Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

diff get_chrom_sizes/get_chrom_sizes.xml @ 8:84664985411c draft

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author jackcurragh
date Tue, 17 May 2022 13:16:52 +0000
parents f1d2d3397870
children 8c5c2953c097
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line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:09:58 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:16:52 2022 +0000
@@ -1,7 +1,7 @@
 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
     <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
     <command>
-        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${refGenomeSource.input1_file} ${refGenomeSource.input1_builtin} ${input2} ${output1}
+        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${refGenomeSource.genomeSource.input1_file} ${refGenomeSource.genomeSource.input1_builtin} ${input2} ${output1}
     </command>
     <inputs>
         <conditional name="refGenomeSource">