Mercurial > repos > iuc > vsnp_determine_ref_from_data
diff vsnp_get_snps.py @ 5:a8560decb495 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit 2a94c64d6c7236550bf483d2ffc4e86248c63aab"
| author | iuc |
|---|---|
| date | Tue, 16 Nov 2021 20:12:56 +0000 |
| parents | e3016c6c5994 |
| children | 532a11cdd818 |
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--- a/vsnp_get_snps.py Tue Nov 16 08:28:27 2021 +0000 +++ b/vsnp_get_snps.py Tue Nov 16 20:12:56 2021 +0000 @@ -440,7 +440,7 @@ parser = argparse.ArgumentParser() parser.add_argument('--ac', action='store', dest='ac', type=int, help='Allele count value'), - parser.add_argument('--all_isolates', action='store_true', dest='all_isolates', required=False, default=False, help='Create table with all isolates'), + parser.add_argument('--all_isolates', action='store_true', dest='all_isolates', help='Create table with all isolates'), parser.add_argument('--input_excel', action='store', dest='input_excel', required=False, default=None, help='Optional Excel filter file'), parser.add_argument('--input_vcf_dir', action='store', dest='input_vcf_dir', help='Input vcf directory'), parser.add_argument('--min_mq', action='store', dest='min_mq', type=int, help='Minimum map quality value'),