.	.	.	GT	./.
+NC_002945.4	842371	.	N	.	.	.	.	GT	./.
+NC_002945.4	842372	.	N	.	.	.	.	GT	./.
+NC_002945.4	842373	.	N	.	.	.	.	GT	./.
+NC_002945.4	842374	.	N	.	.	.	.	GT	./.
+NC_002945.4	842375	.	N	.	.	.	.	GT	./.
+NC_002945.4	842376	.	N	.	.	.	.	GT	./.
+NC_002945.4	842377	.	N	.	.	.	.	GT	./.
+NC_002945.4	842378	.	N	.	.	.	.	GT	./.
+NC_002945.4	842379	.	N	.	.	.	.	GT	./.
+NC_002945.4	842380	.	N	.	.	.	.	GT	./.
+NC_002945.4	842381	.	N	.	.	.	.	GT	./.
+NC_002945.4	842382	.	N	.	.	.	.	GT	./.
+NC_002945.4	842383	.	N	.	.	.	.	GT	./.
+NC_002945.4	842384	.	N	.	.	.	.	GT	./.
+NC_002945.4	842385	.	N	.	.	.	.	GT	./.
+NC_002945.4	842386	.	N	.	.	.	.	GT	./.
+NC_002945.4	842387	.	N	.	.	.	.	GT	./.
+NC_002945.4	842388	.	N	.	.	.	.	GT	./.
+NC_002945.4	842389	.	N	.	.	.	.	GT	./.
+NC_002945.4	842390	.	N	.	.	.	.	GT	./.
+NC_002945.4	842391	.	N	.	.	.	.	GT	./.
+NC_002945.4	842392	.	N	.	.	.	.	GT	./.
+NC_002945.4	842393	.	N	.	.	.	.	GT	./.
+NC_002945.4	842394	.	N	.	.	.	.	GT	./.
+NC_002945.4	842395	.	N	.	.	.	.	GT	./.
+NC_002945.4	842396	.	N	.	.	.	.	GT	./.
+NC_002945.4	842397	.	N	.	.	.	.	GT	./.
+NC_002945.4	842398	.	N	.	.	.	.	GT	./.
+NC_002945.4	842399	.	N	.	.	.	.	GT	./.
+NC_002945.4	842400	.	N	.	.	.	.	GT	./.
+NC_002945.4	842401	.	N	.	.	.	.	GT	./.
+NC_002945.4	842402	.	N	.	.	.	.	GT	./.
+NC_002945.4	842403	.	N	.	.	.	.	GT	./.
+NC_002945.4	843684	.	C	G	224.326	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.1429;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:272:-24.5658,-2.10721,0
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+NC_002945.4	861205	.	N	.	.	.	.	GT	./.
+NC_002945.4	865821	.	G	T	319.803	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:380:-34.5551,-3.0103,0
+NC_002945.4	866706	.	C	T	553.985	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=9.26925;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=0;RO=0;RPL=8;RPP=3.13803;RPPR=0;RPR=9;RUN=1;SAF=4;SAP=13.3567;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:654:-59.1971,-5.11751,0
+NC_002945.4	870116	.	G	T	388.156	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=0;RO=0;RPL=4;RPP=5.9056;RPPR=0;RPR=8;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:452:-41.0268,-3.61236,0
+NC_002945.4	874620	.	A	G	437.26300000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=0;RO=0;RPL=6;RPP=3.63072;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:508:-46.055,-4.21442,0
+NC_002945.4	905912	.	C	G	509.92699999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.55317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=12;RUN=1;SAF=9;SAP=3.55317;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:597:-54.0652,-4.81648,0
+NC_002945.4	917259	.	C	A	346.79	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=14.5915;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:419:-38.0363,-3.61236,0
+NC_002945.4	920661	.	T	C	564.896	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=3.49285;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=0;RO=0;RPL=9;RPP=3.0103;RPPR=0;RPR=9;RUN=1;SAF=7;SAP=4.9405;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:651:-58.9146,-5.41854,0
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+NC_002945.4	941068	.	A	C	536.207	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=7;SAP=3.55317;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:619:-56.0498,-4.81648,0
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+NC_002945.4	1192625	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192646	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192647	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192648	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192651	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192652	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192653	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192654	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192655	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192656	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192657	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192658	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192660	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192661	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192664	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192665	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192667	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192668	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192669	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192670	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1192672	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192673	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192674	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192675	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192676	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192677	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192678	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192679	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192680	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192681	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192682	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192683	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192684	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192685	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192686	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192687	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192688	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192689	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192690	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192691	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192692	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192693	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192694	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192695	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192696	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192697	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192698	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192699	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192700	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192701	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192702	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192703	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192704	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192705	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192706	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192707	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192708	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192709	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192710	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192711	.	N	.	.	.	.	GT	./.
+NC_002945.4	1192712	.	N	.	.	.	.	GT	./.
+NC_002945.4	1194220	.	G	A	459.5	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=8;SAP=3.63072;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:530:-48.0446,-4.21442,0
+NC_002945.4	1197896	.	C	T	562.434	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=15.074;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=660;QR=0;RO=0;RPL=10;RPP=3.49285;RPPR=0;RPR=8;RUN=1;SAF=10;SAP=3.49285;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:660:-59.7312,-5.41854,0
+NC_002945.4	1199529	.	G	A	279.497	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:333:-30.3204,-2.70927,0
+NC_002945.4	1199530	.	A	C	278.587	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:332:-30.2295,-2.70927,0
+NC_002945.4	1206896	.	A	G	414.71	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=0;RO=0;RPL=8;RPP=4.51363;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:481:-43.6325,-3.91339,0
+NC_002945.4	1214540	.	T	C	238.792	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=16.9077;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:301:-27.1864,-3.0103,0
+NC_002945.4	1214767	.	C	T	45.8051	.	AB=0.352941;ABP=6.20364;AC=1;AF=0.5;AN=2;AO=6;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=8.80089;EPPR=4.78696;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.1818;NS=1;NUMALT=1;ODDS=10.547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=376;RO=11;RPL=6;RPP=16.0391;RPPR=26.8965;RPR=0;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=4;SRP=4.78696;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:11,6:11:376:6:181:-11.4677,0,-29.0193
+NC_002945.4	1214848	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214849	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214850	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214851	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214852	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214853	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214854	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214855	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214856	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214857	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214858	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214859	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214860	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214861	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214862	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214863	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214864	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214865	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214866	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214867	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214868	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214869	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214870	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214871	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214873	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214874	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214875	.	N	.	.	.	.	GT	./.
+NC_002945.4	1214876	.	N	.	.	.	.	GT	./.
+NC_002945.4	1216485	.	C	A	409.037	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=0;RO=0;RPL=9;RPP=7.18621;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=7.18621;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:486:-44.0809,-3.91339,0
+NC_002945.4	1230143	.	A	C	504.925	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=11;SAP=7.89611;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:589:-53.3397,-4.81648,0
+NC_002945.4	1230875	.	G	T	328.283	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=0;RO=0;RPL=5;RPP=3.0103;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=3.87889;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:382:-34.7342,-3.0103,0
+NC_002945.4	1237056	.	C	T	449.296	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:524:-47.5013,-4.21442,0
+NC_002945.4	1244746	.	G	C	511.99	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=0;RO=0;RPL=6;RPP=5.18177;RPPR=0;RPR=10;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:591:-53.5257,-4.81648,0
+NC_002945.4	1259250	.	T	C	394.964	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:458:-41.5704,-3.61236,0
+NC_002945.4	1277008	.	G	T	555.31	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=4.1599;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=0;RO=0;RPL=9;RPP=3.13803;RPPR=0;RPR=8;RUN=1;SAF=11;SAP=6.20364;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:642:-58.1163,-5.11751,0
+NC_002945.4	1277740	.	G	T	57.0913	.	AB=0.230769;ABP=19.3799;AC=1;AF=0.5;AN=2;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=4.45795;EPPR=4.74748;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=13.1458;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=710;RO=20;RPL=0;RPP=16.0391;RPPR=6.91895;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=11;SRP=3.44459;SRR=9;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:20,6:20:710:6:230:-13.2401,0,-56.3898
+NC_002945.4	1277805	.	G	A	167.303	.	AB=0.409091;ABP=4.58955;AC=1;AF=0.5;AN=2;AO=9;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=9.04217;EPPR=3.17734;GTI=0;LEN=1;MEANALT=1;MQM=51.8889;MQMR=60;NS=1;NUMALT=1;ODDS=38.5229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=493;RO=13;RPL=6;RPP=5.18177;RPPR=3.17734;RPR=3;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=7;SRP=3.17734;SRR=6;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:13,9:13:493:9:346:-22.2031,0,-38.0932
+NC_002945.4	1277832	.	C	T	199.453	.	AB=0.521739;ABP=3.10471;AC=1;AF=0.5;AN=2;AO=12;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=3.73412;EPPR=3.20771;GTI=0;LEN=1;MEANALT=1;MQM=42.6667;MQMR=60;NS=1;NUMALT=1;ODDS=45.9258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=421;RO=11;RPL=7;RPP=3.73412;RPPR=19.0002;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=7;SRP=4.78696;SRR=4;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:421:12:449:-24.812,0,-31.3197
+NC_002945.4	1278089	.	G	T	556.835	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=27;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=5.02092;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=1;NUMALT=1;ODDS=42.0351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=0;RO=0;RPL=5;RPP=26.2531;RPPR=0;RPR=22;RUN=1;SAF=19;SAP=12.7417;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:1021:-61.6983,-8.12781,0
+NC_002945.4	1283050	.	C	T	481.07300000000004	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=10.1038;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=0;RO=0;RPL=6;RPP=4.31318;RPPR=0;RPR=9;RUN=1;SAF=8;SAP=3.15506;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:563:-51.0106,-4.51545,0
+NC_002945.4	1284865	.	T	G	106.27799999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:141:-13.036,-1.20412,0
+NC_002945.4	1284872	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284873	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284874	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284875	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284876	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284877	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284878	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284879	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284880	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284881	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284882	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284883	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284884	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284885	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284886	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284887	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284888	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284889	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284890	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284891	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284892	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284893	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284894	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284895	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284896	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284897	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284898	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284899	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284900	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284901	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284902	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284903	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284904	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284905	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284906	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284907	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284908	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284909	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284910	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284911	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284912	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284913	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284914	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284915	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284916	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284917	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284918	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284919	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284920	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284921	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284922	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284923	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284924	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284925	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284926	.	N	.	.	.	.	GT	./.
+NC_002945.4	1284927	.	N	.	.	.	.	GT	./.
+NC_002945.4	1295798	.	T	C	625.1469999999999	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=4.03889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=0;RO=0;RPL=9;RPP=3.12459;RPPR=0;RPR=10;RUN=1;SAF=11;SAP=4.03889;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:718:-64.951,-5.71957,0
+NC_002945.4	1295859	.	G	C	657.663	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=4.74748;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=32.3311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=0;RO=0;RPL=11;RPP=3.44459;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=3.44459;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:755:-68.2774,-6.0206,0
+NC_002945.4	1306932	.	G	C	134.944	.	AB=0.4375;ABP=3.55317;AC=1;AF=0.5;AN=2;AO=7;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.32051;EPPR=3.25157;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=31.0719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=333;RO=9;RPL=7;RPP=18.2106;RPPR=14.8328;RPR=0;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=5;SRP=3.25157;SRR=4;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:333:7:266:-19.4859,0,-25.5051
+NC_002945.4	1319269	.	G	C	348.716	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=12.6832;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:417:-37.882,-3.31133,0
+NC_002945.4	1335092	.	T	C	348.885	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:407:-36.9747,-3.31133,0
+NC_002945.4	1339796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339805	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339806	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339807	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339808	.	N	.	.	.	.	GT	./.
