Mercurial > repos > iuc > vsnp_determine_ref_from_data

changeset 6:532a11cdd818 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsnp commit 10077c740e7cbe6a6563a1c632d711691753e46d"
author iuc
date Mon, 06 Dec 2021 18:29:21 +0000
parents a8560decb495
children 57bd5b859e86
files vsnp_build_tables.py vsnp_get_snps.py
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/vsnp_build_tables.py	Tue Nov 16 20:12:56 2021 +0000
+++ b/vsnp_build_tables.py	Mon Dec 06 18:29:21 2021 +0000
@@ -295,7 +295,7 @@
 
 
 def set_num_cpus(num_files, processes):
-    num_cpus = int(multiprocessing.cpu_count())
+    num_cpus = len(os.sched_getaffinity(0))
     if num_files < num_cpus and num_files < processes:
         return num_files
     if num_cpus < processes:
--- a/vsnp_get_snps.py	Tue Nov 16 20:12:56 2021 +0000
+++ b/vsnp_get_snps.py	Mon Dec 06 18:29:21 2021 +0000
@@ -22,7 +22,7 @@
 
 
 def set_num_cpus(num_files, processes):
-    num_cpus = int(multiprocessing.cpu_count())
+    num_cpus = len(os.sched_getaffinity(0))
     if num_files < num_cpus and num_files < processes:
         return num_files
     if num_cpus < processes: