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annotate test-data/blast xml example2.xml @ 57:159989f6bfa6

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depend on new python3; set LD_LIBRARY_PATH
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 26 May 2014 15:34:54 +0200
parents 420d0508dcd6
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastn</BlastOutput_program>
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5 <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>No definition line</BlastOutput_query-def>
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10 <BlastOutput_query-len>16</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_expect>0.001</Parameters_expect>
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14 <Parameters_sc-match>2</Parameters_sc-match>
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15 <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
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16 <Parameters_gap-open>5</Parameters_gap-open>
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17 <Parameters_gap-extend>2</Parameters_gap-extend>
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18 <Parameters_filter>L;m;</Parameters_filter>
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19 </Parameters>
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20 </BlastOutput_param>
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21 <BlastOutput_iterations>
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22 <Iteration>
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23 <Iteration_iter-num>1</Iteration_iter-num>
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24 <Iteration_query-ID>Query_1</Iteration_query-ID>
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25 <Iteration_query-def>No definition line</Iteration_query-def>
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26 <Iteration_query-len>16</Iteration_query-len>
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27 <Iteration_hits>
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28 </Iteration_hits>
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29 <Iteration_stat>
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30 <Statistics>
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31 <Statistics_db-num>28813188</Statistics_db-num>
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32 <Statistics_db-len>53027764389</Statistics_db-len>
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33 <Statistics_hsp-len>13</Statistics_hsp-len>
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34 <Statistics_eff-space>157959578835</Statistics_eff-space>
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35 <Statistics_kappa>0.41</Statistics_kappa>
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36 <Statistics_lambda>0.625</Statistics_lambda>
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37 <Statistics_entropy>0.78</Statistics_entropy>
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38 </Statistics>
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39 </Iteration_stat>
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40 <Iteration_message>No hits found</Iteration_message>
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41 </Iteration>
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42 </BlastOutput_iterations>
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43 </BlastOutput>
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