# HG changeset patch
# User jackcurragh
# Date 1653652572 0
# Node ID d0638e3b966792eb1f94545fa624e85660af2d66
# Parent  48e1c3a73761ef42a00ccbd836dc084ec107195b
Uploaded

diff -r 48e1c3a73761 -r d0638e3b9667 bedtools_genomecov/macros.xml
--- a/bedtools_genomecov/macros.xml	Fri May 27 11:35:46 2022 +0000
+++ b/bedtools_genomecov/macros.xml	Fri May 27 11:56:12 2022 +0000
@@ -67,22 +67,22 @@
             label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage."
             help="If set, the coverage will be calculated based the spliced intervals only. For BAM files, this inspects the CIGAR N operation to infer the blocks for computing coverage. For BED12 files, this inspects the BlockCount, BlockStarts, and BlockEnds fields (i.e., columns 10,11,12). If this option is not set, coverage will be calculated based on the interval's START/END coordinates, and would include introns in the case of RNAseq data." />
     </xml>
-    <!-- <xml name="input_conditional_genome_file" token_optional="false" token_help="">
+    <xml name="input_conditional_genome_file" token_optional="false" token_help="">
         <conditional name="genome_file_opts">
             <param name="genome_file_opts_selector" type="select" label="Genome file" help="@HELP@">
-                <option value="loc" selected="true">Locally installed Genome file</option>
+                <!-- <option value="loc" selected="true">Locally installed Genome file</option> -->
                 <option value="hist">Genome file from your history</option>
             </param>
-            <when value="loc">
+            <!-- <when value="loc">
                 <param name="genome" type="select" optional="@OPTIONAL@" multiple="false" label="Genome file">
                     <options from_data_table="__dbkeys__" />
                 </param>
-            </when>
+            </when> -->
             <when value="hist">
                 <param name="genome" type="data" optional="@OPTIONAL@" format="tabular" label="Genome file" />
             </when>
         </conditional>
-    </xml> -->
+    </xml>
     <token name="@GENOME_FILE@">
 #if $genome_file_opts.genome
     -g