Mercurial > repos > jackcurragh > ribogalaxy_create_ribosome_profile

diff create_ribosome_profile/create_ribosome_profile.xml @ 1:e97985309423 draft

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author jackcurragh
date Wed, 20 Apr 2022 15:08:26 +0000
parents 06b01eb16c4e
children f55468c622fa
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line diff
--- a/create_ribosome_profile/create_ribosome_profile.xml	Mon Apr 04 09:58:52 2022 +0000
+++ b/create_ribosome_profile/create_ribosome_profile.xml	Wed Apr 20 15:08:26 2022 +0000
@@ -4,7 +4,7 @@
         <requirement type="package" version="1.79">biopython</requirement>
         <requirement type="package" version="0.19.0">pysam</requirement>
     </requirements>
-    <command>python $__tool_directory__/bam_to_ribosome_profile.py ${input1} ${input2} ${input3} ${input4}</command>
+    <command>python $__tool_directory__/bam_to_ribosome_profile.py ${input1} ${input2} ${input3} ${input4} ${output1}</command>
     <inputs>
         <param name="input1" type="data" format="bam" label="BAM file to process"/>
         <param name="input2" type="integer" value="15" label="Offset to use" help="Use 15 for elongating ribosomes, 12 for initiating and 0 form RNA-seq reads"/>