# HG changeset patch
# User jackcurragh
# Date 1652796040 0
# Node ID 06c2eaff31e552ca65c523ff7bcebd381a75d012
# Parent  f87a4b64e6ef7415f5d7f7457cf725d20461719d
Uploaded

diff -r f87a4b64e6ef -r 06c2eaff31e5 get_chrom_sizes/calculating_chrom.sizes.py
--- a/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 13:57:39 2022 +0000
+++ b/get_chrom_sizes/calculating_chrom.sizes.py	Tue May 17 14:00:40 2022 +0000
@@ -4,16 +4,16 @@
 # python calculating_chrom.sizes.py genome_input.fa output.chrom.sizes
 fasta_source = str(argv[1])
 prefix = str(argv[2])
-output = str(argv[3])
-genome = str(argv[4])
-builtin = str(argv[5])
+# output = str(argv[3])
+genome = str(argv[3])
+builtin = str(argv[4])
 
 # genome = 'test-data/test.fasta'
 # output = "test-data/test_chrom.sizes"
 if fasta_source == 'builtin':
 	genome = builtin
 
-chromSizesoutput = open(output,"w")
+chromSizesoutput = open('output',"w")
 
 records = []
 record = False