Mercurial > repos > jackcurragh > ribogalaxy_generate_custom_track
comparison generate_custom_track/generate_custom_track.xml @ 0:aedc582b98aa draft
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| author | jackcurragh |
|---|---|
| date | Fri, 23 Sep 2022 13:11:37 +0000 |
| parents | |
| children | 02ba4bc97345 |
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| -1:000000000000 | 0:aedc582b98aa |
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| 1 <tool id="generate-custom_track" name="Generate Custom Track" version="0.1"> | |
| 2 <description>Generates a Custom Track File for GWIPS-viz.</description> | |
| 3 <command> | |
| 4 python construct_custom_track.py $input1 $input2 "$input3" "$input4" | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="input1" type="select" label="File Type"> | |
| 9 <option value="bigWig" selected="True">bigWig</option> | |
| 10 <option value="bigBed">bigBed</option> | |
| 11 </param> | |
| 12 <param name="input2" type="text" label="URL of File (copy link from history)" /> | |
| 13 <param name="input3" type="text" label="Name of this sample" /> | |
| 14 <param name="input4" type="text" label="Description of this sample" /> | |
| 15 <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600"/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="output1" format="text"/> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="input1" value="test.fasta" ftype="fasta" /> | |
| 23 <param name="input2" value="chr"/> | |
| 24 <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" /> | |
| 25 </test> | |
| 26 </tests> | |
| 27 <help> | |
| 28 **What it does** | |
| 29 | |
| 30 Generates a custom track file for GWIPS-viz. | |
| 31 | |
| 32 This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale. | |
| 33 </help> | |
| 34 <citations/> | |
| 35 </tool> |