--- a/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 13:52:08 2022 +0000
+++ b/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 13:57:39 2022 +0000
@@ -4,12 +4,12 @@
 # python calculating_chrom.sizes.py genome_input.fa output.chrom.sizes
 fasta_source = str(argv[1])
 prefix = str(argv[2])
-genome = str(argv[3])
-builtin = str(argv[4])
+output = str(argv[3])
+genome = str(argv[4])
+builtin = str(argv[5])
 
 # genome = 'test-data/test.fasta'
 # output = "test-data/test_chrom.sizes"
-print(fasta_source, genome, builtin, prefix, output)
 if fasta_source == 'builtin':
 	genome = builtin