Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome
comparison bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml @ 2:cd79614871c2 draft
index table name has changed
absolute path to indexes are added
| author | triasteran |
|---|---|
| date | Sun, 27 Mar 2022 16:22:48 +0000 |
| parents | 14fb4b4872e3 |
| children | 14deb381fa27 |
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| 1:14fb4b4872e3 | 2:cd79614871c2 |
|---|---|
| 1 <tool id="bowtie_transcriptomic_wrapper" name="Align to transcriptome using Bowtie" version="1.2.0"> | 1 <tool id="bowtie_transcriptomic_wrapper" name="Align to transcriptome using Bowtie" version="1.3.0ind"> |
| 2 <description></description> | 2 <description></description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.2.0">bowtie</requirement> | 4 <requirement type="package" version="1.2.0">bowtie</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <version_command>bowtie --version</version_command> | 6 <version_command>bowtie --version</version_command> |
| 158 <option value="indexed">Use a built-in index</option> | 158 <option value="indexed">Use a built-in index</option> |
| 159 <option value="history">Use one from the history</option> | 159 <option value="history">Use one from the history</option> |
| 160 </param> | 160 </param> |
| 161 <when value="indexed"> | 161 <when value="indexed"> |
| 162 <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> | 162 <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> |
| 163 <options from_data_table="bowtie_indexes"> | 163 <options from_data_table="bowtie_indexes_transcriptome"> |
| 164 <filter type="sort_by" column="2" /> | 164 <filter type="sort_by" column="2" /> |
| 165 <validator type="no_options" message="No indexes are available" /> | 165 <validator type="no_options" message="No indexes are available" /> |
| 166 </options> | 166 </options> |
| 167 </param> | 167 </param> |
| 168 </when> | 168 </when> |