Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome

changeset 14:5a466ce7d211 draft

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author jackcurragh
date Thu, 09 Feb 2023 13:27:26 +0000
parents ea4b7b114675
children 9bef8486912e
files bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample
diffstat 3 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Thu Feb 09 13:08:19 2023 +0000
+++ b/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Thu Feb 09 13:27:26 2023 +0000
@@ -162,7 +162,7 @@
       </param>
       <when value="indexed">
         <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
-          <options from_data_table="bowtie_transcriptome_indexes">
+          <options from_data_table="bowtie_transcriptome_indexes_2">
             <filter type="sort_by" column="2" />
             <validator type="no_options" message="No indexes are available" />
           </options>
--- a/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample	Thu Feb 09 13:08:19 2023 +0000
+++ b/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample	Thu Feb 09 13:27:26 2023 +0000
@@ -3,7 +3,7 @@
 homo_sapiens_gencode25	hg_gen25	Homo sapiens (gencode 25) Transcriptome	/mnt/data/indices/bowtie/transcriptome/homo_sapiens_gencode25/homo_sapiens_gencode25_transcriptome
 mus_musculus_m28	m28	Mus musculus (m28) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m28/mus_musculus_m28_transcriptome
 mus_musculus_m25	m25	Mus musculus (m25) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m25/mus_musculus_m25_transcriptome
-mus_musculus_m14	m14	Mus musculus (m14) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m10/mus_musculus_m14_transcriptome
+mus_musculus_m14	m14	Mus musculus (m14) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m14/mus_musculus_m14_transcriptome
 mus_musculus_m10	m10	Mus musculus (m10) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m10/mus_musculus_m10_transcriptome
 drosophila_melanogaster_dm3	dm3	Drosophila melanogaster (dm3) Transcriptome	/mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm3/drosophila_melanogater_dm3_transcriptome
 drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Transcriptome	/mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_transcriptome
--- a/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Thu Feb 09 13:08:19 2023 +0000
+++ b/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Thu Feb 09 13:27:26 2023 +0000
@@ -1,7 +1,7 @@
 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 <tables>
     <!-- Locations of indexes in the Bowtie mapper format -->
-    <table name="bowtie_transcriptome_indexes" comment_char="#">
+    <table name="bowtie_transcriptome_indexes_2" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/bowtie_transcriptome_indexes.loc" />
     </table>