Mercurial > repos > jackcurragh > trips_viz_bam_to_sqlite

comparison trips_bam_to_sqlite/trips_bam_to_sqlite.xml @ 18:6562f4079f46 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author triasteran
date Mon, 13 Feb 2023 11:28:43 +0000
parents 915a577e6d71
children d8cc5dbc9fa8
comparison
equal deleted inserted replaced
17:915a577e6d71 18:6562f4079f46
1 <tool id="bam_to_sqlite" name="BAM to Sqlite" version="1.7"> 1 <tool id="bam_to_sqlite" name="BAM to Sqlite" version="1.8">
2 <description>Convert BAM file to SQLITE for Trips-Viz</description> 2 <description>Convert BAM file to SQLITE for Trips-Viz</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.19.0">pysam</requirement> 4 <requirement type="package" version="0.19.0">pysam</requirement>
5 <requirement type="package" version="1.7.0">sqlitedict</requirement> 5 <requirement type="package" version="1.7.0">sqlitedict</requirement>
6 <requirement type="package" version="3.37.1">sqlite</requirement> 6 <requirement type="package" version="3.37.1">sqlite</requirement>
22 <option value="builtin">Use a built-in SQLITE</option> 22 <option value="builtin">Use a built-in SQLITE</option>
23 <option value="history">Use one from the history</option> 23 <option value="history">Use one from the history</option>
24 </param> 24 </param>
25 <when value="builtin"> 25 <when value="builtin">
26 <param name="input2_builtin" type="select" format="sqlite" label="Select a SQLITE" help="if your organism of interest is not listed - contact RiboGalaxy team"> 26 <param name="input2_builtin" type="select" format="sqlite" label="Select a SQLITE" help="if your organism of interest is not listed - contact RiboGalaxy team">
27 <options from_data_table="sqlites"> 27 <options from_data_table="sqlites_upd">
28 <filter type="sort_by" column="2" /> 28 <filter type="sort_by" column="2" />
29 <validator type="no_options" message="No built-ins are available" /> 29 <validator type="no_options" message="No built-ins are available" />
30 </options> 30 </options>
31 </param> 31 </param>
32 </when> 32 </when>