# HG changeset patch
# User jackcurragh
# Date 1663941595 0
# Node ID 75df50cfe7a96bf0499e610e6d7a1ff900d2fd5d
# Parent  c1f79fd2cecd34d96ad5ea6abe0b968553f022a0
Uploaded

diff -r c1f79fd2cecd -r 75df50cfe7a9 get_chrom_sizes/get_chrom_sizes.xml
--- a/get_chrom_sizes/get_chrom_sizes.xml	Fri Sep 23 13:58:14 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Fri Sep 23 13:59:55 2022 +0000
@@ -22,12 +22,6 @@
             end if
         #end if
 
-
-
-                        cat ${refGenomeSource.input1_builtin.fields.path} | awk '$0 ~ ">" {if (NR > 1) {print c;} c=0; printf ${input2} substr($0,2,100) "\t"; } $0 !~ ">" {c+=length($0);} END {print c; }' | cat > $output1
-        #else:
-            cat ${refGenomeSource.input1_file} | awk '$0 ~ ">" {if (NR > 1) {print c;} c=0; printf ${input2} substr($0,2,100) "\t"; } $0 !~ ">" {c+=length($0);} END {print c; }' | cat > $output1
-        #end if
     </command>
     <inputs>
         <conditional name="refGenomeSource">