Mercurial > repos > jackcurragh > trips_viz_create_annotation
comparison trips_create_annotation/create_annotation_sqlite.py @ 5:cdecd5f9a4d3 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Fri, 27 May 2022 10:14:09 +0000 |
| parents | f1c72ed4b32c |
| children | 8d47b5f57579 |
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| 4:0558d4e0f1cf | 5:cdecd5f9a4d3 |
|---|---|
| 307 for tran in master_dict: | 307 for tran in master_dict: |
| 308 if master_dict[tran]["chrom"] == "": | 308 if master_dict[tran]["chrom"] == "": |
| 309 # print ("tran {} has no chrom :(".format(tran)) | 309 # print ("tran {} has no chrom :(".format(tran)) |
| 310 notinannotation.append(tran) | 310 notinannotation.append(tran) |
| 311 for tran in notinannotation: | 311 for tran in notinannotation: |
| 312 print(tran) | |
| 313 del master_dict[tran] | 312 del master_dict[tran] |
| 314 # Dictionary to store the coding status of a gene, if any transcript of this gene is coding, the value will be True | 313 # Dictionary to store the coding status of a gene, if any transcript of this gene is coding, the value will be True |
| 315 coding_genes_dict = {} | 314 coding_genes_dict = {} |
| 316 # parse master_dict to calculate length, cds_start/stop and exon junction positions | 315 # parse master_dict to calculate length, cds_start/stop and exon junction positions |
| 317 for tran in master_dict: | 316 for tran in master_dict: |