Mercurial > repos > jackcurragh > trips_viz_bam_to_sqlite
diff trips_bam_to_sqlite/trips_bam_to_sqlite.xml @ 2:c8d8675697c6 draft
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author | jackcurragh |
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date | Wed, 20 Apr 2022 15:18:00 +0000 |
parents | 3ac12b611d7f |
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--- a/trips_bam_to_sqlite/trips_bam_to_sqlite.xml Sun Apr 17 08:44:20 2022 +0000 +++ b/trips_bam_to_sqlite/trips_bam_to_sqlite.xml Wed Apr 20 15:18:00 2022 +0000 @@ -2,11 +2,11 @@ <description>Convert BAM file to SQLITE for TRIPS-Viz</description> <requirements> <requirement type="package" version="0.19.0">pysam</requirement> - <requirement type="package" version="2.0.0">sqlitedict</requirement> + <requirement type="package" version="1.7.0">sqlitedict</requirement> <requirement type="package" version="3.37.1">sqlite</requirement> </requirements> <command><![CDATA[ - python $__tool_directory__/bam_to_sqlite.py $input1 $input2 $input3 + python $__tool_directory__/bam_to_sqlite.py $input1 $input2 $input3 $output1 ]]></command> <inputs> <param name="input1" type="data" format="bam" label="Sorted (samtools -n) BAM file" />