Mercurial > repos > jackcurragh > ribogalaxy_create_ribosome_profile

comparison create_ribosome_profile/create_ribosome_profile.xml @ 10:65fd47e945fe draft default tip

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author triasteran
date Tue, 14 Feb 2023 12:25:12 +0000
parents 11e3691f9260
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9:11e3691f9260 10:65fd47e945fe
1 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.1a"> 1 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.1b">
2 <description>Produce a Sorted BED File of A-Site profiles of RPFs.</description> 2 <description>Produce a Sorted BED File of A-Site profiles of RPFs.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.79">biopython</requirement> 4 <requirement type="package" version="1.79">biopython</requirement>
5 <requirement type="package" version="0.19.0">pysam</requirement> 5 <requirement type="package" version="0.19.0">pysam</requirement>
6 </requirements> 6 </requirements>
19 <option value="builtin">Use a built-in FASTA</option> 19 <option value="builtin">Use a built-in FASTA</option>
20 <option value="history">Use one from the history</option> 20 <option value="history">Use one from the history</option>
21 </param> 21 </param>
22 <when value="builtin"> 22 <when value="builtin">
23 <param name="input1_builtin" type="select" format="fasta" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team"> 23 <param name="input1_builtin" type="select" format="fasta" label="Select a reference" help="if your reference of interest is not listed - contact RiboGalaxy team">
24 <options from_data_table="builtin_fastas2"> 24 <options from_data_table="builtin_fastas3">
25 <filter type="sort_by" column="2" /> 25 <filter type="sort_by" column="2" />
26 <validator type="no_options" message="No built-ins are available" /> 26 <validator type="no_options" message="No built-ins are available" />
27 </options> 27 </options>
28 </param> 28 </param>
29 </when> 29 </when>