+NC_002945.4	1339809	.	N	.	.	.	.	GT	./.
+NC_002945.4	1340109	.	C	A	201.141	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.32051;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=12.7022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=13;RO=1;RPL=4;RPP=3.32051;RPPR=5.18177;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:1,7:1:13:7:243:-20.9004,-1.10825,0
+NC_002945.4	1340710	.	G	C	74.2304	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:151:-9.47908,-1.20412,0
+NC_002945.4	1340713	.	T	G	75.9823	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:154:-9.65427,-1.20412,0
+NC_002945.4	1340714	.	C	A	75.0625	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:153:-9.56229,-1.20412,0
+NC_002945.4	1341272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341289	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341290	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341291	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341292	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341293	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341294	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341295	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341296	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341297	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341298	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341299	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341300	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341301	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341302	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341303	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341304	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341305	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341306	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341307	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341308	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341309	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341310	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341311	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341312	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341313	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341314	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341315	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341316	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341317	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341318	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341319	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341320	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341321	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341322	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341323	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341324	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341325	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341326	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341327	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341328	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341329	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341330	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341331	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341332	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341333	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341334	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341335	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341336	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341337	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341338	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341339	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341340	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341341	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341342	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341343	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341344	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341345	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341346	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341347	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341348	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341349	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341350	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341351	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341352	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341353	.	N	.	.	.	.	GT	./.
+NC_002945.4	1341401	.	A	G	197.21599999999998	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:298:-23.2561,-2.40824,0
+NC_002945.4	1341405	.	A	G	263.395	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:381:-30.5676,-3.0103,0
+NC_002945.4	1341588	.	A	C	224.545	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:306:-24.9398,-2.40824,0
+NC_002945.4	1341589	.	G	A	203.363	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=6;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:282:-22.8216,-2.40824,0
+NC_002945.4	1341592	.	C	A	260.632	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.1111;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=0;RO=0;RPL=2;RPP=9.04217;RPPR=0;RPR=7;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:345:-28.61,-2.70927,0
+NC_002945.4	1342105	.	A	G	69.3468	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.1429;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:262:-11.5661,-2.10721,0
+NC_002945.4	1343711	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343712	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343713	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343714	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343715	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343716	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343717	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343718	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343719	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343720	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343721	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343722	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1343764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1346016	.	G	A	400.35	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.17734;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.4518,-3.91339,0
+NC_002945.4	1347503	.	G	A	398.20300000000003	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=0;RO=0;RPL=12;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=6;SAP=5.18177;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:477:-43.2026,-4.81648,0
+NC_002945.4	1355918	.	A	C	646.898	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.2;MQMR=0;NS=1;NUMALT=1;ODDS=32.3311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=745;QR=0;RO=0;RPL=11;RPP=3.44459;RPPR=0;RPR=9;RUN=1;SAF=7;SAP=6.91895;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:745:-67.3704,-6.0206,0
+NC_002945.4	1362645	.	T	C	423.065	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=0;RO=0;RPL=6;RPP=3.63072;RPPR=0;RPR=8;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,14:0:0:14:500:-44.9942,-4.21442,0
+NC_002945.4	1364293	.	C	G	484.462	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=4.31318;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=0;RO=0;RPL=5;RPP=6.62942;RPPR=0;RPR=10;RUN=1;SAF=8;SAP=3.15506;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:563:-51.0071,-4.51545,0
+NC_002945.4	1366231	.	A	C	221.46200000000002	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=5.80219;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=0;RO=0;RPL=3;RPP=3.32051;RPPR=0;RPR=4;RUN=1;SAF=1;SAP=10.7656;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:271:-24.7564,-2.10721,0
+NC_002945.4	1372878	.	C	A	198.044	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=2;RPP=5.80219;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:257:-23.4816,-2.10721,0
+NC_002945.4	1383731	.	C	T	411.06199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:477:-43.2678,-3.91339,0
+NC_002945.4	1412824	.	T	C	403.505	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.6154;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:481:-42.7619,-3.91339,0
+NC_002945.4	1412828	.	T	A	327.664	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.6154;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=0;RO=0;RPL=5;RPP=4.51363;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:402:-35.1778,-3.91339,0
+NC_002945.4	1412893	.	T	A	212.892	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.8889;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=8;RPP=14.8328;RPPR=0;RPR=1;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:284:-24.262,-2.70927,0
+NC_002945.4	1414048	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414049	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414050	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414051	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414052	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414053	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414054	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414055	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414056	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414057	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414058	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414059	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414060	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414061	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414062	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414063	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414064	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414065	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414066	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414067	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414068	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414070	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414071	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414072	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414073	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414074	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414075	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414076	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414077	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414078	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414079	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414080	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414081	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414082	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414084	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414087	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414088	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414090	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414092	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414093	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414094	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414095	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414097	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414098	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414099	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414101	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414104	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414105	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414106	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414107	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414108	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414109	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414110	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414112	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414113	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414114	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414116	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414117	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414118	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414121	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414122	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414123	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414124	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414125	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414126	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414129	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414130	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414131	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414133	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414134	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414135	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414136	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414138	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414139	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414140	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414141	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414142	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414143	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414144	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414145	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414146	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414147	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414148	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414149	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414150	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414164	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1414166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1414167	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1417151	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417152	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417153	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417154	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417155	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417156	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417157	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417158	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417159	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417160	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417161	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417162	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417163	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417164	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417165	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417166	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417723	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417724	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417725	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417726	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417727	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417728	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417729	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417730	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417731	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417732	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417733	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417734	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417735	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417736	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417737	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417738	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417739	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417740	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417741	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417742	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417743	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417744	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417745	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417746	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417747	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417748	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417749	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417750	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417751	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417752	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417753	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417754	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417755	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417756	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417757	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417758	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417759	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417760	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417761	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417762	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417763	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417764	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417765	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417766	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417767	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417768	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417769	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417770	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417771	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417772	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417773	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417774	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417775	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417776	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417777	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417778	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417779	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417780	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417781	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417782	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417783	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417784	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417785	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417786	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417787	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417788	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417789	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417790	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417791	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417792	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417793	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417794	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417795	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417796	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417797	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417798	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417799	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417800	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417801	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417802	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417803	.	N	.	.	.	.	GT	./.
+NC_002945.4	1417804	.	N	.	.	.	.	GT	./.
+NC_002945.4	1421904	.	T	C	420.85400000000004	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=0;RO=0;RPL=7;RPP=3.17734;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:492:-44.6271,-3.91339,0
+NC_002945.4	1442194	.	T	G	463.452	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=10.1038;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=0;RO=0;RPL=8;RPP=3.15506;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=6.62942;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:546:-49.4703,-4.51545,0
+NC_002945.4	1442493	.	T	C	415.779	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=7.18621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:485:-43.9947,-3.91339,0
+NC_002945.4	1457665	.	C	G	509.043	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.55317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=4;SAP=11.6962;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:596:-53.9768,-4.81648,0
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+NC_002945.4	1481327	.	T	C	626.985	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=3.12459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=0;RO=0;RPL=11;RPP=4.03889;RPPR=0;RPR=8;RUN=1;SAF=12;SAP=5.8675;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:722:-65.3109,-5.71957,0
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+NC_002945.4	1535387	.	N	.	.	.	.	GT	./.
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+NC_002945.4	1778167	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778168	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778169	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778170	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778171	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778172	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778173	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778174	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778175	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778176	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778177	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778178	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778179	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778180	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778181	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778182	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778183	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778184	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778185	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778186	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778187	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778188	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778189	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778190	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778191	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778192	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778193	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778194	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778195	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778196	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778197	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778198	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778199	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778200	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778201	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778202	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778203	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778204	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778205	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778206	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778207	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778208	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778209	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778210	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778211	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778212	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778213	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778214	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778215	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778216	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778217	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778218	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778219	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778220	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778221	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778222	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778223	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778224	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778225	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778226	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778227	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778228	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778229	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778230	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778231	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778232	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778233	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778234	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778235	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778236	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778237	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778238	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778239	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778240	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778241	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778242	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778243	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778244	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778245	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778246	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778247	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778248	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778249	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778250	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778251	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778252	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778253	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778254	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778255	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778256	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778257	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778258	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778259	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778260	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778261	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778262	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778263	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778264	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778265	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778266	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778267	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778268	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778269	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778270	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778271	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778272	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778273	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778274	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778275	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778276	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778277	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778278	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778279	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778280	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778281	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778282	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778283	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778284	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778285	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778286	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778287	.	N	.	.	.	.	GT	./.
+NC_002945.4	1778288	.	N	.	.	.	.	GT	./.
+NC_002945.4	1784613	.	T	G	27.4411	.	AB=0.571429;ABP=3.63072;AC=1;AF=0.5;AN=2;AO=8;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=4.45795;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=6.31673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=218;RO=6;RPL=4;RPP=3.0103;RPPR=4.45795;RPR=4;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=16.0391;SRR=6;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:218:8:145:-9.01471,0,-15.7573
+NC_002945.4	1788345	.	C	A	357.79699999999997	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=8.59409;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=0;RO=0;RPL=2;RPP=18.5208;RPPR=0;RPR=12;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,14:0:0:14:449:-40.4631,-4.21442,0
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+NC_002945.4	1817079	.	C	T	459.474	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=0;RO=0;RPL=8;RPP=3.63072;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:530:-48.042,-4.21442,0
+NC_002945.4	1820059	.	G	A	448.629	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:518:-46.9575,-4.21442,0
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+NC_002945.4	2244283	.	N	.	.	.	.	GT	./.
+NC_002945.4	2244284	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246216	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246217	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246218	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246219	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246220	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246221	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246222	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246223	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246224	.	N	.	.	.	.	GT	./.
+NC_002945.4	2246225	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2283371	.	C	A	288.678	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=5;RPP=3.25157;RPPR=0;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:341:-31.0466,-2.70927,0
+NC_002945.4	2284747	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284748	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284749	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284750	.	N	.	.	.	.	GT	./.
+NC_002945.4	2284751	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2609510	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2609512	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609513	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609514	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609515	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609516	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609517	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609518	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609519	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609520	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609521	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609522	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609523	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609524	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609525	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609526	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609527	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609528	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609529	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609530	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609531	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609532	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609533	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609534	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609535	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609536	.	N	.	.	.	.	GT	./.
+NC_002945.4	2609537	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2611437	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611438	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611439	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611440	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611441	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611442	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611443	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611444	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611445	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611446	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611447	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611448	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611449	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611450	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611451	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611452	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611453	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611454	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611455	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611456	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611457	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611458	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611459	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611460	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611461	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611462	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611463	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611464	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611465	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611466	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611467	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611468	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611469	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611470	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611471	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611472	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611473	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611474	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611475	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611476	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611477	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611478	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611479	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611480	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611481	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611482	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611483	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611484	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611485	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611486	.	N	.	.	.	.	GT	./.
+NC_002945.4	2611487	.	N	.	.	.	.	GT	./.
