Mercurial > repos > iuc > vsnp_build_tables
diff vsnp_determine_ref_from_data.py @ 5:b08cc87b2888 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit a80e3713d10fafef22e964198d59251adf955812"
| author | iuc |
|---|---|
| date | Thu, 14 Jan 2021 09:12:14 +0000 |
| parents | efb86aade548 |
| children |
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--- a/vsnp_determine_ref_from_data.py Thu Dec 10 15:25:53 2020 +0000 +++ b/vsnp_determine_ref_from_data.py Thu Jan 14 09:12:14 2021 +0000 @@ -197,12 +197,12 @@ if __name__ == '__main__': parser = argparse.ArgumentParser() - parser.add_argument('--dnaprint_fields', action='append', dest='dnaprint_fields', nargs=2, required=False, default=None, help="List of dnaprints data table value, name and path fields") - parser.add_argument('--read1', action='store', dest='read1', required=True, default=None, help='Required: single read') + parser.add_argument('--dnaprint_fields', action='append', dest='dnaprint_fields', nargs=2, help="List of dnaprints data table value, name and path fields") + parser.add_argument('--read1', action='store', dest='read1', help='Required: single read') parser.add_argument('--read2', action='store', dest='read2', required=False, default=None, help='Optional: paired read') - parser.add_argument('--gzipped', action='store_true', dest='gzipped', default=False, help='Input files are gzipped') - parser.add_argument('--output_dbkey', action='store', dest='output_dbkey', required=True, default=None, help='Output reference file') - parser.add_argument('--output_metrics', action='store', dest='output_metrics', required=True, default=None, help='Output metrics file') + parser.add_argument('--gzipped', action='store_true', dest='gzipped', help='Input files are gzipped') + parser.add_argument('--output_dbkey', action='store', dest='output_dbkey', help='Output reference file') + parser.add_argument('--output_metrics', action='store', dest='output_metrics', help='Output metrics file') args = parser.parse_args()