Mercurial > repos > jackcurragh > ribogalaxy_bedtools_genomcov

diff bedtools_genomecov/genomeCoverageBed.xml @ 14:163cc2b61d5e draft default tip

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author jackcurragh
date Fri, 27 Jan 2023 11:09:33 +0000
parents e956573b9f5a
children
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--- a/bedtools_genomecov/genomeCoverageBed.xml	Fri Jan 27 11:01:08 2023 +0000
+++ b/bedtools_genomecov/genomeCoverageBed.xml	Fri Jan 27 11:09:33 2023 +0000
@@ -32,11 +32,9 @@
 $dz
 $five
 $three
-> '$output'
+| sort -k1,1 -k2,2n > '$output'
     ]]>
-    
-    LC_COLLATE=C
-    sort -k1,1 -k2,2n '$output' > '${output}.tmp' && mv '${output}.tmp' '$output'</command>
+</command>
     <inputs>
         <conditional name="input_type">
             <param name="input_type_select" type="select" label="Input type">