Mercurial > repos > jackcurragh > ribogalaxy
changeset 0:dfb484045b7e draft
Uploaded
author | jackcurragh |
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date | Mon, 04 Apr 2022 14:06:57 +0000 |
parents | |
children | ba39548ca273 |
files | bedGraphToBigWig/bedGraphToBigWig bedGraphToBigWig/bedGraphToBigWig.xml bedGraphToBigWig/run_bedgraph_to_bigwig.sh bedGraphToBigWig/test-data/test.bed bedGraphToBigWig/test-data/test.bw bedGraphToBigWig/test-data/test.chrom.sizes |
diffstat | 6 files changed, 6796 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bedGraphToBigWig/bedGraphToBigWig.xml Mon Apr 04 14:06:57 2022 +0000 @@ -0,0 +1,24 @@ +<tool id="bedGraphToBigWig" name="Convert a bed file to a BigWig" version="1.0"> + <description>Converting your ribosome profile bed file to a bigwig which is used for track creation on GWIPS-Viz</description> + <command><![CDATA[ + $__tool_directory__/bedGraphToBigWig ${input1} ${input2} ${output1} + ]]></command> + <inputs> + <param name="input1" type="data" format="bed" label="Bed File" /> + <param name="input2" type="data" format="tabular" label="Chromosome Sizes" /> + </inputs> + <outputs> + <data name="output1" format="bigwig"/> + </outputs> + <tests> + <test> + <param name="input1" value="test.bed" ftype="bed" /> + <param name="input2" value="test.chrom.sizes" ftype="tabular" /> + <output name="output1" file="test.bw" ftype="bigwig" lines_diff="4" /> + </test> + </tests> + <help> + + </help> + <citations/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bedGraphToBigWig/run_bedgraph_to_bigwig.sh Mon Apr 04 14:06:57 2022 +0000 @@ -0,0 +1,2 @@ +#!usr/bin/env bash +
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