Mercurial > repos > jackcurragh > trips_viz_create_annotation

comparison trips_create_annotation/trips_create_annotation.xml @ 4:0558d4e0f1cf draft

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author triasteran
date Wed, 27 Apr 2022 08:20:24 +0000
parents f1c72ed4b32c
children cdecd5f9a4d3
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3:f1c72ed4b32c 4:0558d4e0f1cf
1 <tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.0"> 1 <tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.a">
2 <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description> 2 <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.19.0">pysam</requirement> 4 <requirement type="package" version="0.19.0">pysam</requirement>
5 <requirement type="package" version="2.0.0">sqlitedict</requirement> 5 <requirement type="package" version="2.0.0">sqlitedict</requirement>
6 <requirement type="package" version="3.37.1">sqlite</requirement> 6 <requirement type="package" version="3.37.1">sqlite</requirement>
7 <requirement type="package" version="3.0.2">intervaltree</requirement> 7 <requirement type="package" version="3.0.2">python-intervaltree</requirement>
8 8
9 </requirements> 9 </requirements>
10 <command> 10 <command>
11 python $__tool_directory__/create_annotation_sqlite.py ${output1} ${input2} ${input3} ${input4} ${input5} ${input6} ${output1} 11 python $__tool_directory__/create_annotation_sqlite.py ${output1} ${input2} ${input3} ${input4} ${input5} ${input6} ${output1}
12 </command> 12 </command>