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+NC_002945.4	2667489	.	T	C	663.061	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=11.386;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=33.7174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=0;RO=0;RPL=11;RPP=3.1137;RPPR=0;RPR=10;RUN=1;SAF=15;SAP=11.386;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:777:-70.2545,-6.32163,0
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+NC_002945.4	2687721	.	C	T	371.265	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=0;RO=0;RPL=5;RPP=3.73412;RPPR=0;RPR=7;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:438:-39.7567,-3.61236,0
+NC_002945.4	2689902	.	A	G	486.001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=3.15506;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=0;RO=0;RPL=7;RPP=3.15506;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=4.31318;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:561:-50.8299,-4.51545,0
+NC_002945.4	2701997	.	G	T	371.425	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:432:-39.2165,-3.61236,0
+NC_002945.4	2723330	.	G	A	506.542	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=0;RO=0;RPL=8;RPP=3.0103;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:585:-52.9809,-4.81648,0
+NC_002945.4	2725582	.	T	C	458.939	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:532:-48.2226,-4.21442,0
+NC_002945.4	2731377	.	C	G	538.238	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=13.3567;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=0;RO=0;RPL=7;RPP=4.1599;RPPR=0;RPR=10;RUN=1;SAF=9;SAP=3.13803;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:631:-57.125,-5.11751,0
+NC_002945.4	2732218	.	T	C	418.293	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=0;RO=0;RPL=4;RPP=7.18621;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=7.18621;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:492:-44.6263,-3.91339,0
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+NC_002945.4	2740416	.	C	T	517.863	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=7.89611;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=0;RO=0;RPL=7;RPP=3.55317;RPPR=0;RPR=9;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:601:-54.4275,-4.81648,0
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+NC_002945.4	3016073	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016166	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016167	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016171	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016175	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016180	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016181	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016182	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016183	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016184	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016185	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016186	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016187	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016188	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016189	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016190	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016191	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016192	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016193	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016194	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016195	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016196	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016197	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016198	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016199	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016200	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016201	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016202	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016203	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016204	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016205	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016206	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016207	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016208	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016209	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016210	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016211	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3016213	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016214	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016215	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016216	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016217	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016218	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016219	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016220	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016221	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016222	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016223	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016224	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016225	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016226	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016227	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016228	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016229	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016230	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016231	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016232	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016233	.	N	.	.	.	.	GT	./.
+NC_002945.4	3016234	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3040820	.	A	G	554.49	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=0;RO=0;RPL=11;RPP=6.20364;RPPR=0;RPR=6;RUN=1;SAF=9;SAP=3.13803;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:640:-57.9374,-5.11751,0
+NC_002945.4	3042914	.	T	G	482.22	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=10.1038;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=0;RO=0;RPL=4;RPP=10.1038;RPPR=0;RPR=11;RUN=1;SAF=4;SAP=10.1038;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:578:-52.3629,-4.51545,0
+NC_002945.4	3050324	.	G	A	298.932	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=16.9077;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=0;RO=0;RPL=2;RPP=10.8276;RPPR=0;RPR=8;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:376:-34.1917,-3.0103,0
+NC_002945.4	3053649	.	G	A	390.87199999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=0;RO=0;RPL=4;RPP=5.9056;RPPR=0;RPR=8;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:455:-41.2983,-3.61236,0
+NC_002945.4	3056303	.	A	C	326.882	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=0;RO=0;RPL=4;RPP=3.87889;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:384:-34.9163,-3.0103,0
+NC_002945.4	3062886	.	C	T	439.459	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=0;RO=0;RPL=5;RPP=5.49198;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:513:-46.5087,-4.21442,0
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+NC_002945.4	3070642	.	C	T	422.25199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=0;RO=0;RPL=6;RPP=3.63072;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:494:-44.7879,-4.21442,0
+NC_002945.4	3075667	.	T	C	518.364	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=3.13803;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=0;RO=0;RPL=10;RPP=4.1599;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=4.1599;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:599:-54.2254,-5.11751,0
+NC_002945.4	3080557	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080563	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080572	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080582	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3080588	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083743	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083750	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083751	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083752	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083753	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083754	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083756	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083757	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083758	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083759	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083761	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083762	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083763	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083764	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083765	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083766	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3083768	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083769	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083770	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083771	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083772	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083773	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083774	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083775	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083776	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083777	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083778	.	N	.	.	.	.	GT	./.
+NC_002945.4	3083779	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3097139	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097140	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097141	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097142	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097143	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097144	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097145	.	N	.	.	.	.	GT	./.
+NC_002945.4	3097146	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3124434	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124435	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124436	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124437	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124438	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124439	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124440	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124441	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124442	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124443	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124444	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124445	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124446	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124447	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124448	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124449	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124450	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124451	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124452	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124453	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124454	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124455	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124456	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124457	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124458	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124459	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124460	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124461	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124462	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124463	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124464	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124465	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124466	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124467	.	N	.	.	.	.	GT	./.
+NC_002945.4	3124468	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3140342	.	G	T	359.464	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=0;RO=0;RPL=3;RPP=7.94546;RPPR=0;RPR=8;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:422:-38.3336,-3.31133,0
+NC_002945.4	3141703	.	C	T	513.855	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=3.55317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=0;RO=0;RPL=9;RPP=3.55317;RPPR=0;RPR=7;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:592:-53.6085,-4.81648,0
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+NC_002945.4	3777243	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3777266	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3836491	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836492	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836493	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836494	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836495	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836496	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836497	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836498	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836499	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836500	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836501	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836502	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836503	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836504	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836505	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836506	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836507	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836508	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836509	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836510	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836511	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836512	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836513	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836514	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836515	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836516	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836517	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836518	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836519	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836520	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836521	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836522	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836523	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836524	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836525	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836526	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836527	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836528	.	N	.	.	.	.	GT	./.
+NC_002945.4	3836529	.	N	.	.	.	.	GT	./.
+NC_002945.4	3838435	.	T	C	477.385	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=3.15506;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=0;RO=0;RPL=3;RPP=14.7363;RPPR=0;RPR=12;RUN=1;SAF=8;SAP=3.15506;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:563:-51.0097,-4.51545,0
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+NC_002945.4	3845613	.	G	C	34.2388	.	AB=0.227273;ABP=17.2236;AC=1;AF=0.5;AN=2;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=6.91895;EPPR=9.26925;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=60;NS=1;NUMALT=1;ODDS=7.88339;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=639;RO=17;RPL=0;RPP=13.8677;RPPR=3.13803;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=10;SRP=4.1599;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:639:5:189:-10.7434,0,-51.2236
+NC_002945.4	3845623	.	G	C	28.7418	.	AB=0.227273;ABP=17.2236;AC=1;AF=0.5;AN=2;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=6.91895;EPPR=9.26925;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=60;NS=1;NUMALT=1;ODDS=6.6167;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=633;RO=17;RPL=0;RPP=13.8677;RPPR=3.13803;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=10;SRP=4.1599;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:633:5:183:-10.1932,0,-50.682
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+NC_002945.4	3849826	.	C	T	526.798	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=0;RO=0;RPL=6;RPP=5.18177;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=5.18177;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:612:-55.4187,-4.81648,0
+NC_002945.4	3857532	.	G	A	404.504	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=3.17734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=3;SAP=11.1951;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:477:-43.2652,-3.91339,0
+NC_002945.4	3866857	.	T	G	657.775	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=32.3311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=0;RO=0;RPL=10;RPP=3.0103;RPPR=0;RPR=10;RUN=1;SAF=7;SAP=6.91895;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:757:-68.458,-6.0206,0
+NC_002945.4	3868364	.	G	A	328.691	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=3.87889;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.4681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=0;RO=0;RPL=3;RPP=6.48466;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:386:-35.0972,-3.0103,0
+NC_002945.4	3871540	.	G	C	349.524	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=5.9056;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=0;RO=0;RPL=10;RPP=14.5915;RPPR=0;RPR=2;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:425:-38.5807,-3.61236,0
+NC_002945.4	3874432	.	A	G	392.255	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=0;RO=0;RPL=7;RPP=3.73412;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=5.9056;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:458:-41.5705,-3.61236,0
+NC_002945.4	3878227	.	C	T	69.9397	.	AB=0.454545;ABP=3.20771;AC=1;AF=0.5;AN=2;AO=5;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=13.8677;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.1667;NS=1;NUMALT=1;ODDS=16.1042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=203;RO=6;RPL=5;RPP=13.8677;RPPR=4.45795;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=1;SRP=8.80089;SRR=5;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:203:5:190:-14.1561,0,-15.2831
+NC_002945.4	3879080	.	A	G	33.9427	.	AB=0.6;ABP=3.44459;AC=1;AF=0.5;AN=2;AO=3;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.73412;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=3.21978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=76;RO=2;RPL=3;RPP=9.52472;RPPR=7.35324;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:2,3:2:76:3:98:-7.63726,0,-5.70966
+NC_002945.4	3882858	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882859	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882860	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882861	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882862	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882863	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882864	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882865	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882866	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882867	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882868	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882869	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882870	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882871	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882872	.	N	.	.	.	.	GT	./.
+NC_002945.4	3882873	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3895368	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895369	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895370	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895371	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895372	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895373	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895374	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895375	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895376	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895377	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895378	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895379	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895380	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895381	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895382	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895383	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895384	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895385	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895386	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895387	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895388	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895389	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895390	.	N	.	.	.	.	GT	./.
+NC_002945.4	3895391	.	N	.	.	.	.	GT	./.
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+NC_002945.4	3969490	.	T	C	354.95099999999996	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=3;SAP=7.94546;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:417:-37.8823,-3.31133,0
+NC_002945.4	3972394	.	C	T	603.1990000000001	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=3.12459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=30.9448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=0;RO=0;RPL=11;RPP=4.03889;RPPR=0;RPR=8;RUN=1;SAF=17;SAP=28.7251;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:723:-65.4016,-5.71957,0
+NC_002945.4	3973135	.	T	C	341.649	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=0;RO=0;RPL=6;RPP=3.20771;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:399:-36.2511,-3.31133,0
+NC_002945.4	3976663	.	N	.	.	.	.	GT	./.
+NC_002945.4	3976664	.	N	.	.	.	.	GT	./.
+NC_002945.4	3977886	.	G	A	252.57	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=5;RPP=4.09604;RPPR=0;RPR=3;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:302:-27.5382,-2.40824,0
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+NC_002945.4	3988787	.	C	G	257.461	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:303:-27.6293,-2.40824,0
+NC_002945.4	3995646	.	A	G	536.197	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=18.4661;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=0;RO=0;RPL=6;RPP=6.20364;RPPR=0;RPR=11;RUN=1;SAF=8;SAP=3.13803;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:637:-57.6613,-5.11751,0
+NC_002945.4	3996187	.	G	C	253.54	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=4.09604;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=0;RO=0;RPL=4;RPP=3.0103;RPPR=0;RPR=4;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:308:-28.0824,-2.40824,0
+NC_002945.4	4003460	.	G	A	663.061	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=5.59539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=33.7174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=778;QR=0;RO=0;RPL=8;RPP=5.59539;RPPR=0;RPR=13;RUN=1;SAF=16;SAP=15.5221;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:778:-70.3453,-6.32163,0
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+NC_002945.4	4027025	.	G	A	525.717	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=26.7859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=0;RO=0;RPL=9;RPP=3.55317;RPPR=0;RPR=7;RUN=1;SAF=11;SAP=7.89611;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:612:-55.4189,-4.81648,0
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+NC_002945.4	4032905	.	G	A	452.918	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=8.59409;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=0;RO=0;RPL=7;RPP=3.0103;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:528:-47.8636,-4.21442,0
+NC_002945.4	4036115	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036116	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036117	.	N	.	.	.	.	GT	./.
