Mercurial > repos > jackcurragh > trips_viz_create_annotation

comparison trips_create_annotation/create_annotation_sqlite.py @ 2:d70696d3341e draft

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author jackcurragh
date Sun, 17 Apr 2022 08:45:11 +0000
parents f24aed7a5cc7
children f1c72ed4b32c
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1:f089034be679 2:d70696d3341e
30 print("{}.sqlite already exists".format(organism)) 30 print("{}.sqlite already exists".format(organism))
31 sys.exit() 31 sys.exit()
32 32
33 33
34 # old_exons = SqliteDict( 34 # old_exons = SqliteDict(
35 # "/home/DATA/www/tripsviz/tripsviz/trips_annotations/mus_musculus/transcriptomic_to_genomic.sqlite" 35 # "/home/data2/www/tripsviz/tripsviz/trips_annotations/mus_musculus/transcriptomic_to_genomic.sqlite"
36 # ) 36 # )
37 37
38 38
39 delimiters = { 39 delimiters = {
40 "transcripts": {"before": [], "after": ["."], "annot_types": ["cds", "utr"]}, 40 "transcripts": {"before": [], "after": ["."], "annot_types": ["cds", "utr"]},