# HG changeset patch
# User jackcurragh
# Date 1675980074 0
# Node ID 9948819cc36a3d40d54e295a3ab27b3a66789d3f
# Parent  074adb20886d30aa136182c60a04c612a48b0826
Uploaded

diff -r 074adb20886d -r 9948819cc36a bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml
--- a/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Thu Feb 09 21:52:09 2023 +0000
+++ b/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Thu Feb 09 22:01:14 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtie_trans_wrapper" name="Bowtie Transcriptome Alignment" version="1.1">
+<tool id="bowtie_trans_wrapper" name="Bowtie Transcriptome Alignment" version="1.1.1">
   <description>Align to Transcriptome using Bowtie</description>
   <requirements>
     <requirement type="package" version="1.2.0">bowtie</requirement>
@@ -162,7 +162,7 @@
       </param>
       <when value="indexed">
         <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
-          <options from_data_table="bowtie_tran_indexes">
+          <options from_data_table="bowtie_transcriptome_indexes">
             <filter type="sort_by" column="2" />
             <validator type="no_options" message="No indexes are available" />
           </options>
@@ -431,7 +431,7 @@
         <conditional name="refGenomeSource.genomeSource">
           <when value="indexed">
             <action type="metadata" name="dbkey">
-              <option type="from_data_table" name="bowtie_tran_indexes" column="1" offset="0">
+              <option type="from_data_table" name="bowtie_transcriptome_indexes" column="1" offset="0">
                 <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/>
                 <filter type="param_value" ref="refGenomeSource.index" column="0"/>
               </option>
diff -r 074adb20886d -r 9948819cc36a bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample
--- a/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Thu Feb 09 21:52:09 2023 +0000
+++ b/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Thu Feb 09 22:01:14 2023 +0000
@@ -1,7 +1,7 @@
 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 <tables>
     <!-- Locations of indexes in the Bowtie mapper format -->
-    <table name="bowtie_tran_indexes" comment_char="#">
+    <table name="bowtie_transcriptome_indexes" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/bowtie_transcriptome_indexes.loc" />
     </table>