Mercurial > repos > jankanis > blast2html

annotate blast2html.xml @ 39:3173dfa849cc

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update dependency
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 19 May 2014 15:09:55 +0200
parents 91008923c402
children 637f96ffb9a4
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1 <tool id="blast2html" name="blast2html" version="0.0.4">
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3 <description>Convert BLAST XML to HTML</description>
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4
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5 <requirements>
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6 <requirement type="python-module">jinja2</requirement>
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7 <requirement type="python-module">lxml</requirement>
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8 <requirement type="python-module">argparse</requirement>
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9 </requirements>
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11 <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command>
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13 <stdio>
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14 <!-- Any exit code other than 0 is an error -->
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15 <exit_code range="1:" />
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16 <exit_code range=":-1" />
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17 </stdio>
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19 <inputs>
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20 <param format="blast" name="input" type="data" label="Source file"/>
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21 </inputs>
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23 <outputs>
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24 <data format="html" name="output" />
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25 </outputs>
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27 <tests>
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28 <test>
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29 <param name="input" value="blast xml example1.xml"/>
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30 <output name="out_file1" file="blast xml example1.html"/>
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31 </test>
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32 <test>
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33 <param name="input" value="blast xml example2.xml"/>
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34 <output name="out_file1" file="blast xml example2.html"/>
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35 </test>
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36 <test>
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37 <param name="input" value="blast xml example3.xml"/>
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38 <output name="out_file1" file="blast xml example3.html"/>
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39 </test>
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40 <test>
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41 <param name="input" value="blast xml example4.xml"/>
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42 <output name="out_file1" file="blast xml example4.html"/>
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43 </test>
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44 </tests>
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46 <help>
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47 This tool converts the default BLAST XML result into a HTML document
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48 </help>
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50 </tool>