Mercurial > repos > jankanis > blast2html

annotate NCBI Blast reference example_files/toggle.js @ 120:2729c2326235

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Fix for Rikilt issue 13 Hit e-value and identity% should be taken from the hsp with the highest bit score. Previously each of these values was calculated independently. Also use arrays for cover calculation instead of python lists and refactor the hit_info() code a bit.
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 31 Jul 2014 16:14:36 +0200
parents 344cd76f6fd2
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1
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2 Toggle = function(node) {
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3 this.init(node);
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4 }
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5
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6 /**
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7 * @class Creates a new Toggle class with "node" as src
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8 * @return Reutrns a new toggle instance
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9 */
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10 Toggle.prototype = {
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11
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12 init: function(node) {
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13
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14 // Subclass instance?
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15 if (typeof(arguments[0]) == 'undefined') return;
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16
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17 var oThis = this;
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18 this.node = node;
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19
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20 // Initialize "showing" variable based on presence of "showing" or
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21 // "hiding" class. If neither, then showing. Be sure class is
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22 // set to reflect variable value
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23 node.showing =
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24 utils.hasClass(node, "showing") || !utils.hasClass(node, "hiding");
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25 utils.addClass(node, node.showing ? "showing" : "hiding");
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26
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27 // Set notifier for node
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28 utils.addEvent(node, "click", function(e) {
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29 e = e || window.event;
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30 utils.preventDefault(e);
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31
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32 var theNode = utils.getTargetObj(e);
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33
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34 // Send message to global notifier, if one exists
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35 if (typeof(Notifier) != 'undefined') {
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36 var notifier = Notifier.getInstance();
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37 // Notify before change
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38 notifier.Notify(oThis, "change:" + theNode.id, !this.showing);
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39 }
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40
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41 // Hide or show based on current state
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42 if (this.showing) {
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43 oThis.hide();
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44 } else {
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45 oThis.show();
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46 }
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47
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48 }, false);
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49
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50 utils.addEvent(node, "selectstart", function(e) { utils.preventDefault(e); }, true);
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51 utils.addEvent(node, "drag", function(e) { utils.preventDefault(e); }, true);
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52
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53 // Cache "this" for ID lookup
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54 if (!node.id) {
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55 node.id = utils.createNewId();
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56 }
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57 var m = Toggle.getSrcs();
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58 m[node.id] = this;
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59 },
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60
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61 // Hide targets, and set self to hiding.
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62 hide: function() {
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63 var oThis = this;
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64
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65 oThis.setHiding();
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66 if (oThis.listeners) {
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67 forEach(oThis.listeners, function(l) {
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68 oThis.hideTarget(l);
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69 });
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70 }
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71 },
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72
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73 // Show targets, and set self to showing.
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74 show: function() {
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75 var oThis = this;
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76
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77 oThis.setShowing();
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78 if (oThis.listeners) {
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79 forEach(oThis.listeners, function(l) {
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80 oThis.showTarget(l);
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81 });
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82 }
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83 },
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84
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85 // Set own presentation to "showing"
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86 setShowing: function() {
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87 utils.addClass(this.node, "showing");
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88 utils.removeClass(this.node, "hiding");
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89 this.node.showing = true;
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90 },
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91
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92 // Set own presentation to "hiding"
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93 setHiding: function() {
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94 utils.addClass(this.node, "hiding");
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95 utils.removeClass(this.node, "showing");
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96 this.node.showing = false;
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97 },
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98
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99 // Show a target
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100 showTarget: function(l) {
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101 utils.addClass(l, "shown");
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102 utils.removeClass(l, "hidden");
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103 },
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104
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105 // Hide a target
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106 hideTarget: function(l) {
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107 utils.addClass(l, "hidden");
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108 utils.removeClass(l, "shown");
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109 },
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110
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111 // Add a target to this toggle.
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112 add: function(target) {
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113 if (!this.listeners) {
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114 this.listeners = new Array();
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115 }
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116 this.listeners[this.listeners.length] = target;
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117
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118 if (utils.hasClass(target, "hidden")) {
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119 this.setHiding();
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120 this.node.showing = false;
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121 } else {
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122 this.setShowing();
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123 this.node.showing = true;
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124 }
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125 }
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126 }
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127
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128 // Show/hide a "target" (a node controlled by the node with the given ID)
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129 Toggle.addTarget = function(srcid, target) {
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130 var tn = Toggle.findOrMake(srcid);
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131 tn.add(target);
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132 }
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133
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134 // Assoc array of srcs indexed by their ids
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135 Toggle.getSrcs = function() {
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136 if (!Toggle.srcs) {
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137 Toggle.srcs = new Object();
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138 }
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139 return Toggle.srcs;
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140 }
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141
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142 // Find or make toggle for given id
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143 Toggle.findOrMake = function(srcid) {
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144 var ts = Toggle.getSrcs();
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145 var tn = ts[srcid];
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146 if (!tn) {
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147 tn = new Toggle($(srcid));
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148 }
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149 return tn;
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150 }
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151
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152 // This dispatches the call to Toggle.onload, which may be
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153 // overridden by instances (subclasses)
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154 Toggle._onload = function() {
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155 Toggle.onload();
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156 }
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157
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158 // A toggle source node controls other nodes that reference it by id using
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159 // their toggle= attribute. A node may be both a toggle source and destination.
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160 Toggle.onload = function() {
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161 //alert("toggle start");
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162 if(utils.hasClass(document.body,"noToggleCheck")) return;
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163
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164 shnodes = jQuery("[toggle]");
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165 // Now hook up dst nodes
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166 forEach(shnodes, function(node) {
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167 // Link toggle node to its source
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168 var srcid = node.getAttribute("toggle");
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169 Toggle.addTarget(srcid, node);
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170 });
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171 //alert("toggle 2 end");
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172 }
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173
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174 utils.addEvent(window, 'load', Toggle._onload, false);