Mercurial > repos > jackcurragh > ribogalaxy_generate_custom_track

comparison generate_custom_track/generate_custom_track.xml @ 3:f46c581ca166 draft

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author jackcurragh
date Fri, 23 Sep 2022 13:30:42 +0000
parents 1fd87301a4fb
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2:1fd87301a4fb 3:f46c581ca166
1 <tool id="generate-custom_track" name="Generate Custom Track" version="0.1"> 1 <tool id="generate_custom_track" name="Generate Custom Track" version="0.2">
2 <description>Generates a Custom Track File for GWIPS-viz.</description> 2 <description>Generates a Custom Track File for GWIPS-viz.</description>
3 <command> 3 <command>
4 python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1 4 python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1
5 </command> 5 </command>
6 6
13 <param name="input3" type="text" label="Name of this sample" /> 13 <param name="input3" type="text" label="Name of this sample" />
14 <param name="input4" type="text" label="Description of this sample" /> 14 <param name="input4" type="text" label="Description of this sample" />
15 <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" /> 15 <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" />
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data name="output1" format="text"/> 18 <data name="output1" format="txt"/>
19 </outputs> 19 </outputs>
20 20
21 <help> 21 <help>
22 **What it does** 22 **What it does**
23 23