# HG changeset patch
# User jackcurragh
# Date 1652869150 0
# Node ID 48d8d8217ac4c3766f89947751912ef642deb07b
# Parent  cc021a23613b4a4059a4f48b0c16a5b464a7bdcb
Uploaded

diff -r cc021a23613b -r 48d8d8217ac4 get_chrom_sizes/get_chrom_sizes.xml
--- a/get_chrom_sizes/get_chrom_sizes.xml	Wed May 18 08:47:20 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Wed May 18 10:19:10 2022 +0000
@@ -3,13 +3,11 @@
     <command>
         python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2}
             #if $refGenomeSource.genomeSource == "builtin":
-                ${refGenomeSource.input1_builtin.fields.path} 
+                ${refGenomeSource.input1_builtin.fields.path} ${output1}
             #else:
-                ${refGenomeSource.input1_file}
+                ${refGenomeSource.input1_file} ${output1}
             #end if
-            #if $output1 == $output1:
-                ${output1}
-            #end if
+
             
     </command>
     <inputs>