diff trips_create_annotation/trips_create_annotation.xml @ 2:d70696d3341e draft

Uploaded
author jackcurragh
date Sun, 17 Apr 2022 08:45:11 +0000
parents f089034be679
children f1c72ed4b32c
line wrap: on
line diff
--- a/trips_create_annotation/trips_create_annotation.xml	Wed Apr 13 10:58:41 2022 +0000
+++ b/trips_create_annotation/trips_create_annotation.xml	Sun Apr 17 08:45:11 2022 +0000
@@ -1,10 +1,10 @@
-<tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.1">
+<tool id="trips_create_annotation" name="Create TRIPS-Viz annotation" version="1.0">
     <description>Covert GFF3/GTF and transcriptome FASTA to custom annotation sqlite</description>
     <requirements>
         <requirement type="package" version="0.19.0">pysam</requirement>
         <requirement type="package" version="2.0.0">sqlitedict</requirement>
         <requirement type="package" version="3.37.1">sqlite</requirement>
-        <requirement type="package" version="3.0.2">python-intervaltree</requirement>
+        <requirement type="package" version="3.0.2">intervaltree</requirement>
 
     </requirements>
     <command><![CDATA[
@@ -23,13 +23,13 @@
     </outputs>
     <tests>
         <test>
-        <param name="input1" value="test_organism" ftype="text"/>
+        <param name="input1" value="test_org" ftype="text"/>
         <param name="input2" value="test.gtf" ftype="gff"/>
         <param name="input3" value="test.fasta" ftype="fasta"/>
         <param name="input4" value="0" ftype="integer"/>
-        <param name="input5" value="YAL012W" ftype="text"/>
+        <param name="input5" value="YDL248W" ftype="text"/>
         <param name="input6" value="YDL248W" ftype="text"/>
-        <output name="output1" file="test_organism.sqlite" ftype="sqlite" lines_diff="4" />
+        <output name="output1" file="test_org.sqlite" ftype="sqlite" lines_diff="4" />
         </test>
     </tests>
     <help>