Mercurial > repos > jackcurragh > ribogalaxy_create_ribosome_profile

comparison create_ribosome_profile/create_ribosome_profile.xml @ 6:8f8affaa5eb4 draft

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author jackcurragh
date Wed, 18 May 2022 12:07:33 +0000
parents 4d69f7428243
children e192ee3be074
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5:4d69f7428243 6:8f8affaa5eb4
10 #else: 10 #else:
11 ${refGenomeSource.input1_file} none ${input4} ${output1} 11 ${refGenomeSource.input1_file} none ${input4} ${output1}
12 #end if 12 #end if
13 </command> 13 </command>
14 <inputs> 14 <inputs>
15 <param name="input1" type="data" format="bam" label="BAM file to process"/>
16 <param name="input2" type="integer" value="15" label="Offset to use" help="Use 15 for elongating ribosomes, 12 for initiating and 0 form RNA-seq reads"/>
15 <conditional name="refGenomeSource"> 17 <conditional name="refGenomeSource">
16 <param name="input1" type="data" format="bam" label="BAM file to process"/>
17 <param name="input2" type="integer" value="15" label="Offset to use" help="Use 15 for elongating ribosomes, 12 for initiating and 0 form RNA-seq reads"/>
18 <param name="genomeSource" type="select" label="Will you select a reference from your history or use a built-in FASTA?"> 18 <param name="genomeSource" type="select" label="Will you select a reference from your history or use a built-in FASTA?">
19 <option value="builtin">Use a built-in FASTA</option> 19 <option value="builtin">Use a built-in FASTA</option>
20 <option value="history">Use one from the history</option> 20 <option value="history">Use one from the history</option>
21 </param> 21 </param>
22 <when value="builtin"> 22 <when value="builtin">