# HG changeset patch
# User jackcurragh
# Date 1652863640 0
# Node ID cc021a23613b4a4059a4f48b0c16a5b464a7bdcb
# Parent  147706e55621a8bcf0165d276caa17444e34703f
Uploaded

diff -r 147706e55621 -r cc021a23613b get_chrom_sizes/calculating_chrom.sizes.py
--- a/get_chrom_sizes/calculating_chrom.sizes.py	Wed May 18 08:25:36 2022 +0000
+++ b/get_chrom_sizes/calculating_chrom.sizes.py	Wed May 18 08:47:20 2022 +0000
@@ -4,9 +4,9 @@
 # python calculating_chrom.sizes.py genome_input.fa output.chrom.sizes
 fasta_source = str(argv[1])
 prefix = str(argv[2])
-# output = str(argv[3])
 genome = str(argv[3])
 builtin = str(argv[4])
+output = str(argv[5])
 
 # genome = 'test-data/test.fasta'
 # output = "test-data/test_chrom.sizes"
@@ -30,6 +30,8 @@
 if record not in records:
 	records.append(record)
 
+
+
 for seq_record in records:
 	if prefix != 'none':
 		output_line = f"{prefix}{seq_record[0]}\t{seq_record[1]}\n"