# HG changeset patch # User jackcurragh # Date 1649841328 0 # Node ID 60b449221e6a0ff486e6987a9c9d4d48f2a59c57 Uploaded diff -r 000000000000 -r 60b449221e6a cutadapt.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cutadapt.xml Wed Apr 13 09:15:28 2022 +0000 @@ -0,0 +1,1371 @@ + + Remove adapter sequences from FASTQ/FASTA + + macros.xml + + + + + cutadapt --version + + report.txt +#end if + ]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
+ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+ + +
+ + + + + [0-9,]+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + [A-Za-z0-9 =-_/+]+ + + + + + + + + + + + + [A-Za-z0-9 {}=_]+ + + +
+ + + + + + + + + + + + + +
+ + + + library['type'] != 'paired_collection' and 'multiple_output' not in output_selector + + + + + library['type'] == 'paired' and 'multiple_output' not in output_selector + + + + + library['type'] == 'paired_collection' and 'multiple_output' not in output_selector + + + + + + output_selector and 'report' in output_selector + + + output_selector and 'info_file' in output_selector + + + + output_selector and 'rest_file' in output_selector + + + + + output_selector and 'wildcard_file' in output_selector + + + + output_selector and 'untrimmed_file' in output_selector + + + + library['type'] == 'paired' or library['type'] == 'paired_collection' + output_selector and 'untrimmed_file' in output_selector + + + + + output_selector and 'too_short_file' in output_selector + + + + library['type'] == 'paired' or library['type'] == 'paired_collection' + output_selector and 'too_short_file' in output_selector + + + + output_selector and 'too_long_file' in output_selector + + + + library['type'] == 'paired' or library['type'] == 'paired_collection' + output_selector and 'too_long_file' in output_selector + + + + output_selector and 'json_stats' in output_selector + + + + output_selector and 'multiple_output' in output_selector + + + + + + + + +
+ + + + + + +
+ +
+ + + + +
+ + + + + + +
+ +
+ + + + + +
+ + + + + + +
+
+ + + + + + +
+ + + + + + + + + + +
+ + + + + + + + + +
+ + + + + + +
+
+ + + + + + +
+ + + + + + + + + + + + +
+ + + + +
+ + + + + + +
+ +
+ + + +
+ + + + + + +
+
+ +
+ + + + +
+ + + +
+ + + + + + +
+ + + + +
+ + + + +
+ + + + + + +
+ + +
+ + + + +
+ + + + + + +
+ + + + + + + + +
+ + + + + + +
+ + + + + + + + + + + + + + +
+
+ + + + + + + + + +
+ + + + + +
+ + + + + + +
+
+ + + + + + + + + +
+ + + + + +
+ + + + + + +
+ + + +
+ + + + +
+ + + + + + +
+ + + + +
+ + + + + +
+ + + + + + +
+
+ + + + + + +
+
+ + + + + +
+ + + + + + +
+ + + + +
+ + + + + + + +
+ +
+ + + + +
+ + + + + + + +
+
+ +
+ + + + + +
+ + + + +
+ + + + + + +
+
+ +
+ +
+ + + +
+ + + + + + +
+
+ +
+ +
+ + + +
+ + + + + + +
+
+ +
+ +
+ + + +
+ + + + + + +
+
+ +
+ +
+ + + + +
+ + + + + + +
+
+ +
+ +
+ + + + + +
+ + + + + + +
+
+ + + + + + +
+
+ + + + + + +
+ + + + + + +
+ + + + + +
+ + + + + + +
+
+ + + + + + +
+
+ + + + + + +
+ + + + + + +
+ + + + + +
+ + + + + + +
+
+ + + + + + +
+
+ + + + + + + +
+ + + + + + + +
+ + + + +
+ + + + + + +
+
+ + + + + + +
+
+ + + + + + + +
+ + + + + + + +
+ + + + +
+ + + + + + +
+
+ + + + + +
+ +
+ + + +
+ + + + + + +
+
+ + + + + +
+ +
+ + + + +
+ + + + + + +
+
+ +
+ +
+ + + + +
+ + + + + + +
+
+ +
+ + + + +
+ + + + +
+ + + + + + +
+
+ + + + + + +
+
+ +
+ + + + + +
+ + + +
+ + + + + + +
+
+ +
+ + + + +
+ + + + + + + + + +
+ + + + + + + +
+
+ + + + + + + +
+ + + + +
+ + + + + + + + + + +
+ + + + + + +
+
+ + + + + + + +
+ + + + +
+
+ + + + ]]> + +