Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

comparison get_chrom_sizes/calculating_chrom.sizes.py @ 8:84664985411c draft

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author jackcurragh
date Tue, 17 May 2022 13:16:52 +0000
parents c96b29e00427
children c7e2879bf357
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7:f1d2d3397870 8:84664985411c
7 builtin = str(argv[3]) 7 builtin = str(argv[3])
8 prefix = str(argv[4]) 8 prefix = str(argv[4])
9 output = str(argv[5]) 9 output = str(argv[5])
10 # genome = 'test-data/test.fasta' 10 # genome = 'test-data/test.fasta'
11 # output = "test-data/test_chrom.sizes" 11 # output = "test-data/test_chrom.sizes"
12 print(fasta_source, genome, builtin, prefix, output)
13 if fasta_source == 'builtin':
14 genome = builtin
12 15
13 chromSizesoutput = open(output,"w") 16 chromSizesoutput = open(output,"w")
14 17
15 records = [] 18 records = []
16 record = False 19 record = False