Mercurial > repos > iuc > vsnp_build_tables

comparison vsnp_build_tables.xml @ 1:0bc0009f9ea0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit 6a0c9a857c1f4638ef18e106b1f8c0681303acc5"
author iuc
date Sun, 27 Sep 2020 10:08:14 +0000
parents 5e258fba246c
children efb86aade548
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0:5e258fba246c 1:0bc0009f9ea0
1 <tool id="vsnp_build_tables" name="vSNP: build tables" version="1.0.0"> 1 <tool id="vsnp_build_tables" name="vSNP: build tables" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
2 <description></description> 2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="1.76">biopython</requirement> 7 <requirement type="package" version="1.76">biopython</requirement>
5 <requirement type="package" version="0.25.3">pandas</requirement> 8 <requirement type="package" version="0.25.3">pandas</requirement>
6 <requirement type="package" version="1.2.8">xlsxwriter</requirement> 9 <requirement type="package" version="1.2.8">xlsxwriter</requirement>
7 </requirements> 10 </requirements>
50 #end if 53 #end if
51 #end if 54 #end if
52 ]]></command> 55 ]]></command>
53 <inputs> 56 <inputs>
54 <conditional name="input_type_cond"> 57 <conditional name="input_type_cond">
55 <param name="input_type" type="select" label="Choose the category for the files to be analyzed"> 58 <expand macro="param_input_type"/>
56 <option value="single" selected="true">Single files</option>
57 <option value="collection">Collection of files</option>
58 </param>
59 <when value="single"> 59 <when value="single">
60 <param name="input_snps_json" type="data" format="json" label="SNPs json file"> 60 <param name="input_snps_json" type="data" format="json" label="SNPs json file">
61 <validator type="unspecified_build"/> 61 <validator type="unspecified_build"/>
62 </param> 62 </param>
63 <param name="input_avg_mq_json" type="data" format="json" label="Average MQ json file"> 63 <param name="input_avg_mq_json" type="data" format="json" label="Average MQ json file">
190 **Required Options** 190 **Required Options**
191 191
192 * **Choose the category for the files to be analyzed** - select "Single files" or "Collections of files", then select the appropriate history items (single SNPs json, average MQ json and newick files, or collections of each) based on the selected option. 192 * **Choose the category for the files to be analyzed** - select "Single files" or "Collections of files", then select the appropriate history items (single SNPs json, average MQ json and newick files, or collections of each) based on the selected option.
193 * **Use Genbank file** - Select "yes" to annotate the tables using the information in the Genbank file. Locally cached files, if available, provide the most widely used annotations, but more custom Genbank files can be chosen from the current history. 193 * **Use Genbank file** - Select "yes" to annotate the tables using the information in the Genbank file. Locally cached files, if available, provide the most widely used annotations, but more custom Genbank files can be chosen from the current history.
194 </help> 194 </help>
195 <citations> 195 <expand macro="citations"/>
196 <citation type="bibtex">
197 @misc{None,
198 journal = {None},
199 author = {1. Stuber T},
200 title = {Manuscript in preparation},
201 year = {None},
202 url = {https://github.com/USDA-VS/vSNP},}
203 </citation>
204 </citations>
205 </tool> 196 </tool>
206 197