Mercurial > repos > jackcurragh > trips_viz_create_annotation

comparison trips_create_annotation/trips_create_annotation.xml @ 1:f089034be679 draft

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author triasteran
date Wed, 13 Apr 2022 10:58:41 +0000
parents f24aed7a5cc7
children d70696d3341e
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0:f24aed7a5cc7 1:f089034be679
1 <tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.0"> 1 <tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.1">
2 <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description> 2 <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.19.0">pysam</requirement> 4 <requirement type="package" version="0.19.0">pysam</requirement>
5 <requirement type="package" version="2.0.0">sqlitedict</requirement> 5 <requirement type="package" version="2.0.0">sqlitedict</requirement>
6 <requirement type="package" version="3.37.1">sqlite</requirement> 6 <requirement type="package" version="3.37.1">sqlite</requirement>
7 <requirement type="package" version="3.0.2">intervaltree</requirement> 7 <requirement type="package" version="3.0.2">python-intervaltree</requirement>
8 8
9 </requirements> 9 </requirements>
10 <command><![CDATA[ 10 <command><![CDATA[
11 python $__tool_directory__/create_annotation_sqlite.py ${input1} ${input2} ${input3} ${input4} ${input5} ${input6} 11 python $__tool_directory__/create_annotation_sqlite.py ${input1} ${input2} ${input3} ${input4} ${input5} ${input6}
12 ]]></command> 12 ]]></command>