+NC_002945.4	4036118	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4220513	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4227772	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4245762	.	A	G	446.686	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.63072;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=0;RO=0;RPL=9;RPP=5.49198;RPPR=0;RPR=5;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:521:-47.2314,-4.21442,0
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+NC_002945.4	4259259	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4259266	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259267	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4259270	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259271	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259272	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259273	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259274	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259275	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259276	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259277	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259278	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259279	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259280	.	N	.	.	.	.	GT	./.
+NC_002945.4	4259281	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4290998	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291000	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291003	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291005	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291006	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291014	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291015	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291016	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291017	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291020	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291022	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291023	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291042	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291045	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291046	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291047	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291048	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291049	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291050	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291051	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291052	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291053	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291054	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291055	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291056	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291059	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291060	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291067	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291071	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291072	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291077	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291091	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291092	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291093	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291094	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291095	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291096	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291097	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291098	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291102	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291104	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291105	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291106	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291107	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291108	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291109	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291110	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291111	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291114	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291115	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291120	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291121	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291122	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291123	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4291125	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291126	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291127	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291128	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291129	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291130	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291131	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291132	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291133	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291134	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291135	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291136	.	N	.	.	.	.	GT	./.
+NC_002945.4	4291137	.	N	.	.	.	.	GT	./.
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+NC_002945.4	4300356	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300357	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300358	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300359	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300360	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300361	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300362	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300363	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300364	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300365	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300366	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300367	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300368	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300369	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300370	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300371	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300372	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300373	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300374	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300375	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300376	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300377	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300378	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300379	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300380	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300381	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300382	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300383	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300384	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300385	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300386	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300387	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300388	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300389	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300390	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300391	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300392	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300393	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300394	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300395	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300396	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300397	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300398	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300399	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300400	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300401	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300402	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300403	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300404	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300405	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300406	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300407	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300408	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300409	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300410	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300411	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300412	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300413	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300414	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300415	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300416	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300417	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300418	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300419	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300420	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300421	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300422	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300423	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300424	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300425	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300426	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300427	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300428	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300429	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300430	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300431	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300432	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300433	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300434	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300435	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300436	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300437	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300438	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300439	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300440	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300441	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300442	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300443	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300444	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300445	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300446	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300447	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300448	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300449	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300450	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300451	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300452	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300453	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300454	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300455	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300456	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300457	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300458	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300459	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300460	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300461	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300462	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300463	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300464	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300465	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300466	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300467	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300468	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300469	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300470	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300471	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300472	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300473	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300474	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300475	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300476	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300477	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300478	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300479	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300480	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300481	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300482	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300483	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300484	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300485	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300486	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300487	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300488	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300489	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300490	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300491	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300492	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300493	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300494	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300495	.	N	.	.	.	.	GT	./.
+NC_002945.4	4300496	.	N	.	.	.	.	GT	./.
+NC_002945.4	4311425	.	C	T	351.275	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=3.20771;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=0;RO=0;RPL=5;RPP=3.20771;RPPR=0;RPR=6;RUN=1;SAF=5;SAP=3.20771;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:408:-37.0675,-3.31133,0
+NC_002945.4	4313435	.	C	T	383.19199999999995	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=0;RO=0;RPL=6;RPP=3.0103;RPPR=0;RPR=6;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:445:-40.3932,-3.61236,0
+NC_002945.4	4317284	.	G	A	589.275	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=4.9405;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=0;RO=0;RPL=10;RPP=3.49285;RPPR=0;RPR=8;RUN=1;SAF=9;SAP=3.0103;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:678:-61.3525,-5.41854,0
+NC_002945.4	4321302	.	A	C	422.501	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=4.51363;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=22.627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=0;RO=0;RPL=6;RPP=3.17734;RPPR=0;RPR=7;RUN=1;SAF=5;SAP=4.51363;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:491:-44.5366,-3.91339,0
+NC_002945.4	4321337	.	T	C	439.023	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=18.5208;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.0133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=0;RO=0;RPL=4;RPP=8.59409;RPPR=0;RPR=10;RUN=1;SAF=4;SAP=8.59409;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:536:-48.5856,-4.21442,0
+NC_002945.4	4321820	.	G	A	385.454	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=21.2407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=0;RO=0;RPL=8;RPP=5.9056;RPPR=0;RPR=4;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:452:-41.0276,-3.61236,0
+NC_002945.4	4332638	.	C	G	256.2	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.6955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=0;RO=0;RPL=3;RPP=4.09604;RPPR=0;RPR=5;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:306:-27.9011,-2.40824,0
+NC_002945.4	4339036	.	T	G	280.462	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=3.25157;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=0;RO=0;RPL=4;RPP=3.25157;RPPR=0;RPR=5;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:330:-30.049,-2.70927,0
+NC_002945.4	4341572	.	T	C	535.34	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=6.20364;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=0;RO=0;RPL=7;RPP=4.1599;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=4.1599;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:621:-56.2162,-5.11751,0
+NC_002945.4	4347891	.	G	A	161.347	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=0;RO=0;RPL=3;RPP=3.44459;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:192:-17.6501,-1.50515,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/Mbovis_define_filter.xlsx
Binary file test-data/Mbovis_define_filter.xlsx has changed
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/SRR1792272_zc.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/SRR1792272_zc.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,97 @@
+##fileformat=VCFv4.2
+##fileDate=20190125
+##source=freeBayes v1.2.0-dirty
+##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1792272/NC_002945v4.fasta
+##contig=<ID=NC_002945.4,length=4349904>
+##phasing=none
+##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1792272/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1792272/SRR1792272-nodup.bam --region NC_002945.4:0-100000
+##filter="QUAL > 20
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
+##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
+##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
+##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
+##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
+##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR1792272
+NC_002945.4	1057	.	A	G	8671.65	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=288;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=3.04046;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=403.858;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9688;QR=0;RO=0;RPL=157;RPP=8.10723;RPPR=0;RPR=131;RUN=1;SAF=146;SAP=3.13094;SAR=142;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:289:0,288:0:0:288:9688:-871.673,-86.6966,0
+NC_002945.4	29471	.	N	.	.	.	.	GT	./.
+NC_002945.4	29472	.	N	.	.	.	.	GT	./.
+NC_002945.4	29473	.	N	.	.	.	.	GT	./.
+NC_002945.4	29474	.	N	.	.	.	.	GT	./.
+NC_002945.4	29475	.	N	.	.	.	.	GT	./.
+NC_002945.4	29476	.	N	.	.	.	.	GT	./.
+NC_002945.4	29477	.	N	.	.	.	.	GT	./.
+NC_002945.4	29478	.	N	.	.	.	.	GT	./.
+NC_002945.4	29479	.	N	.	.	.	.	GT	./.
+NC_002945.4	41228	.	A	C	8160.68	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=279;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=12.5445;EPPR=3.32051;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=356.696;PAIRED=0.992832;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9191;QR=99;RO=7;RPL=131;RPP=5.2596;RPPR=3.32051;RPR=148;RUN=1;SAF=140;SAP=3.01808;SAR=139;SRF=0;SRP=18.2106;SRR=7;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:286:7,279:7:99:279:9191:-817.976,-77.0432,0
+NC_002945.4	151025	.	N	.	.	.	.	GT	./.
+NC_002945.4	151026	.	N	.	.	.	.	GT	./.
+NC_002945.4	151027	.	N	.	.	.	.	GT	./.
+NC_002945.4	151028	.	N	.	.	.	.	GT	./.
+NC_002945.4	151029	.	N	.	.	.	.	GT	./.
+NC_002945.4	151030	.	N	.	.	.	.	GT	./.
+NC_002945.4	151031	.	N	.	.	.	.	GT	./.
+NC_002945.4	151032	.	N	.	.	.	.	GT	./.
+NC_002945.4	151033	.	N	.	.	.	.	GT	./.
+NC_002945.4	151034	.	N	.	.	.	.	GT	./.
+NC_002945.4	179885	.	G	A	5857.59	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=209;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=6.01296;EPPR=11.6962;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=277.033;PAIRED=0.990431;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6578;QR=49;RO=4;RPL=106;RPP=3.10381;RPPR=5.18177;RPR=103;RUN=1;SAF=108;SAP=3.5194;SAR=101;SRF=3;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:214:4,209:4:49:209:6578:-587.486,-59.7074,0
+NC_002945.4	306695	.	N	.	.	.	.	GT	./.
+NC_002945.4	306696	.	N	.	.	.	.	GT	./.
+NC_002945.4	306697	.	N	.	.	.	.	GT	./.
+NC_002945.4	306698	.	N	.	.	.	.	GT	./.
+NC_002945.4	306699	.	N	.	.	.	.	GT	./.
+NC_002945.4	306700	.	N	.	.	.	.	GT	./.
+NC_002945.4	306701	.	N	.	.	.	.	GT	./.
+NC_002945.4	306702	.	N	.	.	.	.	GT	./.
+NC_002945.4	306703	.	N	.	.	.	.	GT	./.
+NC_002945.4	306704	.	N	.	.	.	.	GT	./.
+NC_002945.4	319911	.	C	T	5833.3	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=187;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=3.95088;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.9412;MQMR=0;NS=1;NUMALT=1;ODDS=263.842;PAIRED=0.989305;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6529;QR=0;RO=0;RPL=101;RPP=5.62303;RPPR=0;RPR=86;RUN=1;SAF=95;SAP=3.11481;SAR=92;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:189:0,187:0:0:187:6529:-587.398,-56.2926,0
+NC_002945.4	332160	.	N	.	.	.	.	GT	./.
+NC_002945.4	332161	.	N	.	.	.	.	GT	./.
+NC_002945.4	332162	.	N	.	.	.	.	GT	./.
+NC_002945.4	332163	.	N	.	.	.	.	GT	./.
+NC_002945.4	332164	.	N	.	.	.	.	GT	./.
+NC_002945.4	332165	.	N	.	.	.	.	GT	./.
+NC_002945.4	332166	.	N	.	.	.	.	GT	./.
+NC_002945.4	332167	.	N	.	.	.	.	GT	./.
+NC_002945.4	332168	.	N	.	.	.	.	GT	./.
+NC_002945.4	332169	.	N	.	.	.	.	GT	./.
+NC_002945.4	332215	.	C	G	534.316	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=36.4899;PAIRED=0.913043;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:821:-74.2027,-6.92369,0
+NC_002945.4	333461	.	N	.	.	.	.	GT	./.
+NC_002945.4	333462	.	N	.	.	.	.	GT	./.
+NC_002945.4	333463	.	N	.	.	.	.	GT	./.
+NC_002945.4	333464	.	N	.	.	.	.	GT	./.
+NC_002945.4	333465	.	N	.	.	.	.	GT	./.
+NC_002945.4	333466	.	N	.	.	.	.	GT	./.
+NC_002945.4	333467	.	N	.	.	.	.	GT	./.
+NC_002945.4	333468	.	N	.	.	.	.	GT	./.
+NC_002945.4	333469	.	N	.	.	.	.	GT	./.
+NC_002945.4	333470	.	N	.	.	.	.	GT	./.
+NC_002945.4	334320	.	T	C	4403.03	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=158;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=3.88988;EPPR=3.0103;GTI=0;LEN=1;MEANALT=2;MQ=52.481;MQMR=39;NS=1;NUMALT=1;ODDS=205.555;PAIRED=0.987342;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5203;QR=70;RO=2;RPL=71;RPP=6.52863;RPPR=7.35324;RPR=87;RUN=1;SAF=84;SAP=4.38465;SAR=74;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:161:2,158:2:70:158:5203:-443.268,-42.0072,0
+NC_002945.4	336585	.	N	.	.	.	.	GT	./.
