Mercurial > repos > jackcurragh > ribogalaxy_create_ribosome_profile

comparison create_ribosome_profile/create_ribosome_profile.xml @ 8:c2472a4400ef draft

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author jackcurragh
date Fri, 27 May 2022 10:12:34 +0000
parents e192ee3be074
children 11e3691f9260
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7:e192ee3be074 8:c2472a4400ef
1 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.1"> 1 <tool id="create_ribosome_profiles" name="Create Ribosome Profiles" version="1.1">
2 <description>Produce a sorted bed file of A-Site profiles of RPFs.</description> 2 <description>Produce a Sorted BED File of A-Site profiles of RPFs.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.79">biopython</requirement> 4 <requirement type="package" version="1.79">biopython</requirement>
5 <requirement type="package" version="0.19.0">pysam</requirement> 5 <requirement type="package" version="0.19.0">pysam</requirement>
6 </requirements> 6 </requirements>
7 <command>python $__tool_directory__/bam_to_ribosome_profile.py ${input1} ${input2} $refGenomeSource.genomeSource 7 <command>python $__tool_directory__/bam_to_ribosome_profile.py ${input1} ${input2} $refGenomeSource.genomeSource