# HG changeset patch # User jackcurragh # Date 1648039988 0 # Node ID 6d5d1b56c28625ca6d6e87d9f62bc98a692e0ecc Uploaded diff -r 000000000000 -r 6d5d1b56c286 get_chrom_sizes/get_chrom_sizes.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_chrom_sizes/get_chrom_sizes.xml Wed Mar 23 12:53:08 2022 +0000 @@ -0,0 +1,24 @@ + + order of storing aligned sequences + '${output1}' + ]]> + + + + + + + + + + + + + +**What it does** + +creates a chromosome sizes file from a fai index + + + diff -r 000000000000 -r 6d5d1b56c286 get_chrom_sizes/test-data/test.fasta.fai --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_chrom_sizes/test-data/test.fasta.fai Wed Mar 23 12:53:08 2022 +0000 @@ -0,0 +1,6692 @@ +YAL012W 1785 9 50 51 +YAL069W 915 1839 50 51 +YAL068W_A 855 2784 50 51 +YAL068C 963 3666 50 51 +YAL067W_A 828 4660 50 51 +YAL067C 2382 5514 50 51 +YAL066W 909 7953 50 51 +YAL065C 987 8890 50 51 +YAL064W_B 981 9908 50 51 +YAL064C_A 981 10920 50 51 +YAL064W 885 11930 50 51 +YAL063C_A 891 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