+NC_002945.4	336586	.	N	.	.	.	.	GT	./.
+NC_002945.4	336587	.	N	.	.	.	.	GT	./.
+NC_002945.4	336588	.	N	.	.	.	.	GT	./.
+NC_002945.4	336589	.	N	.	.	.	.	GT	./.
+NC_002945.4	336590	.	N	.	.	.	.	GT	./.
+NC_002945.4	336591	.	N	.	.	.	.	GT	./.
+NC_002945.4	336592	.	N	.	.	.	.	GT	./.
+NC_002945.4	336593	.	N	.	.	.	.	GT	./.
+NC_002945.4	336594	.	N	.	.	.	.	GT	./.
+NC_002945.4	336595	.	N	.	.	.	.	GT	./.
+NC_002945.4	340088	.	G	A	5406.05	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=169;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=4.05106;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=59.503;MQMR=0;NS=1;NUMALT=1;ODDS=238.889;PAIRED=0.994083;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6099;QR=0;RO=0;RPL=58;RPP=39.103;RPPR=0;RPR=111;RUN=1;SAF=89;SAP=4.05106;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:170:0,169:0:0:169:6099:-548.098,-50.8741,0
+NC_002945.4	624554	.	N	.	.	.	.	GT	./.
+NC_002945.4	624555	.	N	.	.	.	.	GT	./.
+NC_002945.4	624556	.	N	.	.	.	.	GT	./.
+NC_002945.4	624557	.	N	.	.	.	.	GT	./.
+NC_002945.4	624558	.	N	.	.	.	.	GT	./.
+NC_002945.4	624559	.	N	.	.	.	.	GT	./.
+NC_002945.4	624560	.	N	.	.	.	.	GT	./.
+NC_002945.4	624561	.	N	.	.	.	.	GT	./.
+NC_002945.4	624562	.	N	.	.	.	.	GT	./.
+NC_002945.4	624563	.	N	.	.	.	.	GT	./.
+NC_002945.4	641896	.	A	C	6646.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=217;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=5.26183;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=305.431;PAIRED=0.990783;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7442;QR=0;RO=0;RPL=94;RPP=11.426;RPPR=0;RPR=123;RUN=1;SAF=101;SAP=5.26183;SAR=116;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:217:0,217:0:0:217:7442:-669.755,-65.3235,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/SRR8073662_zc.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/SRR8073662_zc.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,64 @@
+##fileformat=VCFv4.2
+##fileDate=20190125
+##source=freeBayes v1.2.0-dirty
+##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/NC_002945v4.fasta
+##contig=<ID=NC_002945.4,length=4349904>
+##phasing=none
+##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR8073662/SRR8073662-nodup.bam --region NC_002945.4:0-100000
+##filter="QUAL > 20
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
+##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
+##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
+##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
+##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
+##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR8073662
+NC_002945.4	1057	.	A	G	1991.37	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=78;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=4.01252;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=112.736;PAIRED=0.961538;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2256;QR=0;RO=0;RPL=41;RPP=3.45573;RPPR=0;RPR=37;RUN=1;SAF=47;SAP=10.1372;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,78:0:0:78:2256:-203.125,-23.4803,0
+NC_002945.4	29470	.	N	.	.	.	.	GT	./.
+NC_002945.4	29471	.	N	.	.	.	.	GT	./.
+NC_002945.4	29472	.	N	.	.	.	.	GT	./.
+NC_002945.4	29473	.	N	.	.	.	.	GT	./.
+NC_002945.4	29474	.	N	.	.	.	.	GT	./.
+NC_002945.4	29475	.	N	.	.	.	.	GT	./.
+NC_002945.4	29476	.	N	.	.	.	.	GT	./.
+NC_002945.4	29477	.	N	.	.	.	.	GT	./.
+NC_002945.4	29478	.	N	.	.	.	.	GT	./.
+NC_002945.4	33788	.	A	G	1024.83	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=3.22745;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=60.0569;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=0;RO=0;RPL=21;RPP=3.22745;RPPR=0;RPR=19;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1290:-116.37,-12.0412,0
+NC_002945.4	132052	.	N	.	.	.	.	GT	./.
+NC_002945.4	132620	.	N	.	.	.	.	GT	./.
+NC_002945.4	132621	.	N	.	.	.	.	GT	./.
+NC_002945.4	132622	.	N	.	.	.	.	GT	./.
+NC_002945.4	132623	.	N	.	.	.	.	GT	./.
+NC_002945.4	132624	.	N	.	.	.	.	GT	./.
+NC_002945.4	132625	.	N	.	.	.	.	GT	./.
+NC_002945.4	132626	.	N	.	.	.	.	GT	./.
+NC_002945.4	132627	.	N	.	.	.	.	GT	./.
+NC_002945.4	132628	.	N	.	.	.	.	GT	./.
+NC_002945.4	132629	.	N	.	.	.	.	GT	./.
+NC_002945.4	140686	.	A	G	2969.95	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=110;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=4.2737;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=157.098;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3362;QR=0;RO=0;RPL=71;RPP=23.2247;RPPR=0;RPR=39;RUN=1;SAF=52;SAP=3.72096;SAR=58;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:112:0,110:0:0:110:3362:-302.582,-33.1133,0
+NC_002945.4	149955	.	N	.	.	.	.	GT	./.
+NC_002945.4	149956	.	N	.	.	.	.	GT	./.
+NC_002945.4	149957	.	N	.	.	.	.	GT	./.
+NC_002945.4	149958	.	N	.	.	.	.	GT	./.
+NC_002945.4	149959	.	N	.	.	.	.	GT	./.
+NC_002945.4	149960	.	N	.	.	.	.	GT	./.
+NC_002945.4	149961	.	N	.	.	.	.	GT	./.
+NC_002945.4	149962	.	N	.	.	.	.	GT	./.
+NC_002945.4	149963	.	N	.	.	.	.	GT	./.
+NC_002945.4	149964	.	N	.	.	.	.	GT	./.
+NC_002945.4	160535	.	T	C	1804.25	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=74;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=3.12768;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQ=59.8649;MQMR=60;NS=1;NUMALT=1;ODDS=100.699;PAIRED=0.986486;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2050;QR=25;RO=2;RPL=41;RPP=4.88833;RPPR=7.35324;RPR=33;RUN=1;SAF=31;SAP=7.23587;SAR=43;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:2,74:2:25:74:2050:-182.337,-20.5033,0
+NC_002945.4	306688	.	N	.	.	.	.	GT	./.
+NC_002945.4	306689	.	N	.	.	.	.	GT	./.
+NC_002945.4	306690	.	N	.	.	.	.	GT	./.
+NC_002945.4	306691	.	N	.	.	.	.	GT	./.
+NC_002945.4	306692	.	N	.	.	.	.	GT	./.
+NC_002945.4	306693	.	N	.	.	.	.	GT	./.
+NC_002945.4	306694	.	N	.	.	.	.	GT	./.
+NC_002945.4	306695	.	N	.	.	.	.	GT	./.
+NC_002945.4	306696	.	N	.	.	.	.	GT	./.
+NC_002945.4	306697	.	N	.	.	.	.	GT	./.
+NC_002945.4	319911	.	C	T	1185.93	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=3.0608;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=64.2158;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=0;RO=0;RPL=20;RPP=3.46479;RPPR=0;RPR=23;RUN=1;SAF=22;SAP=3.0608;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1346:-121.399,-12.9443,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/input_zc_vcf.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_zc_vcf.vcf	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,82 @@
+##fileformat=VCFv4.2
+##fileDate=20190125
+##source=freeBayes v1.2.0-dirty
+##reference=/scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta
+##contig=<ID=NC_002945.4,length=4349904>
+##phasing=none
+##commandline="freebayes -E -1 -e 1 -u --strict-vcf -f /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/NC_002945v4.fasta /scratch/analysis_staging/a_script/vcf_test_files_sra_downloaded_2019-01-23/SRR1791698/SRR1791698-nodup.bam --region NC_002945.4:0-100000
+##filter="QUAL > 20
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SRR1791698
+NC_002945.4	1057	.	A	G	7624.7	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=262;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=4.20378;EPPR=5.18177;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=60;NS=1;NUMALT=1;ODDS=363.221;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8526;QR=12;RO=1;RPL=140;RPP=5.69563;RPPR=5.18177;RPR=122;RUN=1;SAF=139;SAP=5.13204;SAR=123;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:265:1,262:1:12:262:8526:-766.088,-78.0909,0
+NC_002945.4	4480	.	T	C	4142.4	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=144;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=3.07062;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=204.232;PAIRED=0.993056;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4647;QR=0;RO=0;RPL=79;RPP=5.96592;RPPR=0;RPR=65;RUN=1;SAF=72;SAP=3.0103;SAR=72;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:145:0,144:0:0:144:4647:-418.074,-43.3483,0
+NC_002945.4	8741	.	T	C	5252.19	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=184;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=16.6528;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=259.683;PAIRED=0.98913;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5901;QR=0;RO=0;RPL=81;RPP=8.72222;RPPR=0;RPR=103;RUN=1;SAF=98;SAP=4.70971;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:186:0,184:0:0:184:5901:-531.016,-55.3895,0
+NC_002945.4	29061	.	C	T	4714.63	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=163;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=3.1302;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=230.571;PAIRED=0.969325;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5311;QR=0;RO=0;RPL=59;RPP=29.9872;RPPR=0;RPR=104;RUN=1;SAF=83;SAP=3.1302;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:164:0,163:0:0:163:5311:-477.817,-49.0679,0
+NC_002945.4	29471	.	N	.	.	.	.	GT	./.
+NC_002945.4	29472	.	N	.	.	.	.	GT	./.
+NC_002945.4	29473	.	N	.	.	.	.	GT	./.
+NC_002945.4	29474	.	N	.	.	.	.	GT	./.
+NC_002945.4	29475	.	N	.	.	.	.	GT	./.
+NC_002945.4	29476	.	N	.	.	.	.	GT	./.
+NC_002945.4	29477	.	N	.	.	.	.	GT	./.
+NC_002945.4	29478	.	N	.	.	.	.	GT	./.
+NC_002945.4	29479	.	N	.	.	.	.	GT	./.
+NC_002945.4	29480	.	N	.	.	.	.	GT	./.
+NC_002945.4	29481	.	N	.	.	.	.	GT	./.
+NC_002945.4	29482	.	N	.	.	.	.	GT	./.
+NC_002945.4	29483	.	N	.	.	.	.	GT	./.
+NC_002945.4	29484	.	N	.	.	.	.	GT	./.
+NC_002945.4	29485	.	N	.	.	.	.	GT	./.
+NC_002945.4	29486	.	N	.	.	.	.	GT	./.
+NC_002945.4	29487	.	N	.	.	.	.	GT	./.
+NC_002945.4	29488	.	N	.	.	.	.	GT	./.
+NC_002945.4	29489	.	N	.	.	.	.	GT	./.
+NC_002945.4	29490	.	N	.	.	.	.	GT	./.
+NC_002945.4	29491	.	N	.	.	.	.	GT	./.
+NC_002945.4	29492	.	N	.	.	.	.	GT	./.
+NC_002945.4	29493	.	N	.	.	.	.	GT	./.
+NC_002945.4	29494	.	N	.	.	.	.	GT	./.
+NC_002945.4	29495	.	N	.	.	.	.	GT	./.
