# HG changeset patch
# User jackcurragh
# Date 1663939051 0
# Node ID 1fd87301a4fbd8c28e418729512e8bf416317478
# Parent  02ba4bc9734546e99f85f0810cab9ffa283d62cd
Uploaded

diff -r 02ba4bc97345 -r 1fd87301a4fb generate_custom_track/generate_custom_track.xml
--- a/generate_custom_track/generate_custom_track.xml	Fri Sep 23 13:14:28 2022 +0000
+++ b/generate_custom_track/generate_custom_track.xml	Fri Sep 23 13:17:31 2022 +0000
@@ -1,7 +1,7 @@
 <tool id="generate-custom_track" name="Generate Custom Track" version="0.1">
     <description>Generates a Custom Track File for GWIPS-viz.</description>
     <command>
-    python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4"
+    python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1
     </command>
 
     <inputs>
@@ -12,18 +12,12 @@
         <param name="input2" type="text" label="URL of File (copy link from history)" />
         <param name="input3" type="text" label="Name of this sample" />
         <param name="input4" type="text" label="Description of this sample" />
-        <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600"/>
+        <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" />
     </inputs>
     <outputs>
        <data name="output1" format="text"/>
     </outputs>
-    <tests>
-        <test>
-            <param name="input1" value="test.fasta" ftype="fasta" />
-            <param name="input2" value="chr"/>
-            <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" />
-        </test>
-    </tests>
+
     <help>
 **What it does**
 
@@ -31,5 +25,4 @@
 
 This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale.
     </help>
-    <citations/>
 </tool>
\ No newline at end of file