--- a/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 13:46:35 2022 +0000
+++ b/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 13:49:26 2022 +0000
@@ -3,10 +3,11 @@
 from sys import argv
 # python calculating_chrom.sizes.py genome_input.fa output.chrom.sizes
 fasta_source = str(argv[1])
-genome = str(argv[2])
-builtin = str(argv[3])
-prefix = str(argv[4])
-output = str(argv[5])
+prefix = str(argv[2])
+output = str(argv[3])
+genome = str(argv[4])
+builtin = str(argv[5])
+
 # genome = 'test-data/test.fasta'
 # output = "test-data/test_chrom.sizes"
 print(fasta_source, genome, builtin, prefix, output)