Mercurial > repos > jackcurragh > ribogalaxy_bedtools_genomcov

comparison bedtools_genomecov/genomeCoverageBed.xml @ 14:163cc2b61d5e draft default tip

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author jackcurragh
date Fri, 27 Jan 2023 11:09:33 +0000
parents e956573b9f5a
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13:e956573b9f5a 14:163cc2b61d5e
30 #end if 30 #end if
31 $d 31 $d
32 $dz 32 $dz
33 $five 33 $five
34 $three 34 $three
35 > '$output' 35 | sort -k1,1 -k2,2n > '$output'
36 ]]> 36 ]]>
37 37 </command>
38 LC_COLLATE=C
39 sort -k1,1 -k2,2n '$output' > '${output}.tmp' && mv '${output}.tmp' '$output'</command>
40 <inputs> 38 <inputs>
41 <conditional name="input_type"> 39 <conditional name="input_type">
42 <param name="input_type_select" type="select" label="Input type"> 40 <param name="input_type_select" type="select" label="Input type">
43 <option value="bed">@STD_BEDTOOLS_INPUT_LABEL@</option> 41 <option value="bed">@STD_BEDTOOLS_INPUT_LABEL@</option>
44 <option value="bam" selected='true'>BAM</option> 42 <option value="bam" selected='true'>BAM</option>