Mercurial > repos > iyad > package_blast_2_2_26
view tool_dependencies.xml @ 0:8a5a4d8db315 draft default tip
Initial commit - adapted tool_dependencies.xml from Blast Plus 2.2.26 repository
author | iyad |
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date | Mon, 10 Nov 2014 15:11:48 -0500 |
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<?xml version='1.0' encoding='utf-8'?> <tool_dependency> <package name="blast" version="2.2.26"> <install version="1.0"> <actions_group> <!-- Download the binaries for BLAST compatible with 64-bit OSX. --> <actions os="darwin" architecture="x86_64"> <action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-universal-macosx.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST compatible with 32-bit OSX. --> <actions os="darwin" architecture="i386"> <action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-universal-macosx.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST compatible with 64-bit Linux. --> <actions os="linux" architecture="x86_64"> <action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-x64-linux.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST compatible with 32-bit Linux (i386). --> <actions os="linux" architecture="i386"> <action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-ia32-linux.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- Download the binaries for BLAST compatible with 32-bit Linux (i686). --> <actions os="linux" architecture="i686"> <action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-ia32-linux.tar.gz</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> <actions> <action type="download_by_url" target_filename="blast-2.2.26.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-src.tar.gz</action> <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> </actions> <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> </actions_group> </install> <readme> *Authors & Contacts* Iyad Kandalaft | Iyad.Kandalaft@Agr.gc.ca | Agriculture and Agri-Foods Canada Kevin Chen | Agriculture and Agri-Foods Canada *Repository Description* The package_blast_2_2_26 repository downloads and builds the legacy NCBI Blast source code v2.2.26 on various operating systems and architectures. The repository is a modification of the NCBI Blast Plus package. These links provide information for building the legacy NCBI Blast package in most environments. System requirements http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download </readme> </package> </tool_dependency>