Mercurial > repos > jackcurragh > ribogalaxy_generate_custom_track

comparison generate_custom_track/construct_custom_track.py @ 0:aedc582b98aa draft

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author jackcurragh
date Fri, 23 Sep 2022 13:11:37 +0000
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children f46c581ca166
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-1:000000000000 0:aedc582b98aa
1 import sys
2
3 def main(track_type, url, sample_name, sample_description, chromosome_position, outpath):
4
5 with open(outpath, 'w') as f:
6 f. write(f"""
7 browser position {chromosome_position}
8 track type={track_type} name="{sample_name}" description="{sample_description}" bigDataUrl={url}
9 """)
10
11 if __name__ == "__main__":
12 track_type = sys.argv[1]
13 url = sys.argv[2]
14 sample_name = sys.argv[3]
15 sample_description = sys.argv[4]
16 chromosome_position = sys.argv[5]
17 outpath = sys.argv[6]
18 main(track_type, url, sample_name, sample_description, chromosome_position, outpath)