+NC_002945.4	29496	.	N	.	.	.	.	GT	./.
+NC_002945.4	29497	.	N	.	.	.	.	GT	./.
+NC_002945.4	29498	.	N	.	.	.	.	GT	./.
+NC_002945.4	29499	.	N	.	.	.	.	GT	./.
+NC_002945.4	29500	.	N	.	.	.	.	GT	./.
+NC_002945.4	29501	.	N	.	.	.	.	GT	./.
+NC_002945.4	29502	.	N	.	.	.	.	GT	./.
+NC_002945.4	29503	.	N	.	.	.	.	GT	./.
+NC_002945.4	29504	.	N	.	.	.	.	GT	./.
+NC_002945.4	29505	.	N	.	.	.	.	GT	./.
+NC_002945.4	29506	.	N	.	.	.	.	GT	./.
+NC_002945.4	29507	.	N	.	.	.	.	GT	./.
+NC_002945.4	29508	.	N	.	.	.	.	GT	./.
+NC_002945.4	29509	.	N	.	.	.	.	GT	./.
+NC_002945.4	29510	.	N	.	.	.	.	GT	./.
+NC_002945.4	29511	.	N	.	.	.	.	GT	./.
+NC_002945.4	29512	.	N	.	.	.	.	GT	./.
+NC_002945.4	29513	.	N	.	.	.	.	GT	./.
+NC_002945.4	29514	.	N	.	.	.	.	GT	./.
+NC_002945.4	29515	.	N	.	.	.	.	GT	./.
+NC_002945.4	29516	.	N	.	.	.	.	GT	./.
+NC_002945.4	29517	.	N	.	.	.	.	GT	./.
+NC_002945.4	29518	.	N	.	.	.	.	GT	./.
+NC_002945.4	29519	.	N	.	.	.	.	GT	./.
+NC_002945.4	29520	.	N	.	.	.	.	GT	./.
+NC_002945.4	334320	.	T	C	2194.66	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=3.69747;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=0;RO=0;RPL=41;RPP=3.25768;RPPR=0;RPR=38;RUN=1;SAF=46;SAP=7.6556;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,79:0:0:79:2577:-223.164,-23.7814,0
+NC_002945.4	334323	.	T	C	2171.15	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=5.23675;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=53.4051;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=0;RO=0;RPL=40;RPP=3.03779;RPPR=0;RPR=39;RUN=1;SAF=45;SAP=6.33623;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79:0:0:79:2540:-220.812,-23.7814,0
+NC_002945.4	339406	.	N	.	.	.	.	GT	./.
+NC_002945.4	339407	.	N	.	.	.	.	GT	./.
+NC_002945.4	339408	.	N	.	.	.	.	GT	./.
+NC_002945.4	339409	.	N	.	.	.	.	GT	./.
+NC_002945.4	339410	.	N	.	.	.	.	GT	./.
+NC_002945.4	339411	.	N	.	.	.	.	GT	./.
+NC_002945.4	340088	.	G	A	2525.17	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=81;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=17.1919;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=58.5062;MQMR=0;NS=1;NUMALT=1;ODDS=116.895;PAIRED=0.987654;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2863;QR=0;RO=0;RPL=39;RPP=3.25157;RPPR=0;RPR=42;RUN=1;SAF=39;SAP=3.25157;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,81:0:0:81:2863:-257.146,-24.3834,0
+NC_002945.4	340090	.	C	T	2327.84	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=80;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=18.6449;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4;MQMR=0;NS=1;NUMALT=1;ODDS=115.509;PAIRED=0.9875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2643;QR=0;RO=0;RPL=40;RPP=3.0103;RPPR=0;RPR=40;RUN=1;SAF=38;SAP=3.44459;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,80:0:0:80:2643:-237.547,-24.0824,0
+NC_002945.4	340091	.	G	A	2328.64	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=80;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=16.1477;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4;MQMR=0;NS=1;NUMALT=1;ODDS=115.509;PAIRED=0.9875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2649;QR=0;RO=0;RPL=41;RPP=3.11887;RPPR=0;RPR=39;RUN=1;SAF=38;SAP=3.44459;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,80:0:0:80:2649:-237.385,-24.0824,0
+NC_002945.4	340092	.	G	C	2407.91	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=79;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=17.5509;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=58.8228;MQMR=0;NS=1;NUMALT=1;ODDS=114.122;PAIRED=0.987342;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2733;QR=0;RO=0;RPL=42;RPP=3.69747;RPPR=0;RPR=37;RUN=1;SAF=37;SAP=3.69747;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,79:0:0:79:2733:-245.528,-23.7814,0
+NC_002945.4	340097	.	C	G	2471.31	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=16.8502;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.4578;MQMR=0;NS=1;NUMALT=1;ODDS=119.668;PAIRED=0.987952;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2802;QR=0;RO=0;RPL=43;RPP=3.24576;RPPR=0;RPR=40;RUN=1;SAF=40;SAP=3.24576;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2802:-251.74,-24.9855,0
+NC_002945.4	362818	.	T	C	400.106	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=6.62942;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=58.6667;MQMR=0;NS=1;NUMALT=1;ODDS=25.3996;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=0;RO=0;RPL=7;RPP=3.15506;RPPR=0;RPR=8;RUN=1;SAF=3;SAP=14.7363;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:483:-43.6129,-4.51545,0
+NC_002945.4	364560	.	A	G	6594.02	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=209;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=14.3248;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=59.9234;MQMR=0;NS=1;NUMALT=1;ODDS=294.341;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7388;QR=0;RO=0;RPL=116;RPP=8.50651;RPPR=0;RPR=93;RUN=1;SAF=103;SAP=3.10381;SAR=106;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:209:0,209:0:0:209:7388:-664.866,-62.9153,0
+NC_002945.4	364804	.	T	C	5622.3	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=193;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=7.97206;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=272.16;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6321;QR=0;RO=0;RPL=119;RPP=25.7939;RPPR=0;RPR=74;RUN=1;SAF=90;SAP=4.91174;SAR=103;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:193:0,193:0:0:193:6321:-568.925,-58.0988,0
+NC_002945.4	366022	.	T	C	4678.56	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=159;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=3.35173;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=225.026;PAIRED=0.987421;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5277;QR=0;RO=0;RPL=103;RPP=33.1787;RPPR=0;RPR=56;RUN=1;SAF=89;SAP=7.9405;SAR=70;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:159:0,159:0:0:159:5277:-475.022,-47.8638,0
+NC_002945.4	402148	.	G	T	85.8237	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQ=40;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:136:-12.1947,-1.20412,0
+NC_002945.4	407246	.	C	G	2433.98	.	AB=0;ABP=0;AC=2;AF=1;AN=2;AO=91;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=7.04303;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQ=60;MQMR=0;NS=1;NUMALT=1;ODDS=130.758;PAIRED=0.989011;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2860;QR=0;RO=0;RPL=42;RPP=4.17955;RPPR=0;RPR=49;RUN=1;SAF=14;SAP=97.7199;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.ILLUMINA=1	GT:DP:AD:RO:QR:AO:QA:GL	1/1:93:0,91:0:0:91:2860:-257.436,-27.3937,0
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/json_all_vcf.json
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/json_all_vcf.json	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,1 @@
+{"columns":[
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/json_avg_mq_all_vcf.json
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/json_avg_mq_all_vcf.json	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,1 @@
+{"name":null,"index":[
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/output_summary.html
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_summary.html	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,6 @@
+<html>
+<head></head>
+<br/><b>Number of VCF inputs:</b> 3<br/><b>Reference:</b>
+<br/><b>Total run time:</b>
+</body>
+</html>
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/vsnp_excel.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/vsnp_excel.loc	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,3 @@
+## vSNP Excel files
+#Value	Name	Path	Description
+89	Mbovis_define_filter.xlsx	${__HERE__}/Mbovis_define_filter.xlsx	Excel file for AF2122
diff -r 5a5cf6f024bf -r 9ddeef840a07 test-data/vsnp_genbank.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/vsnp_genbank.loc	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,3 @@
+## vSNP Genbank files
+#Value  Name    Path    Description
+AF2122  NC_002945v4.gbk ${__HERE__}/NC_002945v4.gbk Genbank file for AF2122
diff -r 5a5cf6f024bf -r 9ddeef840a07 tool-data/vsnp_excel.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/vsnp_excel.loc.sample	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,4 @@
+## vSNP Excel files
+#Value	Name	Path	Description
+#AF2122	Mbovis_define_filter.xlsx	vsnp/AF2122/Mbovis_define_filter.xlsx	Excel file for Mycobacterium bovis AF2122/97
+#NC_006932	Bab1_define_filter.xlsx	vsnp/NC_006932/Bab1_define_filter.xlsx	Excel file for Brucella abortus bv. 1 str. 9-941
diff -r 5a5cf6f024bf -r 9ddeef840a07 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Fri Aug 27 11:46:15 2021 +0000
+++ b/tool_data_table_conf.xml.sample	Tue Nov 16 08:26:14 2021 +0000
@@ -9,10 +9,15 @@
         <columns>value, name, path, description</columns>
         <file path="tool-data/vsnp_genbank.loc" />
     </table>
-    <!-- Location of dnaprints files for vsnp_dtermine_ref_from_data tool -->
+    <!-- Location of dnaprints files for vsnp_determine_ref_from_data tool -->
     <table name="vsnp_dnaprints" comment_char="#">
         <columns>value, name, path, description</columns>
         <file path="tool-data/vsnp_dnaprints.loc" />
     </table>
+    <!-- Location of excel files for vsnp_get_snps tool -->
+    <table name="vsnp_excel" comment_char="#">
+        <columns>value, name, path, description</columns>
+        <file path="tool-data/vsnp_excel.loc" />
+    </table>
 </tables>
 
diff -r 5a5cf6f024bf -r 9ddeef840a07 tool_data_table_conf.xml.test
--- a/tool_data_table_conf.xml.test	Fri Aug 27 11:46:15 2021 +0000
+++ b/tool_data_table_conf.xml.test	Tue Nov 16 08:26:14 2021 +0000
@@ -12,4 +12,9 @@
         <columns>value, name, path, description</columns>
         <file path="${__HERE__}/test-data/vsnp_dnaprints.loc" />
     </table>
+    <!-- Location of excel files for vsnp_get_snps tool -->
+    <table name="vsnp_excel" comment_char="#">
+        <columns>value, name, path, description</columns>
+        <file path="${__HERE__}/test-data/vsnp_excel.loc" />
+    </table>
 </tables>
diff -r 5a5cf6f024bf -r 9ddeef840a07 vsnp_add_zero_coverage.xml
--- a/vsnp_add_zero_coverage.xml	Fri Aug 27 11:46:15 2021 +0000
+++ b/vsnp_add_zero_coverage.xml	Tue Nov 16 08:26:14 2021 +0000
@@ -44,9 +44,7 @@
                 </param>
             </when>
             <when value="history">
-                <param name="reference" type="data" format="fasta,fasta.gz" label="Using reference genome">
-                    <validator type="no_options" message="The current history does not include a fasta dataset"/>
-                </param>
+                <param name="reference" type="data" format="fasta,fasta.gz" label="Using reference genome"/>
             </when>
         </conditional>
     </inputs>
diff -r 5a5cf6f024bf -r 9ddeef840a07 vsnp_get_snps.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vsnp_get_snps.py	Tue Nov 16 08:26:14 2021 +0000
@@ -0,0 +1,511 @@
+#!/usr/bin/env python
+
+# Collect quality parsimonious SNPs from vcf files
+# and output alignment files in fasta format.
