Mercurial > repos > jankanis > blast2html

annotate tool_dependencies.xml @ 29:420d0508dcd6

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
reorganise to match galaxy tool shed layout
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 16:50:38 +0200
parents blast2html.xml@8a8c0c71b5d1
children ce8f29efc0a1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
28
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
1 <tool id="blast2html" name="blast2html" version="0.0.1">
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
2
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
3 <description>Convert BLAST XML to HTML</description>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
4
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
5 <requirements>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
6 <requirement type="python-module">jinja2</requirement>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
7 <requirement type="python-module">lxml</requirement>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
8 </requirements>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
9
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
10 <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
11
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
12 <inputs>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
13 <param format="blast" name="input" type="data" label="Source file"/>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
14 </inputs>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
15
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
16 <outputs>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
17 <data format="html" name="output" />
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
18 </outputs>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
19
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
20 <tests>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
21 <test>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
22 <param name="input" value="blast-view_test1_in.xml"/>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
23 <output name="out_file1" file="blast-view_test1_out.html"/>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
24 </test>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
25 <test>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
26 <param name="input" value="blast-view_test2_in.xml"/>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
27 <output name="out_file1" file="blast-view_test2_out.html"/>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
28 </test>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
29 </tests>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
30
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
31 <help>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
32 This tool converts the default BLAST XML result into a HTML document
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
33 </help>
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
34
8a8c0c71b5d1 add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
35 </tool>