Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome
comparison bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml @ 16:bff7f8f0ba98 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Thu, 09 Feb 2023 14:25:30 +0000 |
| parents | 9bef8486912e |
| children | 816d9c5ef4a8 |
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| 15:9bef8486912e | 16:bff7f8f0ba98 |
|---|---|
| 1 <tool id="bowtie_transcriptomic_wrapper" name="Bowtie Transcriptome Alignment" version="1.7.1"> | 1 <tool id="bowtie_transcriptomic_wrapper" name="Bowtie Transcriptome Alignment" version="1.7.2"> |
| 2 <description>Align to Transcriptome using Bowtie</description> | 2 <description>Align to Transcriptome using Bowtie</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.2.0">bowtie</requirement> | 4 <requirement type="package" version="1.2.0">bowtie</requirement> |
| 5 <requirement type="package" version="1.13">samtools</requirement> | 5 <requirement type="package" version="1.13">samtools</requirement> |
| 6 | 6 |
| 160 <option value="indexed">Use a built-in index</option> | 160 <option value="indexed">Use a built-in index</option> |
| 161 <option value="history">Use one from the history</option> | 161 <option value="history">Use one from the history</option> |
| 162 </param> | 162 </param> |
| 163 <when value="indexed"> | 163 <when value="indexed"> |
| 164 <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> | 164 <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> |
| 165 <options from_data_table="bowtie_transcriptome_indexes_2"> | 165 <options from_data_table="bowtie_transcriptome_indexes"> |
| 166 <filter type="sort_by" column="2" /> | 166 <filter type="sort_by" column="2" /> |
| 167 <validator type="no_options" message="No indexes are available" /> | 167 <validator type="no_options" message="No indexes are available" /> |
| 168 </options> | 168 </options> |
| 169 </param> | 169 </param> |
| 170 </when> | 170 </when> |