Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome

changeset 6:c9c772693fdd draft

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author jackcurragh
date Wed, 20 Apr 2022 15:20:55 +0000
parents 8a0ad8e1e0d4
children d57209761277
files bowtie_transcriptome_wrapper/tool-data/bowtie_indices.loc.sample bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample
diffstat 2 files changed, 6 insertions(+), 6 deletions(-) [+]
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--- a/bowtie_transcriptome_wrapper/tool-data/bowtie_indices.loc.sample	Mon Apr 11 13:11:47 2022 +0000
+++ b/bowtie_transcriptome_wrapper/tool-data/bowtie_indices.loc.sample	Wed Apr 20 15:20:55 2022 +0000
@@ -1,10 +1,10 @@
-homo_sapiens_gencode39	hg_gen39	Homo sapiens (genocode 39)	/data2/indices/bowtie/transcriptome/homo_sapiens_gencode39_transcriptome
-homo_sapiens_gencode28	hg_gen28	Homo sapiens (genocode 28)	/data2/indices/bowtie/transcriptome/homo_sapiens_gencode39_transcriptome
+homo_sapiens_gencode39	hg_gen39	Homo sapiens (genocode 39)	/data2/indices/bowtie/transcriptome/homo_sapiens_gencode39/homo_sapiens_gencode39_transcriptome
+homo_sapiens_gencode28	hg_gen28	Homo sapiens (genocode 28)	/data2/indices/bowtie/transcriptome/homo_sapiens_gencode28/homo_sapiens_gencode28_transcriptome
 mus_musculus_m28	m28	Mus musculus (m28)	/data2/indices/bowtie/transcriptome/mus_musculus_m28/mus_musculus_m28_transcriptome
 mus_musculus_m10	m10	Mus musculus (m10)	/data2/indices/bowtie/transcriptome/mus_musculus_m10/mus_musculus_m10_transcriptome
-drosophila_melanogaster_dm3	dm3	Drosophila melanogaster (dm3)	/data2/indices/bowtie/transcriptome/drosophila_melanogater_dm3_transcriptome
-drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6)	/data2/indices/bowtie/transcriptome/drosophila_melanogater_dm6_transcriptome
+drosophila_melanogaster_dm3	dm3	Drosophila melanogaster (dm3)	/data2/indices/bowtie/transcriptome/drosophila_melanogater_dm3/drosophila_melanogater_dm3_transcriptome
+drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6)	/data2/indices/bowtie/transcriptome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_transcriptome
 sacCer_9	sacCer9	Saccharomyces cerevisiae (v9)	/data2/indices/bowtie/transcriptome/sacCer_9/sacCer_9_transcriptome
 sarCer_3	sacCer3	Saccharomyces cerevisiae (v3)	/data2/indices/bowtie/transcriptome/sacCer_3/sacCer_3_transcriptome
-E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655)	/data2/indices/bowtie/transcriptome/E_coli_K12_MG1655_transcriptome
+E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655)	/data2/indices/bowtie/transcriptome/E_coli_K12_MG1655/E_coli_K12_MG1655_transcriptome
 Arabidopsis	araThal	Arabidopsis thaliana (TAIR10)	/data2/indices/bowtie/transcriptome/Arabidopsis/Arabidopsis_transcriptome
--- a/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Mon Apr 11 13:11:47 2022 +0000
+++ b/bowtie_transcriptome_wrapper/tool_data_table_conf.xml.sample	Wed Apr 20 15:20:55 2022 +0000
@@ -1,7 +1,7 @@
 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 <tables>
     <!-- Locations of indexes in the Bowtie mapper format -->
-    <table name="bowtie_indexes" comment_char="#">
+    <table name="bowtie_transcriptome_indexes" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/bowtie_indices.loc" />
     </table>