Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome
changeset 9:15e6eb67d710 draft
Uploaded
author | jackcurragh |
---|---|
date | Fri, 27 May 2022 10:12:05 +0000 |
parents | f6ef1c85b045 |
children | 5f3a3790cc79 |
files | bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample |
diffstat | 2 files changed, 14 insertions(+), 12 deletions(-) [+] |
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--- a/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml Fri May 13 09:53:29 2022 +0000 +++ b/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml Fri May 27 10:12:05 2022 +0000 @@ -1,7 +1,9 @@ -<tool id="bowtie_transcriptomic_wrapper" name="Align to transcriptome using Bowtie" version="1.3.0"> - <description></description> +<tool id="bowtie_transcriptomic_wrapper" name="Bowtie Transcriptome Alignment" version="1.4.0"> + <description>Align to Transcriptome using Bowtie</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> + <requirement type="package" version="1.13">samtools</requirement> + </requirements> <version_command>bowtie --version</version_command> <command>
--- a/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample Fri May 13 09:53:29 2022 +0000 +++ b/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample Fri May 27 10:12:05 2022 +0000 @@ -1,10 +1,10 @@ -homo_sapiens_gencode39 hg_gen39 Homo sapiens (gencode 39) Transcriptome /data2/indices/bowtie/transcriptome/homo_sapiens_gencode39/homo_sapiens_gencode39_transcriptome -homo_sapiens_gencode28 hg_gen28 Homo sapiens (gencode 28) Transcriptome /data2/indices/bowtie/transcriptome/homo_sapiens_gencode28/homo_sapiens_gencode28_transcriptome -mus_musculus_m28 m28 Mus musculus (m28) Transcriptome /data2/indices/bowtie/transcriptome/mus_musculus_m28/mus_musculus_m28_transcriptome -mus_musculus_m10 m10 Mus musculus (m10) Transcriptome /data2/indices/bowtie/transcriptome/mus_musculus_m10/mus_musculus_m10_transcriptome -drosophila_melanogaster_dm3 dm3 Drosophila melanogaster (dm3) Transcriptome /data2/indices/bowtie/transcriptome/drosophila_melanogater_dm3/drosophila_melanogater_dm3_transcriptome -drosophila_melanogaster_dm6 dm6 Drosophila melanogaster (dm6) Transcriptome /data2/indices/bowtie/transcriptome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_transcriptome -sacCer_9 sacCer9 Saccharomyces cerevisiae (v9) Transcriptome /data2/indices/bowtie/transcriptome/sacCer_9/sacCer_9_transcriptome -sarCer_3 sacCer3 Saccharomyces cerevisiae (v3) Transcriptome /data2/indices/bowtie/transcriptome/sacCer_3/sacCer_3_transcriptome -E_coli_K12_MG1655 e_coli Escherichia coli (K12 MG1655) Transcriptome /data2/indices/bowtie/transcriptome/E_coli_K12_MG1655/E_coli_K12_MG1655_transcriptome -Arabidopsis araThal Arabidopsis thaliana (TAIR10) Transcriptome /data2/indices/bowtie/transcriptome/Arabidopsis/Arabidopsis_transcriptome +homo_sapiens_gencode39 hg_gen39 Homo sapiens (gencode 39) Transcriptome /mnt/data/indices/bowtie/transcriptome/homo_sapiens_gencode39/homo_sapiens_gencode39_transcriptome +homo_sapiens_gencode28 hg_gen28 Homo sapiens (gencode 28) Transcriptome /mnt/data/indices/bowtie/transcriptome/homo_sapiens_gencode28/homo_sapiens_gencode28_transcriptome +mus_musculus_m28 m28 Mus musculus (m28) Transcriptome /mnt/data/indices/bowtie/transcriptome/mus_musculus_m28/mus_musculus_m28_transcriptome +mus_musculus_m10 m10 Mus musculus (m10) Transcriptome /mnt/data/indices/bowtie/transcriptome/mus_musculus_m10/mus_musculus_m10_transcriptome +drosophila_melanogaster_dm3 dm3 Drosophila melanogaster (dm3) Transcriptome /mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm3/drosophila_melanogater_dm3_transcriptome +drosophila_melanogaster_dm6 dm6 Drosophila melanogaster (dm6) Transcriptome /mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_transcriptome +sacCer_9 sacCer9 Saccharomyces cerevisiae (v9) Transcriptome /mnt/data/indices/bowtie/transcriptome/sacCer_9/sacCer_9_transcriptome +sarCer_3 sacCer3 Saccharomyces cerevisiae (v3) Transcriptome /mnt/data/indices/bowtie/transcriptome/sacCer_3/sacCer_3_transcriptome +E_coli_K12_MG1655 e_coli Escherichia coli (K12 MG1655) Transcriptome /mnt/data/indices/bowtie/transcriptome/E_coli_K12_MG1655/E_coli_K12_MG1655_transcriptome +Arabidopsis araThal Arabidopsis thaliana (TAIR10) Transcriptome /mnt/data/indices/bowtie/transcriptome/Arabidopsis/Arabidopsis_transcriptome