Mercurial > repos > jackcurragh > ribogalaxy_bedtools_genomcov

changeset 14:163cc2b61d5e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jackcurragh
date Fri, 27 Jan 2023 11:09:33 +0000
parents e956573b9f5a
children
files bedtools_genomecov/genomeCoverageBed.xml bedtools_genomecov/macros.xml
diffstat 2 files changed, 3 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/bedtools_genomecov/genomeCoverageBed.xml	Fri Jan 27 11:01:08 2023 +0000
+++ b/bedtools_genomecov/genomeCoverageBed.xml	Fri Jan 27 11:09:33 2023 +0000
@@ -32,11 +32,9 @@
 $dz
 $five
 $three
-> '$output'
+| sort -k1,1 -k2,2n > '$output'
     ]]>
-    
-    LC_COLLATE=C
-    sort -k1,1 -k2,2n '$output' > '${output}.tmp' && mv '${output}.tmp' '$output'</command>
+</command>
     <inputs>
         <conditional name="input_type">
             <param name="input_type_select" type="select" label="Input type">
--- a/bedtools_genomecov/macros.xml	Fri Jan 27 11:01:08 2023 +0000
+++ b/bedtools_genomecov/macros.xml	Fri Jan 27 11:09:33 2023 +0000
@@ -10,7 +10,7 @@
             <xref type="bio.tools">bedtools</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.30.2</token>
+    <token name="@TOOL_VERSION@">2.30.3</token>
     <token name="@SAMTOOLS_VERSION@">1.9</token>
     <token name="@STD_BEDTOOLS_INPUTS@">bed,bedgraph,gff,vcf,encodepeak</token>
     <token name="@STD_BEDTOOLS_INPUT_LABEL@">BED/bedGraph/GFF/VCF/EncodePeak</token>