+
+import argparse
+import multiprocessing
+import os
+import queue
+import shutil
+import sys
+import time
+from collections import OrderedDict
+from datetime import datetime
+
+import pandas
+import vcf
+
+
+def get_time_stamp():
+    return datetime.fromtimestamp(time.time()).strftime('%Y-%m-%d %H-%M-%S')
+
+
+def set_num_cpus(num_files, processes):
+    num_cpus = int(multiprocessing.cpu_count())
+    if num_files < num_cpus and num_files < processes:
+        return num_files
+    if num_cpus < processes:
+        half_cpus = int(num_cpus / 2)
+        if num_files < half_cpus:
+            return num_files
+        return half_cpus
+    return processes
+
+
+def setup_all_vcfs(vcf_files, vcf_dirs):
+    # Create the all_vcfs directory and link
+    # all input vcf files into it for processing.
+    all_vcfs_dir = 'all_vcf'
+    os.makedirs(all_vcfs_dir)
+    vcf_dirs.append(all_vcfs_dir)
+    for vcf_file in vcf_files:
+        file_name_base = os.path.basename(vcf_file)
+        dst_file = os.path.join(all_vcfs_dir, file_name_base)
+        os.symlink(vcf_file, dst_file)
+    return vcf_dirs
+
+
+class SnpFinder:
+
+    def __init__(self, num_files, dbkey, input_excel, all_isolates, ac, min_mq, quality_score_n_threshold, min_quality_score, input_vcf_dir, output_json_avg_mq_dir, output_json_snps_dir, output_snps_dir, output_summary):
+        # Allele count
+        self.ac = ac
+        # Create a group that will contain all isolates.
+        self.all_isolates = all_isolates
+        # Evolving positions dictionary.
+        self.all_positions = None
+        # Isolate groups.
+        self.groups = []
+        # Excel file for grouping.
+        self.input_excel = input_excel
+        # Directory of input zero coverage vcf files.
+        self.input_vcf_dir = input_vcf_dir
+        # Minimum map quality value.
+        self.min_mq = min_mq
+        # Minimum quality score value.
+        self.min_quality_score = min_quality_score
+        # Number of input zero coverage vcf files.
+        self.num_files = num_files
+        # Output directory for json average mq files.
+        self.output_json_avg_mq_dir = output_json_avg_mq_dir
+        # Output directory for json snps files.
+        self.output_json_snps_dir = output_json_snps_dir
+        # Output directory for snps files.
+        self.output_snps_dir = output_snps_dir
+        # Quality score N threshold value.
+        self.quality_score_n_threshold = quality_score_n_threshold
+        self.dbkey = dbkey
+        self.start_time = get_time_stamp()
+        self.summary_str = ""
+        self.timer_start = datetime.now()
+        self.initiate_summary(output_summary)
+
+    def append_to_summary(self, html_str):
+        # Append a string to the html summary output file.
+        self.summary_str = "%s%s" % (self.summary_str, html_str)
+
+    def bin_input_files(self, filename, samples_groups_dict, defining_snps, inverted_defining_snps, found_positions, found_positions_mix):
+        # Categorize input files into closely related
+        # isolate groups based on discovered SNPs, and
+        # return a group dictionary.
+        sample_groups_list = []
+        table_name = self.get_sample_name(filename)
+        defining_snp = False
+        # Absolute positions in set union of two lists.
+        for abs_position in list(defining_snps.keys() & (found_positions.keys() | found_positions_mix.keys())):
+            group = defining_snps[abs_position]
+            sample_groups_list.append(group)
+            self.check_add_group(group)
+            if len(list(defining_snps.keys() & found_positions_mix.keys())) > 0:
+                table_name = self.get_sample_name(filename)
+                table_name = '%s<font color="red">[[MIXED]]</font>' % table_name
+            self.copy_file(filename, group)
+            defining_snp = True
+        if not set(inverted_defining_snps.keys()).intersection(found_positions.keys() | found_positions_mix.keys()):
+            for abs_position in list(inverted_defining_snps.keys()):
+                group = inverted_defining_snps[abs_position]
+                sample_groups_list.append(group)
+                self.check_add_group(group)
+                self.copy_file(filename, group)
+                defining_snp = True
+        if defining_snp:
+            samples_groups_dict[table_name] = sorted(sample_groups_list)
+        else:
+            samples_groups_dict[table_name] = ['<font color="red">No defining SNP</font>']
+        return samples_groups_dict
+
+    def check_add_group(self, group):
+        # Add a group if it is npt already in the list.
+        if group not in self.groups:
+            self.groups.append(group)
+
+    def copy_file(self, filename, dir):
+        if not os.path.exists(dir):
+            os.makedirs(dir)
+        shutil.copy(filename, dir)
+
+    def decide_snps(self, filename):
+        # Find the SNPs in a vcf file to produce a pandas data
+        # frame and a dictionary containing sample map qualities.
+        positions_dict = self.all_positions
+        sample_map_qualities = {}
+        # Eliminate the path.
+        file_name_base = self.get_sample_name(filename)
+        vcf_reader = vcf.Reader(open(filename, 'r'))
+        sample_dict = {}
+        for record in vcf_reader:
+            alt = str(record.ALT[0])
+            record_position = "%s:%s" % (str(record.CHROM), str(record.POS))
+            if record_position in positions_dict:
+                if alt == "None":
+                    sample_dict.update({record_position: "-"})
+                else:
+                    # On rare occassions MQM gets called "NaN", thus passing
+                    # a string when a number is expected when calculating average.
+                    mq_val = self.get_mq_val(record.INFO, filename)
+                    if str(mq_val).lower() not in ["nan"]:
+                        sample_map_qualities.update({record_position: mq_val})
+                    if len(alt) == 1:
+                        qual_val = self.val_as_int(record.QUAL)
+                        ac = record.INFO['AC'][0]
+                        ref = str(record.REF[0])
+                        if ac == 2 and qual_val > self.quality_score_n_threshold:
+                            # Add the SNP to a group.
+                            sample_dict.update({record_position: alt})
+                        elif ac == 1 and qual_val > self.quality_score_n_threshold:
+                            # The position is ambiguous.
+                            alt_ref = "%s%s" % (alt, ref)
+                            if alt_ref == "AG":
+                                sample_dict.update({record_position: "R"})
+                            elif alt_ref == "CT":
+                                sample_dict.update({record_position: "Y"})
+                            elif alt_ref == "GC":
+                                sample_dict.update({record_position: "S"})
+                            elif alt_ref == "AT":
+                                sample_dict.update({record_position: "W"})
+                            elif alt_ref == "GT":
+                                sample_dict.update({record_position: "K"})
+                            elif alt_ref == "AC":
+                                sample_dict.update({record_position: "M"})
+                            elif alt_ref == "GA":
+                                sample_dict.update({record_position: "R"})
+                            elif alt_ref == "TC":
+                                sample_dict.update({record_position: "Y"})
+                            elif alt_ref == "CG":
+                                sample_dict.update({record_position: "S"})
+                            elif alt_ref == "TA":
+                                sample_dict.update({record_position: "W"})
+                            elif alt_ref == "TG":
+                                sample_dict.update({record_position: "K"})
+                            elif alt_ref == "CA":
+                                sample_dict.update({record_position: "M"})
+                            else:
+                                sample_dict.update({record_position: "N"})
+                            # Poor calls
+                        elif qual_val <= 50:
+                            # Call the reference allele.
+                            # Do not coerce record.REF[0] to a string!
+                            sample_dict.update({record_position: record.REF[0]})
+                        elif qual_val <= self.quality_score_n_threshold:
+                            sample_dict.update({record_position: "N"})
+                        else:
+                            # Insurance -- Will still report on a possible
+                            # SNP even if missed with above statements.
+                            # Do not coerce record.REF[0] to a string!
+                            sample_dict.update({record_position: record.REF[0]})
+        # Merge dictionaries and order
+        merge_dict = {}
+        merge_dict.update(positions_dict)
+        merge_dict.update(sample_dict)
+        sample_df = pandas.DataFrame(merge_dict, index=[file_name_base])
+        return sample_df, file_name_base, sample_map_qualities
+
+    def df_to_fasta(self, parsimonious_df, group):
+        # Generate SNP alignment file from
+        # the parsimonious_df data frame.
+        snps_file = os.path.join(self.output_snps_dir, "%s.fasta" % group)
+        test_duplicates = []
+        has_sequence_data = False
+        for index, row in parsimonious_df.iterrows():
+            for pos in row:
+                if len(pos) > 0:
+                    has_sequence_data = True
+                    break
+        if has_sequence_data:
+            with open(snps_file, 'w') as fh:
+                for index, row in parsimonious_df.iterrows():
+                    test_duplicates.append(row.name)
+                    if test_duplicates.count(row.name) < 2:
+                        print(f'>{row.name}', file=fh)
+                        for pos in row:
+                            print(pos, end='', file=fh)
+                        print("", file=fh)
+        return has_sequence_data
+
+    def find_initial_positions(self, filename):
+        # Find SNP positions in a vcf file.
+        found_positions = {}
+        found_positions_mix = {}
+        vcf_reader = vcf.Reader(open(filename, 'r'))
+        for record in vcf_reader:
+            qual_val = self.val_as_int(record.QUAL)
+            chrom = record.CHROM
+            position = record.POS
+            absolute_position = "%s:%s" % (str(chrom), str(position))
+            alt = str(record.ALT[0])
+            if alt != "None":
+                mq_val = self.get_mq_val(record.INFO, filename)
+                ac = record.INFO['AC'][0]
+                if ac == self.ac and len(record.REF) == 1 and qual_val > self.min_quality_score and mq_val > self.min_mq:
+                    found_positions.update({absolute_position: record.REF})
+                if ac == 1 and len(record.REF) == 1 and qual_val > self.min_quality_score and mq_val > self.min_mq:
+                    found_positions_mix.update({absolute_position: record.REF})
+        return found_positions, found_positions_mix
+
+    def gather_and_filter(self, prefilter_df, mq_averages, group_dir):
+        # Group a data frame of SNPs.
+        if self.input_excel is None:
+            filtered_all_df = prefilter_df
+            sheet_names = None
+        else:
+            # Filter positions to be removed from all.
+            xl = pandas.ExcelFile(self.input_excel)
+            sheet_names = xl.sheet_names
+            # Use the first column to filter "all" postions.
+            exclusion_list_all = self.get_position_list(sheet_names, 0)
+            exclusion_list_group = self.get_position_list(sheet_names, group_dir)
+            exclusion_list = exclusion_list_all + exclusion_list_group
+            # Filters for all applied.
+            filtered_all_df = prefilter_df.drop(columns=exclusion_list, errors='ignore')
+        json_snps_file = os.path.join(self.output_json_snps_dir, "%s.json" % group_dir)
+        parsimonious_df = self.get_parsimonious_df(filtered_all_df)
+        samples_number, columns = parsimonious_df.shape
+        if samples_number >= 4:
+            # Sufficient samples have been found
+            # to build a phylogenetic tree.
+            has_sequence_data = self.df_to_fasta(parsimonious_df, group_dir)
+            if has_sequence_data:
+                json_avg_mq_file = os.path.join(self.output_json_avg_mq_dir, "%s.json" % group_dir)
+                mq_averages.to_json(json_avg_mq_file, orient='split')
+                parsimonious_df.to_json(json_snps_file, orient='split')
+            else:
+                msg = "<br/>No sequence data"
+                if group_dir is not None:
+                    msg = "%s for group: %s" % (msg, group_dir)
+                self.append_to_summary("%s<br/>\n" % msg)
+        else:
+            msg = "<br/>Too few samples to build tree"
+            if group_dir is not None:
+                msg = "%s for group: %s" % (msg, group_dir)
+            self.append_to_summary("%s<br/>\n" % msg)
+
+    def get_sample_name(self, file_path):
+        # Return the sample part of a file name.
