Mercurial > repos > jackcurragh > trips_viz_create_annotation
diff trips_create_annotation/trips_create_annotation.xml @ 2:d70696d3341e draft
Uploaded
author | jackcurragh |
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date | Sun, 17 Apr 2022 08:45:11 +0000 |
parents | f089034be679 |
children | f1c72ed4b32c |
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--- a/trips_create_annotation/trips_create_annotation.xml Wed Apr 13 10:58:41 2022 +0000 +++ b/trips_create_annotation/trips_create_annotation.xml Sun Apr 17 08:45:11 2022 +0000 @@ -1,10 +1,10 @@ -<tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.1"> +<tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.0"> <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description> <requirements> <requirement type="package" version="0.19.0">pysam</requirement> <requirement type="package" version="2.0.0">sqlitedict</requirement> <requirement type="package" version="3.37.1">sqlite</requirement> - <requirement type="package" version="3.0.2">python-intervaltree</requirement> + <requirement type="package" version="3.0.2">intervaltree</requirement> </requirements> <command><![CDATA[ @@ -23,13 +23,13 @@ </outputs> <tests> <test> - <param name="input1" value="test_organism" ftype="text"/> + <param name="input1" value="test_org" ftype="text"/> <param name="input2" value="test.gtf" ftype="gff"/> <param name="input3" value="test.fasta" ftype="fasta"/> <param name="input4" value="0" ftype="integer"/> - <param name="input5" value="YAL012W" ftype="text"/> + <param name="input5" value="YDL248W" ftype="text"/> <param name="input6" value="YDL248W" ftype="text"/> - <output name="output1" file="test_organism.sqlite" ftype="sqlite" lines_diff="4" /> + <output name="output1" file="test_org.sqlite" ftype="sqlite" lines_diff="4" /> </test> </tests> <help>