Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

comparison get_chrom_sizes/get_chrom_sizes.xml @ 23:ca6a237895f3 draft

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author jackcurragh
date Wed, 18 May 2022 10:24:56 +0000
parents 48d8d8217ac4
children 3276016ac5b3
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22:48d8d8217ac4 23:ca6a237895f3
1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> 1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> 2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
3 <command> 3 <command>
4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} 4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2}
5 #if $refGenomeSource.genomeSource == "builtin": 5 #if $refGenomeSource.genomeSource == "builtin":
6 ${refGenomeSource.input1_builtin.fields.path} ${output1} 6 none ${refGenomeSource.input1_builtin.fields.path} ${output1}
7 #else: 7 #else:
8 ${refGenomeSource.input1_file} ${output1} 8 ${refGenomeSource.input1_file} none ${output1}
9 #end if 9 #end if
10 10
11 11
12 </command> 12 </command>
13 <inputs> 13 <inputs>