+        base_file_name = os.path.basename(file_path)
+        if base_file_name.find(".") > 0:
+            # Eliminate the extension.
+            return os.path.splitext(base_file_name)[0]
+        return base_file_name
+
+    def get_mq_val(self, record_info, filename):
+        # Get the MQ (gatk) or MQM (freebayes) value
+        # from the record.INFO component of the vcf file.
+        try:
+            mq_val = record_info['MQM']
+            return self.return_val(mq_val)
+        except Exception:
+            try:
+                mq_val = record_info['MQ']
+                return self.return_val(mq_val)
+            except Exception:
+                msg = "Invalid or unsupported vcf header %s in file: %s\n" % (str(record_info), filename)
+                sys.exit(msg)
+
+    def get_parsimonious_df(self, filtered_all_df):
+        # Get the parsimonious SNPs data frame
+        # from a data frame of filtered SNPs.
+        try:
+            ref_series = filtered_all_df.loc['root']
+            # In all_vcf root needs to be removed.
+            filtered_all_df = filtered_all_df.drop(['root'])
+        except KeyError:
+            pass
+        parsimony = filtered_all_df.loc[:, (filtered_all_df != filtered_all_df.iloc[0]).any()]
+        parsimony_positions = list(parsimony)
+        parse_df = filtered_all_df[parsimony_positions]
+        ref_df = ref_series.to_frame()
+        ref_df = ref_df.T
+        parsimonious_df = pandas.concat([parse_df, ref_df], join='inner')
+        return parsimonious_df
+
+    def get_position_list(self, sheet_names, group):
+        # Get a list of positions defined by an excel file.
+        exclusion_list = []
+        try:
+            filter_to_all = pandas.read_excel(self.input_excel, header=1, usecols=[group])
+            for value in filter_to_all.values:
+                value = str(value[0])
+                if "-" not in value.split(":")[-1]:
+                    exclusion_list.append(value)
+                elif "-" in value:
+                    try:
+                        chrom, sequence_range = value.split(":")
+                    except Exception as e:
+                        sys.exit(str(e))
+                    value = sequence_range.split("-")
+                    for position in range(int(value[0].replace(',', '')), int(value[1].replace(',', '')) + 1):
+                        exclusion_list.append(chrom + ":" + str(position))
+            return exclusion_list
+        except ValueError:
+            return []
+
+    def get_snps(self, task_queue, timeout):
+        while True:
+            try:
+                group_dir = task_queue.get(block=True, timeout=timeout)
+            except queue.Empty:
+                break
+            # Parse all vcf files to accumulate
+            # the SNPs into a data frame.
+            positions_dict = {}
+            group_files = []
+            for file_name in os.listdir(os.path.abspath(group_dir)):
+                file_path = os.path.abspath(os.path.join(group_dir, file_name))
+                group_files.append(file_path)
+            for file_name in group_files:
+                found_positions, found_positions_mix = self.find_initial_positions(file_name)
+                positions_dict.update(found_positions)
+            # Order before adding to file to match
+            # with ordering of individual samples.
+            # all_positions is abs_pos:REF
+            self.all_positions = OrderedDict(sorted(positions_dict.items()))
+            ref_positions_df = pandas.DataFrame(self.all_positions, index=['root'])
+            all_map_qualities = {}
+            df_list = []
+            for file_name in group_files:
+                sample_df, file_name_base, sample_map_qualities = self.decide_snps(file_name)
+                df_list.append(sample_df)
+                all_map_qualities.update({file_name_base: sample_map_qualities})
+            all_sample_df = pandas.concat(df_list)
+            # All positions have now been selected for each sample,
+            # so select parisomony informative SNPs.  This removes
+            # columns where all fields are the same.
+            # Add reference to top row.
+            prefilter_df = pandas.concat([ref_positions_df, all_sample_df], join='inner')
+            all_mq_df = pandas.DataFrame.from_dict(all_map_qualities)
+            mq_averages = all_mq_df.mean(axis=1).astype(int)
+            self.gather_and_filter(prefilter_df, mq_averages, group_dir)
+            task_queue.task_done()
+
+    def group_vcfs(self, vcf_files):
+        # Parse an excel file to produce a
+        # grouping dictionary for SNPs.
+        xl = pandas.ExcelFile(self.input_excel)
+        sheet_names = xl.sheet_names
+        ws = pandas.read_excel(self.input_excel, sheet_name=sheet_names[0])
+        defining_snps = ws.iloc[0]
+        defsnp_iterator = iter(defining_snps.iteritems())
+        next(defsnp_iterator)
+        defining_snps = {}
+        inverted_defining_snps = {}
+        for abs_pos, group in defsnp_iterator:
+            if '!' in abs_pos:
+                inverted_defining_snps[abs_pos.replace('!', '')] = group
+            else:
+                defining_snps[abs_pos] = group
+        samples_groups_dict = {}
+        for vcf_file in vcf_files:
+            found_positions, found_positions_mix = self.find_initial_positions(vcf_file)
+            samples_groups_dict = self.bin_input_files(vcf_file, samples_groups_dict, defining_snps, inverted_defining_snps, found_positions, found_positions_mix)
+        # Output summary grouping table.
+        self.append_to_summary('<br/>')
+        self.append_to_summary('<b>Groupings with %d listed:</b><br/>\n' % len(samples_groups_dict))
+        self.append_to_summary('<table  cellpadding="5" cellspaging="5" border="1">\n')
+        for key, value in samples_groups_dict.items():
+            self.append_to_summary('<tr align="left"><th>Sample Name</th>\n')
+            self.append_to_summary('<td>%s</td>' % key)
+            for group in value:
+                self.append_to_summary('<td>%s</td>\n' % group)
+            self.append_to_summary('</tr>\n')
+        self.append_to_summary('</table><br/>\n')
+
+    def initiate_summary(self, output_summary):
+        # Output summary file handle.
+        self.append_to_summary('<html>\n')
+        self.append_to_summary('<head></head>\n')
+        self.append_to_summary('<body style=\"font-size:12px;">')
+        self.append_to_summary("<b>Time started:</b> %s<br/>" % get_time_stamp())
+        self.append_to_summary("<b>Number of VCF inputs:</b> %d<br/>" % self.num_files)
+        self.append_to_summary("<b>Reference:</b> %s<br/>" % self.dbkey)
+        self.append_to_summary("<b>All isolates:</b> %s<br/>" % str(self.all_isolates))
+
+    def return_val(self, val, index=0):
+        # Handle element and single-element list values.
+        if isinstance(val, list):
+            return val[index]
+        return val
+
+    def val_as_int(self, val):
+        # Handle integer value conversion.
+        try:
+            return int(val)
+        except TypeError:
+            # val is likely None here.
+            return 0
+
+
+if __name__ == '__main__':
+
+    parser = argparse.ArgumentParser()
+
+    parser.add_argument('--ac', action='store', dest='ac', type=int, help='Allele count value'),
+    parser.add_argument('--all_isolates', action='store_true', dest='all_isolates', required=False, default=False, help='Create table with all isolates'),
+    parser.add_argument('--input_excel', action='store', dest='input_excel', required=False, default=None, help='Optional Excel filter file'),
+    parser.add_argument('--input_vcf_dir', action='store', dest='input_vcf_dir', help='Input vcf directory'),
+    parser.add_argument('--min_mq', action='store', dest='min_mq', type=int, help='Minimum map quality value'),
+    parser.add_argument('--min_quality_score', action='store', dest='min_quality_score', type=int, help='Minimum quality score value'),
+    parser.add_argument('--output_json_avg_mq_dir', action='store', dest='output_json_avg_mq_dir', help='Output json average mq directory'),
+    parser.add_argument('--output_json_snps_dir', action='store', dest='output_json_snps_dir', help='Output json snps directory'),
+    parser.add_argument('--output_snps_dir', action='store', dest='output_snps_dir', help='Output snps directory'),
+    parser.add_argument('--output_summary', action='store', dest='output_summary', help='Output summary html file'),
+    parser.add_argument('--processes', action='store', dest='processes', type=int, help='Configured processes for job'),
+    parser.add_argument('--quality_score_n_threshold', action='store', dest='quality_score_n_threshold', type=int, help='Minimum quality score N value for alleles'),
+    parser.add_argument('--dbkey', action='store', dest='dbkey', help='Galaxy genome build dbkey'),
+
+    args = parser.parse_args()
+
+    # Build the list of all input zero coverage vcf
+    # files, both the samples and the "database".
+    vcf_files = []
+    for file_name in os.listdir(args.input_vcf_dir):
+        file_path = os.path.abspath(os.path.join(args.input_vcf_dir, file_name))
+        vcf_files.append(file_path)
+
+    multiprocessing.set_start_method('spawn')
+    queue1 = multiprocessing.JoinableQueue()
+    num_files = len(vcf_files)
+    cpus = set_num_cpus(num_files, args.processes)
+    # Set a timeout for get()s in the queue.
+    timeout = 0.05
+
+    # Initialize the snp_finder object.
+    snp_finder = SnpFinder(num_files, args.dbkey, args.input_excel, args.all_isolates, args.ac, args.min_mq, args.quality_score_n_threshold, args.min_quality_score, args.input_vcf_dir, args.output_json_avg_mq_dir, args.output_json_snps_dir, args.output_snps_dir, args.output_summary)
+
+    # Define and make the set of directories into which the input_zc_vcf
+    # files will be placed.  Selected input values (e.g., the use of
+    # an Excel file for grouping and filtering, creating a group with
+    # all isolates) are used to define the directories.
+    vcf_dirs = []
+    if args.input_excel is None:
+        vcf_dirs = setup_all_vcfs(vcf_files, vcf_dirs)
+    else:
+        if args.all_isolates:
+            vcf_dirs = setup_all_vcfs(vcf_files, vcf_dirs)
+        # Parse the Excel file to detemine groups for filtering.
+        snp_finder.group_vcfs(vcf_files)
+        # Append the list of group directories created by
+        # the above call to the set of directories containing
+        # vcf files for analysis.
+        group_dirs = [d for d in os.listdir(os.getcwd()) if os.path.isdir(d) and d in snp_finder.groups]
+        vcf_dirs.extend(group_dirs)
+
+    # Populate the queue for job splitting.
+    for vcf_dir in vcf_dirs:
+        queue1.put(vcf_dir)
+
+    # Complete the get_snps task.
+    processes = [multiprocessing.Process(target=snp_finder.get_snps, args=(queue1, timeout, )) for _ in range(cpus)]
+    for p in processes:
+        p.start()
+    for p in processes:
+        p.join()
+    queue1.join()
+
+    # Finish summary log.
+    snp_finder.append_to_summary("<br/><b>Time finished:</b> %s<br/>\n" % get_time_stamp())
+    total_run_time = datetime.now() - snp_finder.timer_start
+    snp_finder.append_to_summary("<br/><b>Total run time:</b> %s<br/>\n" % str(total_run_time))
+    snp_finder.append_to_summary('</body>\n</html>\n')
+    with open(args.output_summary, "w") as fh:
+        fh.write("%s" % snp_finder.summary_str)