--- a/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Thu Feb 09 14:37:14 2023 +0000
+++ b/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Fri Feb 10 09:14:27 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtie_transcriptomic_wrapper" name="Bowtie Transcriptome Alignment" version="1.7.4">
+<tool id="bowtie_trans_wrapper" name="Bowtie Transcriptome Alignment" version="1.7.5">
   <description>Align to Transcriptome using Bowtie</description>
   <requirements>
     <requirement type="package" version="1.2.0">bowtie</requirement>
@@ -162,7 +162,7 @@
       </param>
       <when value="indexed">
         <param name="index" type="select" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
-          <options from_data_table="bowtie_transcriptome_indexes">
+          <options from_data_table="bowtie_transcriptome_indexes_3">
             <filter type="sort_by" column="2" />
             <validator type="no_options" message="No indexes are available" />
           </options>
@@ -431,7 +431,7 @@
         <conditional name="refGenomeSource.genomeSource">
           <when value="indexed">
             <action type="metadata" name="dbkey">
-              <option type="from_data_table" name="bowtie_transcriptome_indexes" column="1" offset="0">
+              <option type="from_data_table" name="bowtie_transcriptome_indexes_3" column="1" offset="0">
                 <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/>
                 <filter type="param_value" ref="refGenomeSource.index" column="0"/>
               </option>

--- a/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample	Thu Feb 09 14:37:14 2023 +0000
+++ b/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample	Fri Feb 10 09:14:27 2023 +0000
@@ -2,6 +2,7 @@
 homo_sapiens_gencode28	hg_gen28	Homo sapiens (gencode 28) Transcriptome	/mnt/data/indices/bowtie/transcriptome/homo_sapiens_gencode28/homo_sapiens_gencode28_transcriptome
 homo_sapiens_gencode25	hg_gen25	Homo sapiens (gencode 25) Transcriptome	/mnt/data/indices/bowtie/transcriptome/homo_sapiens_gencode25/homo_sapiens_gencode25_transcriptome
 mus_musculus_m28	m28	Mus musculus (m28) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m28/mus_musculus_m28_transcriptome
+mus_musculus_m14	m14	Mus musculus (m14) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m14/mus_musculus_m14_transcriptome
 mus_musculus_m10	m10	Mus musculus (m10) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m10/mus_musculus_m10_transcriptome
 drosophila_melanogaster_dm3	dm3	Drosophila melanogaster (dm3) Transcriptome	/mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm3/drosophila_melanogater_dm3_transcriptome
 drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Transcriptome	/mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_transcriptome
@@ -9,5 +10,3 @@
 sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Transcriptome	/mnt/data/indices/bowtie/transcriptome/sacCer_3/sacCer_3_transcriptome
 E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Transcriptome	/mnt/data/indices/bowtie/transcriptome/E_coli_K12_MG1655/E_coli_K12_MG1655_transcriptome
 Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Transcriptome	/mnt/data/indices/bowtie/transcriptome/Arabidopsis/Arabidopsis_transcriptome
-mus_musculus_m25	m_gen14	Mus musculus (m14) Transcriptome	/mnt/data/indices/bowtie/transcriptome/mus_musculus_m14/mus_musculus_m14_transcriptome
-

--- a/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Thu Feb 09 14:37:14 2023 +0000
+++ b/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Fri Feb 10 09:14:27 2023 +0000
@@ -1,7 +1,7 @@
 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 <tables>
     <!-- Locations of indexes in the Bowtie mapper format -->
-    <table name="bowtie_transcriptome_indexes" comment_char="#">
+    <table name="bowtie_transcriptome_indexes_3" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/bowtie_transcriptome_indexes.loc" />
     </table>